Béla Viskolcz

Molecular Surgery Concept from Bench to Bedside: A Focus on TRPV1+ Pain-Sensing Neurons

“Molecular neurosurgery” is emerging as a new medical concept, and is the combination of two partners: (i) a molecular neurosurgery agent, and (ii) the cognate receptor whose activation results in the selective elimination of a specific subset of neurons in which this receptor is endogenously expressed. In general, a molecular surgery agent is a selective and potent ligand, and the target is a specific cell type whose elimination is desired through the molecular surgery procedure. These target cells have the highest innate sensitivity to the molecular surgery agent usually due to the highest receptor density being in their plasma membrane. The interaction between the ligand and its receptor evokes an overactivity of the receptor. If the receptor is a ligand-activated non-selective cation channel, the overactivity of receptor leads to excess Ca2+ and Na+ influx into the cell and finally cell death. One of the best known examples of such an interaction is the effect of ultrapotent vanilloids on TRPV1-expressing pain-sensing neurons. One intrathecal resiniferatoxin (RTX) dose allows for the receptor-mediated removal of TRPV1+ neurons from the peripheral nervous system. The TRPV1 receptor-mediated ion influx induces necrotic processes, but only in pain-sensing neurons, and usually within an hour. Besides that, target-specific apoptotic processes are also induced. Thus, as a nano-surgery scalpel, RTX removes the neurons responsible for generating pain and inflammation from the peripheral nervous system providing an option in clinical management for the treatment of morphine-insensitive pain conditions. In the future, the molecular surgery concept can also be exploited in cancer research for selectively targeting the specific tumor cell.

Industrial application of molecular computations on the dimerization of methylene diphenyl diisocyanate

In the polyurethane industry, the undesirable dimerization and oligomerization of methylene diphenyl diisocyanate (MDI) are unwanted and problematic phenomena. The relative ratios of these dimers and oligomers have a strong temperature dependence, and they can be formed below and above the melting point of MDI (316.15xa0K). All possible structures of the isomers and their dimers were optimized, and then their thermodynamic functions were calculated at the M06-2X/6-31(d,p) level of theory. The dimerization of isocyanate groups can result in four-, five-, and six-membered rings. The four-membered ring is the most stable one due to the aromatic electrons in π orbitals of the uretidione ring. The relative stability of the dimers is therefore influenced by the steric effects and the relative positions of isocyanate groups. The most stable dimer is the one which is formed from the reaction of the p,o- and o,p-MDI isomers due to their intrinsic interactions, which were classified, and their impact on dimer stability was discussed.

Synthesis Optimization and Characterization of Nitrogen-Doped Bamboo-Shaped Carbon Nanotubes

Nitrogen-doped bamboo-shaped carbon nanotubes (N-BCNT) were synthesized from butylamine using the catalytic chemical vapor deposition (CCVD) process. The carbon source was nitrogen content organic molecules, namely butylamine. Reaction conditions such as temperature, amount of carbon source and catalyst were optimized to produce high quality N-BCNT samples. The nitrogen content was measured by CHNS element analysis, while the butylamine conversion was calculated based on the weight of deposited carbon materials. The bamboo structure of the nanotubes was examined by high resolution transmission electron microscopy (HRTEM). Two different types of nitrogen incorporation forms, the pyridinic and the graphitic, were identified in the samples by X-ray photoelectron spectroscopy (XPS). The lattice defects were measured by Raman spectroscopy. The proportion of defect sites influenced by the nitrogen content which can be controlled by the synthesis temperature. The optimal conditions were identified for the economical synthesis of N-BCNTs with high nitrogen content for various applications.

Glycerol carbonate as a fuel additive for a sustainable future

Policy-makers and researchers have been considering a shift from conventional fossil fuels to renewable sources due to the growing concerns over global warming and diminishing oil reserves. Biodiesel, a renewable bio-driven fuel, can be derived from vegetable oils and animal fats, and is considered to be bio-degradable, non-toxic and environmentally friendly. The cetane number and calorific power of biodiesel are quite similar to those of conventional diesel. Crude glycerol of about 10–20% by volume appears as a byproduct in biodiesel production. The increasing demand for biodiesel has led to a substantial increase of glycerol supply in the global market and a dramatic fall in the price of glycerol which has warranted alternative uses of glycerol. One potential way to deal with the crude glycerol overflow is to convert it to glycerol carbonate (GC) and use GC as a fuel or fuel additive. Prior studies have indicated that carbonate esters can significantly reduce particulate emissions during engine combustion. In this work, we have explored possible reaction pathways in the initial stage of glycerol carbonate pyrolysis. Ab initio/RRKM-master equation methods are employed to differentiate various reaction pathways and to obtain the pressure- and temperature-dependence of the major channels. We have found that glycerol carbonate decomposes almost exclusively to produce CO2 and 3-hydroxypropanal over 800–2000 K and radical forming channels are unimportant. As 3-hydroxypropanal is one of the main products of GC decomposition, and aldehydes are known to have a very high impact on soot reduction, we conclude that GC has great potential for cleaner combustion as a fuel additive.

Nitrogen-doped bamboo-shaped carbon nanotube supported catalysts for heterogeneous hydrogenation. The effect of surface polarity

Nitrogen-doped bamboo-shaped carbon nanotubes (N-BCNTs) were produced by catalytic chemical vapor deposition using butylamine as carbon sources. The morphology of the nanotubes and the type of nitrogen incorporation was studied. The surface polarity of the synthetized nanotubes was tuned by using three different oxidizing agents, H2SO4/HNO3 mixture, cc. HNO3, and H2O2. It has been shown that due to the oxidation, the presence of oxygen containing functional groups (–COOH, –OH), and therefore, the hydrophilic character of the N-BCNTs considerably increased. The functionalized N-BCNTs and non-treated CNTs were used as support materials to prepare 5xa0wt% Pd catalysts. The synthesized Pd nanocomposites were successfully tested in liquid phase heterogeneous hydrogenation (octadecene to octadecane). Although, the catalytic activity decreased by the increasing surface polarity of the nanotubes, which can be attributed to the non-polar reactants, this effect could be beneficial in case of hydrophilic systems.

High efficiency two-photon uncaging coupled by the correction of spontaneous hydrolysis

Two-photon (TP) uncaging of neurotransmitter molecules is the method of choice to mimic and study the subtleties of neuronal communication either in the intact brain or in slice preparations. However, the currently available caged materials are just at the limit of their usability and have several drawbacks. The local and focal nature of their use may for example be jeopardized by a high spontaneous hydrolysis rate of the commercially available compounds with increased photochemical release rate. Here, using quantum chemical modelling we show the mechanisms of hydrolysis and two-photon activation, and synthesized more effective caged compounds. Furthermore, we have developed a new enzymatic elimination method removing neurotransmitters inadvertently escaping from their compound during experiment. This method, usable both in one and two-photon experiments, allows for the use of materials with an increased rate of photochemical release. The efficiency of the new compound and the enzymatic method and of the new compound are demonstrated in neurophysiological experiments.

Development and Application of Carbon-Layer-Stabilized, Nitrogen-Doped, Bamboo-Like Carbon Nanotube Catalysts in CO2 Hydrogenation

Abstract Nitrogen‐doped, bamboo‐like carbon nanotubes (BCNTs) were synthesized from butylamine by catalytic chemical vapor deposition (CCVD method). The nanotubes were oxidized by H2SO4/HNO3 treatment and used to prepare calcium alginate gelled BCNT spheres. These beads were first carbonized and then Pd, Rh and Ni nanoparticles were anchored on the surface of the spheres. These systems were then applied as catalysts in CO2 hydrogenation. The BCNT support was examined by Raman spectroscopy, dynamic light scattering (DLS) and X‐ray photoelectron spectroscopy (XPS). The prepared catalysts were characterized by HRTEM and SEM. The oxidation pretreatment of BCNTs was successful, with the electrokinetic potential of the water‐based dispersion of BCNTs measuring −59.9u2005mV, meaning the nanotube dispersion is stable. Pyridinic and graphitic types of incorporated nitrogen centers were identified in the structure of the nanotubes, according to the XPS measurements. The Pd‐containing BCNT sphere catalyst was the most efficient in the catalytic studies. The highest conversion was reached on the Pd catalyst at 723u2005K, as well as at 873u2005K. The difference in the formation rate of CO was much less at 873u2005K between the Pd and Rh compared to the 723u2005K values. Accordingly, the application of Pd‐containing BCNT/carbon‐supported catalyst favored the generation of CO. However, the Ni‐BCNT/carbon catalyst leads to the formation of CH4 as the major product.

A hidden active site in the potential drug target Mycobacterium tuberculosis dUTPase is accessible through small-amplitude protein conformational changes

dUTPases catalyze the hydrolysis of dUTP into dUMP and pyrophosphate to maintain the proper nucleotide pool for DNA metabolism. Recent evidence suggests that dUTPases may also represent a selective drug target in mycobacteria because of the crucial role of these enzymes in maintaining DNA integrity. Nucleotide-hydrolyzing enzymes typically harbor a buried ligand-binding pocket at interdomain or intersubunit clefts, facilitating proper solvent shielding for the catalyzed reaction. The mechanism by which substrate binds this hidden pocket and product is released in dUTPases is unresolved because of conflicting crystallographic and spectroscopic data. We sought to resolve this conflict by using a combination of random acceleration molecular dynamics (RAMD) methodology and structural and biochemical methods to study the dUTPase from Mycobacterium tuberculosis. In particular, the RAMD approach used in this study provided invaluable insights into the nucleotide dissociation process that reconciles all previous experimental observations. Specifically, our data suggest that nucleotide binding takes place as a small stretch of amino acids transiently slides away and partially uncovers the active site. The in silico data further revealed a new dUTPase conformation on the pathway to a relatively open active site. To probe this model, we developed the Trp21 reporter and collected crystallographic, spectroscopic, and kinetic data that confirmed the interaction of Trp21 with the active site shielding C-terminal arm, suggesting that the RAMD method is effective. In summary, our computational simulations and spectroscopic results support the idea that small loop movements in dUTPase allow the shuttlingof the nucleotides between the binding pocket and the solvent.