Aziz Arshad

Anthropogenic impacts on heavy metal concentrations in the coastal sediments of Dumai, Indonesia

Concentrations of Cd, Cu, Pb, Zn, Ni and Fe were determined in the surface sediments to investigate the distributions, concentrations and the pollution status of heavy metals in Dumai coastal waters. Sediment samples from 23 stations, representing 5 different site groups of eastern, central and western Dumai and southern and northern Rupat Island, were collected in May 2005. The results showed that heavy metal concentrations (in μg/g dry weight; Fe in %) were 0.88 (0.46–1.89); 6.08 (1.61–13.84); 32.34 (14.63–84.90); 53.89 (31.49–87.11); 11.48 (7.26–19.97) and 3.01 (2.10–3.92) for Cd, Cu, Pb, Zn, Ni and Fe, respectively. Generally, metal concentrations in the coastal sediments near Dumai city center (eastern and central Dumai) which have more anthropogenic activities were higher than those at other stations. Average concentration of Cd in the eastern Dumai was slightly higher than effective range low (ERL) but still below effective range medium (ERM) value established by Long et al. (Environmental Management 19(1):81–97, 1995; Environmental Toxicology Chemistry 17(4):714–727, 1997). All other metals were still below ERL and ERM. Calculated enrichment factor (EF), especially for Cd and Pb, and the Pollution load index (PLI) value in the eastern Dumai were also higher than other sites. Cd showed higher EF when compared to other metals. Geo-accumulation indices (Igeo) in most of the stations (all site groups) were categorized as class 1 (unpolluted to moderately polluted environment) and only Cd in Cargo Port was in class 2 (moderately polluted). Heavy metal concentrations found in the present study were comparable to other regions of the world and based on the calculated indices it can be classified as unpolluted to moderately polluted coastal environment.

Distribution and significance of seagrass ecosystems in Malaysia

Seagrasses are the only flowering plants (monocotyledonous Angiosperms) that have adapted themselves to living in marine and estuarine habitats, and are submerged most of the time. They are rooted in sediments on the sea bottom, with shoots appearing above the substrate. Seagrasses occurred at 78 sites scattered in the west and east coasts of Peninsular Malaysia and in Sabah and Sarawak in East Malaysia. They are usually found along the coasts growing in association with shallow inter-tidal, mangroves, coral reefs, semi-enclosed lagoons and shoals. In these habitats, seagrass beds or meadows have distinct species assemblage completely adapted to the submerged life. There are fourteen major species of seagrasses recorded in Malaysia: Enhalus acoroides, Halophila beccarii, H. decipiens, H. ovalis, H. minor, H. spinulosa, Halodule pinifolia, H. uninervis, Cymodocea rotundata, C. serrulata, Thalassia hemprichii, Syringodium isoetifolium, Ruppia maritima and Thalassodendron ciliatum. Although seagrasses make up only a small portion of the marine ecosystem, the physical settings and their interactive community within and from outside account for their high diversity and ensure survival of an assortment of vertebrates (fish), invertebrates (shrimps, starfish, sea cucumbers, bivalves, gastropods), and seaweeds. Seagrass form the food and habitats for the vulnerable dugongs or sea cows (Dugong dugon), seahorses (Hippocampus spp.) and endangered green turtles (Chelonia mydas), and for other fish, and also a feeding ground for seasonal migratory birds, Egretta garzetta. Seagrasses provide conditions for the growth and abundance of invertebrates and fish that many local coastal communities collect and catch for their livelihood. Seagrass ecosystems are sources of food and yet they are continually threatened by human activities, causing their degradation and possible habitat loss. The purpose of this review is to give information on the significant linkages of seagrasses with the coastal inhabitants and to suggest recommendations for the protection and conservation of this important ecosystem and the associated resources.

Seasonality in macroinvertebrate community composition across a neglected ecological boundary, the freshwater-estuarine transition zone

The boundary between freshwater and estuarine ecosystems at the extreme head of estuaries has received little attention from benthic ecologists. This short communication addresses this research caveat, presenting preliminary data on the spatial and temporal (seasonal) variation in the composition of benthic macroinvertebrate communities across the transition zone at the head of a small British estuary. Cluster analysis and multidimensional scaling ordination demonstrated that a distinct community occurred at a point just preceding the recognised transition between fresh and brackish waters (salinity <0.2PSU). This transition community contained a mixture of freshwater and estuarine taxa and, despite seasonal migrations at the head of the estuary, community structure remained significantly distinct from that at adjacent sites throughout the year. These preliminary data suggest that the community dynamics across the transition zone show complex patterns and may offer an important research opportunity in aquatic ecology.

Selection and identification of non-pathogenic bacteria isolated from fermented pickles with antagonistic properties against two shrimp pathogens

In this study, potential probiotic strains were isolated from fermented pickles based on antagonistic activity against two shrimp pathogens (Vibrio harveyi and Vibrio parahaemolyticus). Two strains L10 and G1 were identified by biochemical tests, followed by16S ribosomal RNA gene sequence analysis as Bacillus subtilis, and characterized by PCR amplification of repetitive bacterial DNA elements (Rep-PCR). Subsequently, B. subtilis L10 and G1 strains were tested for antibacterial activity under different physical conditions, including culture medium, salinity, pH and temperature using the agar well diffusion assay. Among the different culture media, LB broth was the most suitable medium for antibacterial production. Both strains showed the highest level of antibacterial activity against two pathogens at 30 °C and 1.0% NaCl. Under the pH conditions, strain G1 showed the greatest activity against V. harveyi at pH 7.3–8.0 and against V. parahaemolyticus at pH 6.0–8.0, whereas strain L10 showed the greatest activity against two pathogens at pH 7.3. The cell-free supernatants of both strains were treated with four different enzymes in order to characterize the antibacterial substances against V. harveyi. The result showed considerable reduction of antibacterial activity for both strains, indicating the proteinaceous nature of the antibacterial substances. A wide range of tolerance to NaCl, pH and temperature was also recorded for both strains. In addition, both strains showed no virulence effect in juvenile shrimp Litopenaeus vannamei. On the basis of these results and safety of strains to L. vannamei, they may be considered for future challenge experiments in shrimp as a very promising alternative to the use of antibiotics.

Aspects of the reproductive biology of two archer fishes Toxotes chatareus, (Hamilton 1822) and Toxotes jaculatrix (Pallas 1767)

Various aspects of the reproductive biology of two archer fishes Toxotes chatareus and Toxotes jaculatrix were studied to describe gonad development, spawning season, sex ratio, and fecundity. Spawning season was assessed using monthly changes in gonadosomatic index (GSI) and histological inspection of the gonads. Both species exhibit two modes of oocytes; a mode of small primary growth oocytes and a single mode that increases with size as oocytes sequester vitellogenin and undergo maturation, showing the synchronous oocyte development typical of total spawners. Based on GSI values and advanced stages of oocyte maturity, T. chatareus and T. jaculatrix, females appear to spawn from November to December. The average fecundity of female T. chatareus was 55 000 ± 5538 eggs, and T. jaculatrix was 50 000 ± 3440 eggs; fecundity ranged from 20 000 to 150 000 eggs for both species, with relative fecundities of 600 to 1100 eggs/g body weight, and a mean value of 800 ± 32 for T. chatareus; relative fecundity ranged from 500 to 1100 with a mean value of 700 ± 23 for T. jaculatrix. Sex ratio, defined as the proportion of males to females, was 2.2 and 2.5 in T. chatareus and T. jaculatrix, respectively. The apparent abundance of males in samples could be due to females being positioned lower in the water column and therefore being sampled less frequently. Our results indicate that in both species, spawning occurs between the months of November and December during the monsoon season, which provides the mangrove coastal waters inhabited by these species with an abundance of food resources and additional floodplain nursery habitat for larvae and juveniles.

Embryonic, larval, and early juvenile development of the tropical sea urchin, Salmacis sphaeroides (Echinodermata: Echinoidea).

Salmacis sphaeroides (Linnaeus, 1758) is one of the regular echinoids, occuring in the warm Indo-West Pacific, including Johor Straits, between Malaysia and Singapore. In order to investigate the developmental basis of morphological changes in embryos and larvae, we documented the ontogeny of S. sphaeroides in laboratory condition. Gametes were obtained from adult individuals by 0.5 M KCl injection into the coelomic cavity. Fertilization rate at limited sperm concentration (10−5 dilution) was 96.6 ± 1.4% and the resulting embryos were reared at 24°C. First cleavage (2-cell), 4-cell, 8-cell, 16-cell, 32-cell, and multicell (Morulla) stages were achieved 01.12, 02.03, 02.28, 02.51, 03.12, and 03.32 h postfertilization. Ciliated blastulae with a mean length of 174.72 ± 4.43 μm hatched 08.45 h after sperm entry. The gastrulae formed 16.15 h postfertilization and the archenteron elongated constantly while ectodermal red-pigmented cells migrated synchronously to the apical plate. Pluteus larva started to feed unicellular algae in 2 d, grew continuously, and finally attained metamorphic competence in 35 d after fertilization. Metamorphosis took approximately 1 h 30 min from attachment to the complete resorption of larval tissues and the development of complete juvenile structure with adult spines, extended tubefeet and well-developed pedicellaria, the whole event of which usually took place within 1 d postsettlement. This study represents the first successful investigation on embryonic, larval, and early juvenile development of S. sphaeroides. The findings would greatly be helpful towards the understanding of ontogeny and life-history strategies, which will facilitate us to develop the breeding, seed production, and culture techniques of sea urchins in captive condition.

Effects of different dietary organic acids on the survival, growth, and hepatopancreatic histopathology of the blue swimmer crab Portunus pelagicus

ABSTRACT Organic acids are receiving increasing attention as a potential means to improve the growth as well as nutrient utilization of aquatic animals. A 20-day experiment was conducted to compare the effects of different dietary organic acid salts that included sodium acetate, sodium citrate, sodium butyrate, or sodium propionate at 2%, on the survival, growth, and hepatopancreatic histopathology of blue swimmer crab Portunus pelagicus early juveniles. All diets were isonitrogenous and were provided to apparent satiation twice daily. Crabs were kept individually within plastic containers, and there were 45 replicate crabs for each treatment. Results showed that, by the third molt, all the tested dietary organic acids significantly (P < 0.05) accelerated the molting (7.16–8.65 days) of the crabs compared with those in the control treatment (10.03 days). The specific growth rate (SGR) for width and length as well as the final dry weights were significantly higher (P < 0.05) in all the organic acid treatments, while SGR for weight was significantly higher (P < 0.05) in the sodium acetate and sodium propionate treatments, compared with the control. Hepatopancreatic histopathology revealed no structural differences in all treatments or staining intensity for glycogen. To our knowledge, this is the first reported study showing improvements to the survival and growth of crabs fed with inclusions of dietary organic acids.

Fish chemokines 14, 20 and 25: A comparative statement on computational analysis and mRNA regulation upon pathogenic infection.

In this study, we reported a molecular characterization of three CC chemokines namely, CsCC-Chem14, CsCC-Chem20 and CsCC-Chem25 which are were identified from the established cDNA library of striped murrel Channa striatus. Multiple sequence alignment of all the three chemokines revealed the presence of gene specific domains and motifs including small cytokine domain, IL8 like domain, receptor binding site and glycosaminoglycan (GAG) binding sites. Three dimensional structures of the chemokines under study showed an important facet on their anti-microbial property. Tissue specific mRNA expression showed that the CsCC-Chem14 is highly expressed in spleen, CsCC-Chem20 in liver and CsCC-Chem25 in trunk kidney. On challenge C. striatus with oomycete fungus Aphanomyces invadans, both CsCC-Chem20 and CsCC-Chem25 showed significant (P < 0.05) up-regulation compared to CsCC-Chem14. The increase in the expression levels of CsCC-Chem20 and CsCC-Chem25 due to infection showed that they are antimicrobial proteins. But considering the CsCC-Chem14 expression, it is found to be a constitutive chemokine and is involved in homeostatic function in spleen of C. striatus. C. striatus challenged with bacteria Aeromonas hydrophila also exhibited different up-regulation pattern in all the three chemokines at various time points. However, extensive studies are required to determine the functional activities of CsCC-Chem14, CsCC-Chem20 and CsCC-Chem25 in vitro and in vivo to gain more knowledge at the molecular and proteomic levels.

Spatial and temporal variations in calanoid copepod distribution in the Straits of Malacca

The distribution and abundance of planktonic calanoid copepods were studied from samples collected at 13–20 stations during four oceanographic cruises (pre- and post- monsoons, and during northeast (NE) and southwest (SW) monsoons) performed between 1998 and 2000 in the Straits of Malacca. Space and time variations of calanoid copepods were described using univariate (number of species, diversity indices, abundance) as well as multivariate (MDS, ANOSIM, SIMPER) techniques from the “Plymouth Routines in Multivariate Ecological Research” (PRIMER) package. There were significant differences in abundance between the cruises. k-Dominance curves also revealed significant differences in the relative species abundance distributions among the monsoon periods, and a decrease in diversity from northern to southern parts of the Straits during each cruise. Multi-dimensional scaling revealed four groups of abundances with differences in species composition. Evidence from analysis of similarity (ANOSIM) suggested that the differences in communities among monsoon periods were significant, although spatial differences among samples in geographic locations in the northern, central and southern parts of the Straits were insignificant. These differences resulted from an overall change in the balance of relative abundance of few dominant species, rather from changes of many species. Similarity percentage analyses (SIMPER) indicated that the major species contributing to the average dissimilarity between monsoons varied temporally.

Habitat preference and usage of Strombus canarium Linnaeus, 1758 (Gastropoda: Strombidae) in Malaysian seagrass beds

Abstract Despite their economic importance, the ecology of Strombus canarium is poorly understood and factors influencing their habitat preferences remain largely unexplained. The species was reported as highly associated with seagrass bed ecosystems, but their distribution and specific preferences within the habitat remain unknown. Determining the mechanisms that regulate conch distribution and abundance is of fundamental importance for management of the species. In this study habitat preference and usage of conch in their natural habitat were investigated. The population was patchily distributed and present in local colonies that comprised of mixed age groups. There was high spatial variation in conch abundance, where multivariate analysis (PCA) showed high preferences for microhabitat with mixed seagrasses dominated by Halophila spp. Other important habitat characteristics preferred were high sediment organic content (% LOI), high sediment sorting (φ), and low mean sediment particulate size. Areas with dense Enhalus acoroides meadows, though in many reports have been linked with the species, were surprisingly the least preferred microhabitat. It is concluded that the preference towards specific microhabitat within the seagrass bed is associated with their feeding, and intra-specific interactions among individuals.