Aynalem Haile

Serial translocation by means of circular intermediates underlies colour sidedness in cattle

Colour sidedness is a dominantly inherited phenotype of cattle characterized by the polarization of pigmented sectors on the flanks, snout and ear tips. It is also referred to as ‘lineback’ or ‘witrik’ (which means white back), as colour-sided animals typically display a white band along their spine. Colour sidedness is documented at least since the Middle Ages and is presently segregating in several cattle breeds around the globe, including in Belgian blue and brown Swiss. Here we report that colour sidedness is determined by a first allele on chromosome 29 (Cs29), which results from the translocation of a 492-kilobase chromosome 6 segment encompassing KIT to chromosome 29, and a second allele on chromosome 6 (Cs6), derived from the first by repatriation of fused 575-kilobase chromosome 6 and 29 sequences to the KIT locus. We provide evidence that both translocation events involved circular intermediates. This is the first example, to our knowledge, of a phenotype determined by homologous yet non-syntenic alleles that result from a novel copy-number-variant-generating mechanism.

Community-based alternative breeding plans for indigenous sheep breeds in four agro-ecological zones of Ethiopia.

Based on the results of participatory approaches to define traits in the breeding objectives, four scenarios of ram selection and ram use were compared via deterministic modelling of breeding plans for community-based sheep breeding programmes in four diverse agro-ecological regions of Ethiopia. The regions (and production systems) were Afar (pastoral/agro-pastoral), Bonga and Horro (both mixed crop-livestock) and Menz (sheep-barley). The schemes or scenarios differed in terms of selection intensity and duration of ram use. The predicted genetic gains per year in yearling weight (kilograms) were comparable across the schemes but differed among the breeds and ranged from 0.399 to 0.440 in Afar, 0.813 to 0.894 in Bonga, 0.850 to 0.940 in Horro, and 0.616 to 0.699 in Menz. The genetic gains per year in number of lambs born per ewe bred ranged from 0.009 to 0.010 in both Bonga and Horro. The predicted genetic gain in the proportion of lambs weaned per ewe joined was nearly comparable in all breeds ranging from 0.008 to 0.011. The genetic gain per year in milk yield of Afar breed was in the order of 0.018 to 0.020 kg, while the genetic gain per generation for greasy fleece weight (kg) ranged from 0.016 to 0.024 in Menz. Generally, strong selection and shorter duration of ram use for breeding were the preferred options. The expected genetic gains are satisfactory but largely rely on accurate and continuous pedigree and performance recording.

Community-based livestock breeding programmes: essentials and examples.

Breeding programmes described as community-based (CBBP) typically relate to low-input systems with farmers having a common interest to improve and share their genetic resources. CBBPs are more frequent with keepers of small ruminants, in particular smallholders of local breeds, than with cattle, pigs or chickens with which farmers may have easier access to alternative programmes. Constraints that limit the adoption of conventional breeding technologies in low-input systems cover a range of organizational and technical aspects. The analysis of 8 CBBPs located in countries of Latin-America, Africa and Asia highlights the importance of bottom-up approaches and involvement of local institutions in the planning and implementation stages. The analysis also reveals a high dependence of these programmes on organizational, technical and financial support. Completely self-sustained CBBPs seem to be difficult to realize. There is a need to implement and document formal socio-economic evaluations of CBBPs to provide governments and other development agencies with the information necessary for creating sustainable CBBPs at larger scales.

Smallholder goat breeding and flock management practices in the central rift valley of Ethiopia

The study was conducted in the central rift valley of Ethiopia to define Arsi-Bale goat keepers’ breeding objectives and breeding practices and to describe flock management practices and rate of inbreeding in Arsi-Bale goat population. Two-stage sampling techniques were employed to select study sites and 202 respondents. Semistructured questionnaire and group discussion were used to collect the required information. Data were analyzed using statistical package for social science. Rate of inbreeding in the population and indices were also calculated. On average, each respondent holds around 12 goats in which 30.7, 66.6 and 2.7% were males, females and castrates, respectively. The most important purpose of goat production in the study area was for milk utilization. Farmers have multiple breeding objectives and they considered both subjective and objective selection criteria with slightly more emphasis on morphological characteristics for buck selection than replacement doe selection. Only 39.1% (n = 79) of respondents have their own breeding bucks. None of the respondents practiced controlled mating. Average rate of inbreeding in the population was around 0.20. Arsi-Bale goats are found to be adaptive to the prevailing condition. Therefore, any breed improvement strategy to be designed or implemented in the study area and other similar areas should consider important traditional breeding practices.

Valuation of traits of indigenous sheep using hedonic pricing in CentralEthiopia

This study estimates the implicit prices of indigenous sheep traits based onrevealed preferences. A hedonic pricing model is fitted to examine thedeterminants of observed sheep prices. Transaction data were generated fromrural markets of Horro-Guduru Wollega Zone of Ethiopia. Both OLS andheteroscedasticity consistent estimations were made. The empirical resultsconsistently indicate that phenotypic traits of traded indigenous sheep (age,color, body size, and tail condition) are major determinants of price implyingthe importance of trait preferences in determining the price of sheep in localmarkets. Season and market locations are also very important price determinantssuggesting the need to target season and market place in sheep improvementprogrammes. Therefore, the development of a comprehensive breeding program thathas marketing element is crucial to make sheep improvement sustainable and sheepkeepers benefit from the intervention.

Breeding programs for smallholder sheep farming systems: I. Evaluation of alternative designs of breeding schemes

Village- and central nucleus-based schemes were simulated and evaluated for their relative bio-economic efficiencies, using Ethiopias Menz sheep as example. The schemes were: village-based 2-tier (Scheme-1) and 1-tier (Scheme-2) cooperative village breeding schemes, dispersed village-based nuclei scheme (Scheme-3), conventional 2-tier central nucleus-based scheme (Scheme-4), and schemes linking a central nucleus and village multiplier nuclei with selection in central nucleus (Scheme-5) or in both central and village nuclei (Scheme-6). Among village-based schemes, Scheme-1 gave the highest genetic progress, while Scheme-2 was economically the most efficient with genetic gain in the breeding objective of Birr 5.6 and a profit of Birr 37.2/ewe/year. The central nucleus schemes were more efficient than the village schemes. Scheme-4 was the most efficient with genetic gain in the breeding objective of Birr 13.5 and a profit of Birr 71.2, but is operationally more difficult as it requires a very large central nucleus. The choice between village and central nucleus-based schemes would depend on local conditions (availability of infrastructure, logistics and technical knowhow and support). Linking central nucleus with village-based nuclei (Scheme-6) would be a feasible option to overcome the operational difficulties of the conventional central nucleus scheme. If a village-based breeding program is envisaged as should be the 1st step in most low-input systems, then Scheme-2 is the most efficient. To scale out to an entire Menz breed level, Scheme-3 would be recommended.

Husbandry and breeding practices of cattle in Mursi and Bodi pastoral communities in Southwest Ethiopia

This study was conducted with the objectives of documenting the husbandry and breeding practices of Mursi and Bodi communities who keep Mursi cattle breed in the pastoral production system of southwest Ethiopia. The pastoral communities raise more number of cattle (54.27 heads) compared to goat (6.47) and sheep (1.24). Sale of cattle is the main income source, while sale of honey and goat ranked second and third. The main purpose of keeping cattle is for milk production and blood as source of food, sources of income and social functions. The number of milking cows was higher (P<0.001) in Mursi (10.22) than Bodi (6.02 heads) community herds. The proportion of milking cows on average was 45.02% of the total breeding females. The ratio of breeding male to female was 1:9.8. This ratio was bigger (P<0.05) in the Mursi (1:11.28) than Bodi (1:7.73) community. The pastoralists select breeding animals based on their trait preferences. The traits preferred were milk yield, adaptive ability, coat color and ability to survive and produce on low quantity and quality feeds. Breeding males were selected based on coat color, body size and fertility by both pastoral communities; whereas, female animals were selected on the bases of milk yield, coat color, fertility and udder size. Male cattle are castrated at the age of 4.17 years, which is different (P<0.01) between Bodi (3.58) and Mursi (4.59) communities. Indigenous husbandry and breeding practices would be used as a basis for designing and implementation of appropriate breed improvement programs.

Feasibility of pedigree recording and genetic selection in village sheep flocks of smallholder farmers

Pedigree recording and genetic selection in village flocks of smallholder farmers have been deemed infeasible by researchers and development workers. This is mainly due to the difficulty of sire identification under uncontrolled village breeding practices. A cooperative village sheep-breeding scheme was designed to achieve controlled breeding and implemented for Menz sheep of Ethiopia in 2009. In this paper, we evaluated the reliability of pedigree recording in village flocks by comparing genetic parameters estimated from data sets collected in the cooperative village and in a nucleus flock maintained under controlled breeding. Effectiveness of selection in the cooperative village was evaluated based on trends in breeding values over generations. Heritability estimates for 6-month weight recorded in the village and the nucleus flock were very similar. There was an increasing trend over generations in average estimated breeding values for 6-month weight in the village flocks. These results have a number of implications: the pedigree recorded in the village flocks was reliable; genetic parameters, which have so far been estimated based on nucleus data sets, can be estimated based on village recording; and appreciable genetic improvement could be achieved in village sheep selection programs under low-input smallholder farming systems.

Effects of non-genetic factors on responses to gastro-intestinal nematode infections in Ethiopian sheep

The effects of non-genetic factors on responses to gastrointestinal nematode infections were examined in artificially infected indigenous Horro and Menz lambs in the central highlands of Ethiopia. The experiment involved lambs of two sexes, infection and monitoring regimens (3 levels), dam parity (4 levels) and birth types (2 levels). A total of 152 weaner lambs (103 Menz and 49 Horro) were used. Endoparasite challenge involved three infection periods (primary, secondary and tertiary) each separated by an anthelmintic treatment. Data were collected on faecal egg counts (FEC), packed cell volume (PCV), worm count, and weight gain. Female lambs were found to harbor lower numbers of T. colubriformis counts and had lower (p < 0.01) FEC in tertiary infection compared to males. Younger animals were more susceptible to the nematode infections than older animals as measured by all the parameters studied (p < 0.01). Twins had higher FEC in both secondary and tertiary infections compared to singles. Lambs born to dams of first parity had higher PCV and lower FEC values during the tertiary infection compared to other parities. These results would be used as basic information in designing a more rational control strategy and should also help to advise on better management care for less resistant sheep.

Systematic review and meta-analysis of metacestodes prevalence in small ruminants in Ethiopia.

Metacestodes, the larval stages of canid cestode parasites, are among the causes of morbidity, mortality and financial losses in small ruminants in Ethiopia as a result of organ and carcass condemnation at slaughter. Several studies have been conducted over the years; however, these studies often had limited scope and coverage. This systematic review and meta-analysis was conducted to collate the information so far available in order to provide a pooled prevalence estimate at national level and identify potential predictors. Published and grey literature written in English and Amharic in the period from, 1st of January 1990 to June 25, 2015 were searched from electronic databases and repositories of academic and research institutions. Relevant animal level data on 67,743 small ruminants was extracted from 23 published articles and one masters thesis resulting altogether in 86 animal level reports that conformed to predefined criteria. The dataset was analyzed using a meta-analytical approach. The pooled prevalence estimate computed for metacestodes infection was 11.8% with a 95% confidence interval (CI) of 9.1, 15.4. The highest prevalence estimate 31.2% (95% CI: 23.1, 40.9) was found for Cysticercus tenuicollis (Taenia hydatigena) followed by cystic echinococcosis (Echinococcus granulosus) 8.8% (95% CI: 5.8, 13.1), Cysticercus ovis (Taenia ovis) 4.9% (95% CI: 2.9, 9.4) and Coenurus cerebralis (Taenia multiceps) 4.6% (95% CI: 1.6, 12.2). Among the predictors considered for heterogeneity analysis only sample size and metacestode type fitted the final multivariable meta-regression model and explained 26.3% of the explainable heterogeneity between studies (p<0.05). The prevalence was noted to decrease with increasing sample size. No significant difference in prevalence was observed between sheep and goats (p>0.05). In conclusion, this review showed a widespread occurrence of metacestodes in small ruminants in Ethiopia. Thus, a holistic approach to break the life cycle of these parasitic stages is suggested, including regulatory interventions that encourage dog owners to keep their dogs confined and prevent backyard slaughter and proper management of abattoir waste disposal.