Barbara Sherwood Lollar

Solubility trapping in formation water as dominant CO2 sink in natural gas fields

Injecting CO2 into deep geological strata is proposed as a safe and economically favourable means of storing CO2 captured from industrial point sources. It is difficult, however, to assess the long-term consequences of CO2 flooding in the subsurface from decadal observations of existing disposal sites. Both the site design and long-term safety modelling critically depend on how and where CO2 will be stored in the site over its lifetime. Within a geological storage site, the injected CO2 can dissolve in solution or precipitate as carbonate minerals. Here we identify and quantify the principal mechanism of CO2 fluid phase removal in nine natural gas fields in North America, China and Europe, using noble gas and carbon isotope tracers. The natural gas fields investigated in our study are dominated by a CO2 phase and provide a natural analogue for assessing the geological storage of anthropogenic CO2 over millennial timescales. We find that in seven gas fields with siliciclastic or carbonate-dominated reservoir lithologies, dissolution in formation water at a pH of 5–5.8 is the sole major sink for CO2. In two fields with siliciclastic reservoir lithologies, some CO2 loss through precipitation as carbonate minerals cannot be ruled out, but can account for a maximum of 18 per cent of the loss of emplaced CO2. In view of our findings that geological mineral fixation is a minor CO2 trapping mechanism in natural gas fields, we suggest that long-term anthropogenic CO2 storage models in similar geological systems should focus on the potential mobility of CO2 dissolved in water.

Carbon and Hydrogen Isotopic Fractionation during Anaerobic Biodegradation of Benzene

ABSTRACT Compound-specific isotope analysis has the potential to distinguish physical from biological attenuation processes in the subsurface. In this study, carbon and hydrogen isotopic fractionation effects during biodegradation of benzene under anaerobic conditions with different terminal-electron-accepting processes are reported for the first time. Different enrichment factors (ε) for carbon (range of −1.9 to −3.6‰) and hydrogen (range of −29 to −79‰) fractionation were observed during biodegradation of benzene under nitrate-reducing, sulfate-reducing, and methanogenic conditions. These differences are not related to differences in initial biomass or in rates of biodegradation. Carbon isotopic enrichment factors for anaerobic benzene biodegradation in this study are comparable to those previously published for aerobic benzene biodegradation. In contrast, hydrogen enrichment factors determined for anaerobic benzene biodegradation are significantly larger than those previously published for benzene biodegradation under aerobic conditions. A fundamental difference in the previously proposed initial step of aerobic versus proposed anaerobic biodegradation pathways may account for these differences in hydrogen isotopic fractionation. Potentially, C-H bond breakage in the initial step of the anaerobic benzene biodegradation pathway may account for the large fractionation observed compared to that in aerobic benzene biodegradation. Despite some differences in reported enrichment factors between cultures with different terminal-electron-accepting processes, carbon and hydrogen isotope analysis has the potential to provide direct evidence of anaerobic biodegradation of benzene in the field.

Desulfotomaculum and Methanobacterium spp. dominate a 4-to 5-kilometer-deep fault

ABSTRACT Alkaline, sulfidic, 54 to 60°C, 4 to 53 million-year-old meteoric water emanating from a borehole intersecting quartzite-hosted fractures >3.3 km beneath the surface supported a microbial community dominated by a bacterial species affiliated with Desulfotomaculum spp. and an archaeal species related to Methanobacterium spp. The geochemical homogeneity over the 650-m length of the borehole, the lack of dividing cells, and the absence of these microorganisms in mine service water support an indigenous origin for the microbial community. The coexistence of these two microorganisms is consistent with a limiting flux of inorganic carbon and SO42− in the presence of high pH, high concentrations of H2 and CH4, and minimal free energy for autotrophic methanogenesis. Sulfide isotopic compositions were highly enriched, consistent with microbial SO42− reduction under hydrologic isolation. An analogous microbial couple and similar abiogenic gas chemistry have been reported recently for hydrothermal carbonate vents of the Lost City near the Mid-Atlantic Ridge (D. S. Kelly et al., Science 307:1428-1434, 2005), suggesting that these features may be common to deep subsurface habitats (continental and marine) bearing this geochemical signature. The geochemical setting and microbial communities described here are notably different from microbial ecosystems reported for shallower continental subsurface environments.

Neon isotopes constrain convection and volatile origin in the Earth's mantle

Identifying the origin of primordial volatiles in the Earths mantle provides a critical test between models that advocate magma-ocean equilibration with an early massive solar-nebula atmosphere and those that require subduction of volatiles implanted in late accreting material. Here we show that neon isotopes in the convecting mantle, resolved in magmatic CO2 well gases, are consistent with a volatile source related to solar corpuscular irradiation of accreting material. This contrasts with recent results that indicated a solar-nebula origin for neon in mantle plume material, which is thought to be sampling the deep mantle. Neon isotope heterogeneity in different mantle sources suggests that models in which the plume source supplies the convecting mantle with its volatile inventory require revision. Although higher than accepted noble gas concentrations in the convecting mantle may reduce the need for a deep mantle volatile flux, any such flux must be dominated by the neon (and helium) isotopic signature of late accreting material.

Regional groundwater focusing of nitrogen and noble gases into the Hugoton-Panhandle giant gas field, USA

The Hugoton-Panhandle giant gas field, located across SW Kansas and the Texas and Oklahoma panhandles in the USA, is the case type example of high nitrogen concentrations in a natural gas being linked with high helium concentrations. We collected 31 samples from producing wells in a north-south traverse of the 350-km-long field. The samples reflect the previously observed north-south change in 4He/N2, with values changing from 0.020 to 0.049 respectively. 3He/4He, 21Ne/22Ne, and 40Ar/36Ar vary between 0.14–0.25 Ra, 0.0373–0.0508, and 818–1156 respectively, and are caused by quantifiable contributions from mantle, crustal, and atmosphere-derived sources. The atmosphere-derived 20Ne/36Ar ratios are indistinguishable from groundwater values. The crustal 4He/21Ne* and 4He/40Ar* ratios show a 60% excess of 4He compared to predicted production ratios in the crust and are typical of noble gases released from the shallow crust. The mantle 3He/N2 and groundwater-recharge 36Ar/N2 ratios enable us to rule out significant magmatic or atmosphere contributions to the gas field N2, which is dominantly crustal in origin. Correlated 20Ne/N2 and 4He/N2 shows mixing between two distinct crustal N2 components. One N2 component (N2*) is associated with the crustal 4He and groundwater-derived 20Ne, and the other with no resolvable noble gas contribution. Measured δ15NN2 values vary from +2.7‰ to +9.4‰. The N2* and non–He-associated N2 endmembers are inferred to have δ15NN2 = −3‰ and +13‰ and contribute from between 25–60% and 75–40% of the nitrogen respectively. The non–He-associated nitrogen is probably derived from relatively mature organic matter in the sedimentary column. The δ15NN2* value is not compatible with a crystalline or high-grade metamorphic source and, similar to the 4He, is inferred to be from a shallow or low metamorphic-grade source rock. 4He mass balance requires a regional crustal source, its association with significant magmatic 3He pointing to a tectonically active source to the west of the Hugoton system. The volume of groundwater required to source the 20Ne in the gas field demonstrates the viability of the groundwater system in providing the collection, transport, and focusing mechanism for the 4He and N2*. The N2*/20Ne ratio shows that the N2* transport must be in the aqueous phase, and that the degassing mechanism is probably contact between the regional groundwater system and the preexisting reservoir hydrocarbon gas phase.

Temporal Shifts in the Geochemistry and Microbial Community Structure of an Ultradeep Mine Borehole Following Isolation

A borehole draining a water-bearing dyke fracture at 3.2-km depth in a South African Au mine was isolated from the open mine environment. Geochemical, stable isotopic, nucleic acid-based, and phospholipid fatty acid (PLFA) analyses were employed as culture-independent means for assessing shifts in the microbial community and habitat as the system equilibrated with the native rock-water environment. Over a two-month period, the pH increased from 5.5 to 7.4, concurrent with a drop in pe from −2 to −3. Whereas rDNAs related to Desulfotomaculum spp. represented the major clone type encountered throughout, lipid biomarker profiling along with 16S rDNA clone library and terminal restriction fragment length polymorphism (T-RFLP) analyses indicated the emergence of other Gram-positive and deeply-branching lineages in samples during the later stages of the equilibration period. A biofilm that formed on the mine wall below the borehole produced abundant rDNAs related to the α Proteobacteria. β- and γ −Proteobacteria appeared to transiently bloom in the borehole shortly after isolation. Chemical modeling and sulfur isotope analyses of the borehole effluent indicated that microbial sulfate reduction was the major terminal electron-accepting process shortly after isolation, whereas Fe+3 reduction dominated towards the end of the experiment. The persistence of Desulfotomaculum-like bacteria throughout suggests that these organisms adapted to changing geochemical conditions as the redox decreased and pH increased following the isolation of the borehole from the mine atmosphere. The restoration of anaerobic aquatic chemistry to this borehole environment may have allowed microbiota indigenous to the local basalt aquifer to become more dominant among the diverse collection of bacterial lineages present in the borehole.

Distal degassing of radon and carbon dioxide on Galeras volcano, Colombia

Abstract Diffuse degassing at Galeras volcano, Colombia, was studied during three consecutive field seasons from 1993 to 1995. Measurements of222Rn and CO2 were made at 30 stations which were distributed on the volcano and on regional faults intersecting the edifice. Time series data show a decline of radon soil gas of up to 50% prior to a M 2.8 earthquake on 12 August 1993 at stations located near the epicenter and on the volcano near the location of earthquake swarms which occurred in April 1993, November–December 1993 and March 1995. The onset of volcanic seismic activity (‘tornillos’) on 9 August 1994 was preceded by anomalous soil gas increases at six stations located on the flanks of the volcano. On the southwestern flank, radon increased from 51 to 130 pCi/1 between 7 and 14 August, while on the northern flank, radon concentrations began to increase 19 days before the appearance of tornillos. In general, stations close to the crater showed the largest radon increases. Soil gas distributions and carbon isotope data suggest that diffuse degassing on the volcano is structurally controlled and that the abundance of CO2 in soil gas on the edifice cannot be taken as an indicator for the presence of magmatic gases. Radon soil gas concentrations and the222Rn emanating226Ra concentration increase near faults, whereas CO2 concentrations are more variable but commonly are higher on the volcano than near faults. δ13C values in soil CO2 vary between −8.5 and −23.2‰, with δ13C values more enriched than −15‰ found only in the vicinity of faults or sites prone to earthquake swarms. This suggests a magmatic origin of CO2 soil gas only near faults and an almost impermeable edifice in unfractured areas. The observed correlations between seismic activity and soil degassing provide further evidence that soil gas studies, especially when correlated to other methods of volcano surveillance such as seismicity and deformation, may be useful in forecasting volcanic and seismic events.

Microbial characterization of a subzero, hypersaline methane seep in the Canadian High Arctic.

We report the first microbiological characterization of a terrestrial methane seep in a cryo-environment in the form of an Arctic hypersaline (∼24% salinity), subzero (−5 °C), perennial spring, arising through thick permafrost in an area with an average annual air temperature of −15 °C. Bacterial and archaeal 16S rRNA gene clone libraries indicated a relatively low diversity of phylotypes within the spring sediment (Shannon index values of 1.65 and 1.39, respectively). Bacterial phylotypes were related to microorganisms such as Loktanella, Gillisia, Halomonas and Marinobacter spp. previously recovered from cold, saline habitats. A proportion of the bacterial phylotypes were cultured, including Marinobacter and Halomonas, with all isolates capable of growth at the in situ temperature (−5 °C). Archaeal phylotypes were related to signatures from hypersaline deep-sea methane-seep sediments and were dominated by the anaerobic methane group 1a (ANME-1a) clade of anaerobic methane oxidizing archaea. CARD-FISH analyses indicated that cells within the spring sediment consisted of ∼84.0% bacterial and 3.8% archaeal cells with ANME-1 cells accounting for most of the archaeal cells. The major gas discharging from the spring was methane (∼50%) with the low CH4/C2+ ratio and hydrogen and carbon isotope signatures consistent with a thermogenic origin of the methane. Overall, this hypersaline, subzero environment supports a viable microbial community capable of activity at in situ temperature and where methane may behave as an energy and carbon source for sustaining anaerobic oxidation of methane-based microbial metabolism. This site also provides a model of how a methane seep can form in a cryo-environment as well as a mechanism for the hypothesized Martian methane plumes.

Measurement of a Doubly Substituted Methane Isotopologue, 13CH3D, by Tunable Infrared Laser Direct Absorption Spectroscopy

Methane is an important energy resource and significant long-lived greenhouse gas. Carbon and hydrogen isotope ratios have been used to better constrain the sources of methane but interpretations based on these two parameters alone can often be inconclusive. The precise measurement of a doubly substituted methane isotopologue, (13)CH3D, is expected to add a critical new dimension to source signatures by providing the apparent temperature at which methane was formed or thermally equilibrated. We have developed a new method to precisely determine the relative abundance of (13)CH3D by using tunable infrared laser direct absorption spectroscopy (TILDAS). The TILDAS instrument houses two continuous wave quantum cascade lasers; one tuned at 8.6 μm to measure (13)CH3D, (12)CH3D, and (12)CH4, and the other at 7.5 μm to measure (13)CH4. With the use of an astigmatic Herriott cell with an effective path length of 76 m, a precision of 0.2‰ (2σ) was achieved for the measurement of (13)CH3D abundance in ca. 10 mL STP (i.e., 0.42 mmol) pure methane samples. Smaller quantity samples (ca. 0.5 mL STP) can be measured at lower precision. The accuracy of the Δ(13)CH3D measurement is 0.7‰ (2σ), evaluated by thermally equilibrating methane with a range of δD values. The precision of ±0.2‰ corresponds to uncertainties of ±7 °C at 25 °C and ±20 °C at 200 °C for estimates of apparent equilibrium temperatures. The TILDAS instrument offers a simple and precise method to determine (13)CH3D in natural methane samples to distinguish geological and biological sources of methane in the atmosphere, hydrosphere, and lithosphere.

Heterotrophic and Autotrophic Microbial Populations in Cold Perennial Springs of the High Arctic

ABSTRACT The saline springs of Gypsum Hill in the Canadian high Arctic are a rare example of cold springs originating from deep groundwater and rising to the surface through thick permafrost. The heterotrophic bacteria and autotrophic sulfur-oxidizing bacteria (up to 40% of the total microbial community) isolated from the spring waters and sediments were classified into four phyla (Actinobacteria, Bacteroidetes, Firmicutes, and Proteobacteria) based on 16S rRNA gene analysis; heterotrophic isolates were primarily psychrotolerant, salt-tolerant, facultative anaerobes. Some of the isolates contained genes for thiosulfate oxidation (soxB) and anoxygenic photosynthesis (pufM), possibly enabling the strains to better compete in these sulfur-rich environments subject to long periods of illumination in the Arctic summer. Although leucine uptake by the spring water microbial community was low, CO2 uptake was relatively high under dark incubation, reinforcing the idea that primary production by chemoautotrophs is an important process in the springs. The small amounts of hydrocarbons in gases exsolving from the springs (0.38 to 0.51% CH4) were compositionally and isotopically consistent with microbial methanogenesis and possible methanotrophy. Anaerobic heterotrophic sulfur oxidation and aerobic autotrophic sulfur oxidation activities were demonstrated in sediment slurries. Overall, our results describe an active microbial community capable of sustainability in an extreme environment that experiences prolonged periods of continuous light or darkness, low temperatures, and moderate salinity, where life seems to rely on chemolithoautotrophy.