B.W. Kennedy

Use of estimated breeding values in a selection index to breed Yorkshire pigs for high and low immune and innate resistance factors

Abstract A random bred population of Yorkshire pigs (Go) was characterized using fourteen various indicators of immune and innate resistance. Based on initial heritability estimates and correlations between these traits, two measures of antibody (serum IgG, and antibody response to HEWL), and cellular activity (blastogenic response to Con A and cutaneous DTH to BCG/PPD), and one indicator of innate monocyte function (uptake and killing of S. typhimurium) were chosen as breeding criteria to be used in a composite selection index. Based on these five traits a combined estimated breeding value (EBV) was calculated for each animal and pigs were assigned to High, Low or Control breeding groups. Approximately 120 first generation piglets (G1) were then similarly evaluated. Based on Go plus G1 heritability estimates were 0.25, 0.23, 0.08, 0.08 and zero for secondary antibody response to HEWL, blastogenic response to Con A, cutaneous DTH to BCG/PPD, serum IgG, and monocyte function, respectively. Least squares me...

The use of constrained selection indexes in breeding for economic merit

SummaryVarious methods exist for the derivation of restricted and/or desired gains selection indexes, and their use in applied breeding has been advocated. It is shown that there exists a set of implied linear economic weights for all constrained indexes and their derivation is given. Where economic weights are linear and known, a standard selection index is, by definition, optimal and thus a constrained index will usually be suboptimal. It is argued that economic weights can always be estimated and that the effects of uncertain weights can be examined by sensitivity analysis. If economic weights are nonlinear, use of the first order (linear) economic weights or a derived linear index, using previously described methods, will give very close to optimum economic selection responses. Examples from the literature indicate that severe losses of potential economic gain can possibly occur through use of a constrained index. It is concluded that constrained indexes should be avoided for economic genetic selection.

Method to estimate genotype probabilities at individual loci in farm livestock.

SummaryA Bayesian method to estimate genotype probabilities at a single locus using information on the individual and all its relatives and their mates has been developed. The method uses data over several generations, can deal with large numbers of individuals in large livestock families and allows for missing information. It can be extended to multiple alleles and can be used for autosomal or sex-linked loci. The allele frequencies and the form of expression (dominance, penetrance) must be specified. An algorithm using the method and involving an iterative procedure has been developed to calculate the genotype probabilities for practical use in livestock breeding. The method and algorithm were used to determine the accuracy of estimating genotype probabilities of sires for a female sex-limited trait, such as genetic variants of milk proteins. Data were similated and genotype probabilities estimated for 100 sires (20 replicates) with 3, 6 and 12 female offspring per sire, for different population frequencies, for additive and dominance gene action and for variable genotypic expression. Such simulation is useful in the design of testing systems for the use of information on specific genetic loci in selection.

Mycoplasma hyorhinis infection of pigs selectively bred for high and low immune response.

Pigs have been selected for high (H) or low (L) combined antibody and cell-mediated immune response to test the high immune response phenotype as a candidate for an indirect approach to improving health and productivity in livestock. Mycoplasma hyorhinis infection was induced in H and L pigs of the 4th generation of selection to test the hypothesis that immune response lines differ in response to infection. The major disease sign, arthritis, was more severe in the H pigs both clinically and at necropsy. M. hyorhinis was isolated at higher colony counts from synovial fluids of the H pigs. In contrast, pleuritis and peritonitis were less severe in pigs of the H than those of the L line. Pericarditis, although less in H than L pigs, did not differ significantly by line. Synovial fluid antibody to M. hyorhinis did not differ by line but H pigs produced serum antibody earlier and to a higher titre than did L pigs. Selection for H or L immune response therefore alters response to M. hyorhinis, however there is no indication of a consistent line-related health advantage.

Effect of selection on genetic parameters of correlated traits

SummaryChanges in genetic parameters of correlated traits due to the buildup of linkage (gametic phase) disequilibrium from repeated truncation selection on a single trait are studied. After several generations of selection, an equilibrium is approached where there are no further changes in genetic parameters and limiting values are reached. Formulae are derived under an infinitesimal model for these limiting values of genetic variances and covariances, heritabilities, and genetic correlations between traits directly and indirectly selected. Changes from generation zero to the limit in all these parameters become greater as heritability of the trait under direct selection increases and, to a lesser extent, as intensity of selection increases. Change in heritability of a trait under indirect selection also increases as the absolute value of the correlation between the trait under indirect and the trait under direct selection increases. The change is maximum when the initial value of heritability is close to 0.5 and insignificant when the initital value is close to zero or one. Change in the genetic correlation between the trait under direct selection and the trait under indirect selection is maximum when its initial value is close to ±0.6 and insignificant when its initial value is close to zero or ±1. Heritability of the trait indirectly selected and genetic correlation between that trait and the trait directly selected always decrease in absolute value, whereas genetic correlation between two traits indirectly selected can either decrease or increase in absolute value. It is suggested that use be made of formulae at selection equilibrium in the prediction of correlated responses after several generations of selection.

The influence of the swine major histocompatibility genes (SLA) on variation in serum immunoglobulin (Ig) concentration

Variation in serum IgG and IgM concentration was determined in three homozygous SLA-defined strains of miniature swine (SLAa, SLAc and SLAd) and one recombinant strain SLAg (ABcDd) as part of a study of SLA and other genetic effects on immune response. Data were obtained from 119 8-week-old piglets from 29 litters by 12 sires and analyzed using a SAS linear model for the effects of SLA haplotype, sire, dam, litter, sex, season of birth and sow parity. SLA haplotype (P less than 0.10) and other genetic effects due to sire (P less than or equal to 0.001) and dam (P less than or equal to 0.002) contributed to the variation in serum IgG concentrations. Season of birth and sow parity also affected IgG concentration as did litter effects. Least squares mean comparisons indicated that pigs of the dd, dg and gg haplotypes had significantly higher serum IgG than did pigs of the other haplotypes. Heritability estimates for IgG, calculated by paternal half-sib correlation, ranged from 0.31 to 0.27, indicating that selection for increased serum IgG concentrations would be possible. For serum IgM concentrations, only the effect of litter was significant at P less than or equal to 0.001 and P less than or equal to 0.009 by the radial immunodiffusion test read at 24 or 48 h. Since sire variance components estimates were negative, heritabilities were not calculated for IgM and are assumed to be zero.

Estimation of Genetic Parameters for Reproductive Traits in Pigs

Abstract Genetic parameters for sow productivity traits were calculated on data from the Swedish litter recording scheme for the years 1973–1980. Observations on 15 829 Landrace and 7 500 Yorkshire sows representing a total of 50132 farrowings were used in an estimation of variance and covariance components by iteration on Hendersons new method. Fixed effects in the model were herd-year, season, age at control, generation group of sire and breed of mate. Random effects were sire, litter and error. Significant herd-year interactions were detected for nearly all traits. Their magnitude was about 7–8% of error variance for first farrowing age, 3 % for first farrowing interval and 1 % for litter size. No consistent genetic trends were detected for any trait. The means of heritabilities, weighted by the inverses of their squared standard errors, and summed over breed and parity were 0.08, 0.10 and 0.06 for number born, number born alive and number at control, respectively. Genetic correlations between litter ...

Prediction of breeding values and dominance effects from mixed models with approximations of the dominance relationship matrix

Abstract A simulation study was performed to evaluate the performance of mixed model equations for estimation of additive and dominance effects with two different dominance relationship matrices, one contained all relationships, assuming no inbreeding, and the other contained only dominance relationships between full-sibs. The latter is equivalent to a model containing additive effects and a fullsib or litter effect. In both models, the effect of inbreeding depression on the mean was accounted for by a regression on the inbreeding coefficient. The simulated trait was controlled by 500 unlinked loci each with two alleles. Gene effects were equal at each locus and dominance was complete. Gene frequencies at each locus were either 0.2, 0.5 or 0.8. Phenotypic selection on performance was carried out over 10 generations. Both models performed similarly at each gene frequency. Estimates of additive effects showed no significant bias during the studied time span for either of the two models. Dominance effects were biased upwards for high gene frequencies and downwards for low gene frequencies. Predictions of additive effects were sensitive to priors assumed for dominance variance. Priors that were too large gave negative bias in genetic trend and vice versa.

Antibody avidity in Yorkshire pigs of high and low immune response groups.

Avidity indices of antibody to hen egg-white lysozyme (HEWL) were measured by chaotropic ion (SCN-) elution enzyme-linked immunosorbent assay (ELISA) in pigs grouped as high, control or low for various immune and innate resistance-related traits. The avidity index was the molar concentration of SCN- required to reduce by 50% the ELISA optical density value for a given serum. The index was independent of the amount of antibody. Eight- to ten-week-old Yorkshire pigs were immunized with HEWL and serum antibody measured by ELISA as one of five traits used to assign them to high, low or control response groups. Serum antibody avidity for HEWL was evaluated on Day 14 and Day 30 after primary (Day 0) and secondary (Day 14) immunization. The effects of response group, gender, litter, serum IgG concentration and anti-HEWL antibody on avidity were determined using a linear model. Antibody avidity indices varied amongst individuals. Mean avidity indices for sera collected on Days 14 and 30 were 0.61 +/- 0.43 and 1.22 +/- 0.56, with maximum indices of 2.64 and 2.86 respectively. Avidity of secondary response antibody was significantly higher (P less than or equal to 0.05). Pigs of the high response group had significantly higher secondary antibody avidity than those of the control (P less than or equal to 0.08) and low groups (P less than or equal to 0.01). Avidity index was positively correlated with antibody to HEWL on Days 14 and 30 but not to preimmunization serum IgG concentration or to other measured traits.

Effect of selection of swine for high and low immune responsiveness on monocyte superoxide anion production and class II MHC antigen expression.

Monocyte function was investigated in second (G2) and third (G3) generation pigs selected for high and low antibody and cell-mediated immune responsiveness. In groups of pigs from the high-and low-immune response lines, monocyte release of superoxide anion (O2-) was assayed in response to phorbol 12-myristate-13-acetate and expression of the Class II-MHC (MHC-II) antigens SLA-DR and SLA-DQ, determined using flow cytometry. Analysis of variance using a linear model demonstrated no significant intergroup differences in O2- production by lymphokine-activated monocytes from G2 pigs. In G3 pigs, there were no significant intergroup differences in the percentage of MHC-II+ cells or in the density of expression of either SLA-DR or SLA-DQ. In individual pigs, monocyte SLA-DR and SLA-DQ expression was similar in terms of the percentage of MHC-II+ cells and in the magnitude of MHC-II expression. Litter contributed significantly to variation in monocyte O2- production in G2 pigs (P < or = 0.005) and SLA-DQ (P < or = 0.01) expression. Although the lines differed significantly in correlates of antibody and cell-mediated immune response, there was no apparent effect of selection for high and low immune responsiveness in swine on monocyte O2- production and MHC-II expression.