Bartosz Adamczyk

Nitrogen transformations in boreal forest soils—does composition of plant secondary compounds give any explanations?

Two major groups of plant secondary compounds, phenolic compounds and terpenes, may according to current evidence mediate changes in soil C and N cycling, but their exact role and importance in boreal forest soils are largely unknown. In this review we discuss the occurrence of these compounds in forest plants and soils, the great challenges faced when their concentrations are measured, their possible effects in regulating soil C and N transformations and finally, we attempt to evaluate their role in connection with certain forest management practices. In laboratory experiments, volatile monoterpenes, in the concentrations found in the coniferous soil atmosphere, have been shown to inhibit net nitrogen mineralization and nitrification; they probably provide a C source to part of the soil microbial population but are toxic to another part. However, there is a large gap in our knowledge of the effects of higher terpenes on soil processes. According to results from laboratory experiments, an important group of phenolic compounds, condensed tannins, may also affect microbial processes related to soil C and N cycling; one mechanism is binding of proteins and certain other organic N-containing compounds. Field studies revealed interesting correlations between the occurrence of terpenes or phenolic compounds and C or net N mineralization in forest soils; in some cases these correlations point in the same direction as do the results from laboratory experiments, but not always. Different forest management practices may result in changes in both the quantity and quality of terpenes and phenolic compounds entering the soil. Possible effects of tree species composition, clear-cutting and removal of logging residue for bioenergy on plant secondary compound composition in soil are discussed in relation to changes observed in soil N transformations.

Protein precipitation by tannins in soil organic horizon and vegetation in relation to tree species

The aim of this study was to compare the concentration of tannins and their capacity to precipitate proteins in the dominant species of ground vegetation (Deschampsia flexuosa (L.) Trin., Pleurozium schreberi (Brid.) Mitt., Vaccinium myrtillus (L.), and Vaccinium vitis-idaea (L.)) and in different layers of the soil organic horizon (litter layer—L, fermentation layer—F, humified layer—H) under silver birch (Betula pendula Roth.), Norway spruce (Picea abies (L.) Karst.), and Scots pine (Pinus sylvestris L.). Total tannin concentrations were also measured in leaves or needles of birch, spruce, and pine. The study site is located in Kivalo, northern Finland, close to the Arctic Circle. Differences in total tannin concentrations in ground vegetation were due mainly to species, with Vaccinium species having the highest values. The influence of the dominant tree species was less important. Protein precipitating capacity was dependent on plant species; the highest values occurred in Vaccinium species and spruce. Because of their relatively high protein precipitating capacity but low total tannin concentration, D. flexuosa and P. schreberi seemed to have more astringent tannins. Concentrations of total tannin and hydrolyzable tannin in the soil organic horizon differed depending on the layer and tree species. In general, the highest concentrations of total tannins were found under birch and spruce in the L layer and the lowest concentrations under pine. Protein precipitating capacity was usually the lowest in the H layer and highest under birch and spruce in the F and H layers. We showed that lignin from rotted pine wood can also precipitate proteins but only small amounts; additionally, lignin can be an important source of error for soil total tannin measurements.

Proteins as nitrogen source for plants: a short story about exudation of proteases by plant roots.

Interest in the problem of plant nitrogen nutrition is increasing. Certain plants can use not only inorganic nitrogen, but also intact amino acids and short peptides. According to our studies, the roots of several agricultural and wild-living plants are able to exude proteases and by using them to create a pool of accessible N. This mini-review offers an overview of the problem of protease exudation by plant roots and its potential role in plant nitrogen nutrition.

Degradation of proteins by enzymes exuded by Allium porrum roots - a potentially important strategy for acquiring organic nitrogen by plants.

Nitrogen is one of the crucial elements that regulate plant growth and development. It is well-established that plants can acquire nitrogen from soil in the form of low-molecular-mass compounds, namely nitrate and ammonium, but also as amino acids. Nevertheless, nitrogen in the soil occurs mainly as proteins or proteins complexed with other organic compounds. Proteins are believed not to be available to plants. However, there is increasing evidence to suggest that plants can actively participate in proteolysis by exudation of proteases by roots and can obtain nitrogen from digested proteins. To gain insight into the process of organic nitrogen acquisition from proteins by leek roots (Allium porrum L. cv. Bartek), casein, bovine serum albumin and oxidized B-chain of insulin were used; their degradation products, after exposure to plant culture medium, were studied using liquid chromatography-mass spectrometry (LC-MS). Casein was degraded to a great extent, but the level of degradation of bovine serum albumin and the B-chain of insulin was lower. Proteases exuded by roots cleaved proteins, releasing low-molecular-mass peptides that can be taken up by roots. Various peptide fragments produced by digestion of the oxidized B-chain of insulin suggested that endopeptidase, but also exopeptidase activity was present. After identification, proteases were similar to cysteine protease from Arabidopsis thaliana. In conclusion, proteases exuded by roots may have great potential in the plant nitrogen nutrition.

Influence of diterpenes (colophony and abietic acid) and a triterpene (beta-sitosterol) on net N mineralization, net nitrification, soil respiration, and microbial biomass in birch soil

The aim of this study was to examine the effect of common diterpenes (colophony, abietic acid) and triterpene (beta-sitosterol) on carbon (C) and nitrogen (N) transformations in soil under birch (Betula pendula L.). Samples were taken from the organic layer at two study sites, Kivalo (N-poor soil) and Kerimäki (N-rich soil), and incubated with the above-mentioned terpenes in laboratory conditions. Carbon dioxide evolution (C mineralization), net N mineralization, nitrification, and N and C in microbial biomass were measured. All these terpenes increased C mineralization, but decreased net N mineralization. The potential to decrease net N mineralization depended on amount of terpenes, with a stronger effect at a higher amount. Net nitrification in Kerimäki soil (N-rich soil) decreased but was not completely inhibited by terpenes. Effect of terpenes on soil microbial biomass C and N was not so clear, but they tended to increase both. Our study suggests that higher terpenes can act as a carbon source for soil microbial communities.

Tannins and Their Complex Interaction with Different Organic Nitrogen Compounds and Enzymes: Old Paradigms versus Recent Advances

Abstract Tannins, an abundant group of plant secondary compounds, raise interest in different fields of science, owing to their unique chemical characteristics. In chemical ecology, tannins play a crucial role in plant defense against pathogens, herbivores, and changing environmental conditions. In the food industry and in medicine, tannins are important because of their proven positive effect on human health and disease treatment. Such wide interests fueled studies on tannin chemistry, especially on their flagship ability to precipitate proteins. In this Review, we expand the basic knowledge on tannin chemistry to the newest insights from the field. We focus especially on tannin reactions with different non‐protein organic N compounds, as well as the complex interactions of tannins with enzymes, resulting in either an increase or decrease in enzyme activity.

Proteoid Roots and Exudation of Proteases by Plant Roots

Among the numerous strategies for improving P or N uptake by plants, development of proteoid roots and exudation of proteases can be found. Proteoid roots, which develop as a response to P deficiency during exudative burst secrete carboxylates and acid phosphatase, which improves P uptake. Proteoid root morphology and anatomy, factors that influence development and their role in plant nutrition, are described. In addition, this chapter summarizes our knowledge of the recently discovered phenomenon of protease secretion by intact plant roots, including their biochemical characterization and their potential role in the nitrogen nutrition of plants.

Inter-specific variability in protein use by two vegetable crop species

It is now well-known that plants can uptake not only inorganic nitrogen but also organic nitrogen compounds, mainly amino acids. However, soil proteins are the main pool of amino acids. According to our earlier papers, plants can get access to this source of nitrogen using root-secreted proteases, but the level of proteolytic activity of such root-secreted proteases is species-specific. Our aim was to compare the use of protein as nitrogen source by two vegetable crops having high (Allium porrum) or low (Lactuca sativa) level of activity of root-secreted proteases. Seedlings were cultivated on Murashige and Skoog medium (MS), MS medium without inorganic nitrogen, MS medium without inorganic nitrogen, but with casein in concentration of 0.01%, 0.1% or 1%. Fresh weight of shoot of A. porrum was the highest for seedlings growing on culture medium with casein, but shoots of L. sativa obtained the highest weight growing on the culture medium with inorganic nitrogen. Allium porrum seedlings obtained 15-fold higher proteolytic activity in the culture medium than L. sativa. Seedlings of A. porrum using such high activity of proteases secreted by roots could provide a substantial pool of amino acids for intensive growth. The current studies conducted on A. porrum and L. sativa suggest that the efficiency of protein use in nitrogen nutrition by plants is species-specific.

Characterization of proteases secreted by leek roots

Some characteristics of root-secreted proteases were studied. We measured their molecular weights and mechanism of BSA digestion in comparison to endogenous root proteases. We related these studies to culture medium N composition. The seedlings of Allium porrum L. (cv. Bartek) were cultivated on MS medium, MS without inorganic nitrogen (MS-IN), and MS without IN, but with 0.1% casein (MS-IN + 0.1% casein). Electrophoretic study showed that root-secreted proteases had one isoform with a mol wt of 45 kD, regardless of medium N composition. Difference in molecular weights of root-secreted proteases and endogenous root proteases active under used conditions (>66 kD) provide us another strong evidence that root-secreted proteases were not just leaking from the roots, but they were secreted. Proteases exuded by roots degraded BSA in a similar way as endogenous proteases, with only one SDS-PAGE-detectable product of degradation. Our results may be a powerful tool in the extraction and purification of these enzymes and also in proteomic studies.