Benjamin D. Ferguson
University of Chicago
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Featured researches published by Benjamin D. Ferguson.
Journal of Biological Chemistry | 2010
Leonardo Faoro; Patrick A. Singleton; Gustavo M. Cervantes; Frances E. Lennon; Nicholas W. Choong; Rajani Kanteti; Benjamin D. Ferguson; Aliya N. Husain; Maria Tretiakova; Nithya Ramnath; Everett E. Vokes; Ravi Salgia
Non-small cell lung cancer (NSCLC) has a poor prognosis and improved therapies are needed. Expression of EphA2 is increased in NSCLC metastases. In this study, we investigated EphA2 mutations in NSCLC and examined molecular pathways involved in NSCLC. Tumor and cell line DNA was sequenced. One EphA2 mutation was modeled by expression in BEAS2B cells, and functional and biochemical studies were conducted. A G391R mutation was detected in H2170 and 2/28 squamous cell carcinoma patient samples. EphA2 G391R caused constitutive activation of EphA2 with increased phosphorylation of Src, cortactin, and p130Cas. Wild-type (WT) and G391R cells had 20 and 40% increased invasiveness; this was attenuated with knockdown of Src, cortactin, or p130Cas. WT and G391R cells demonstrated a 70% increase in focal adhesion area. Mammalian target of rapamycin (mTOR) phosphorylation was increased in G391R cells with increased survival (55%) compared with WT (30%) and had increased sensitivity to rapamycin. A recurrent EphA2 mutation is present in lung squamous cell carcinoma and increases tumor invasion and survival through activation of focal adhesions and actin cytoskeletal regulatory proteins as well as mTOR. Further study of EphA2 as a therapeutic target is warranted.
PLOS ONE | 2013
Benjamin D. Ferguson; Ren Liu; Cleo E. Rolle; Yi-Hung Carol Tan; Valery Krasnoperov; Rajani Kanteti; Maria Tretiakova; Gustavo M. Cervantes; Rifat Hasina; Robyn D. Hseu; A. John Iafrate; Theodore Karrison; Mark K. Ferguson; Aliya N. Husain; Leonardo Faoro; Everett E. Vokes; Parkash S. Gill; Ravi Salgia
Despite progress in locoregional and systemic therapies, patient survival from lung cancer remains a challenge. Receptor tyrosine kinases are frequently implicated in lung cancer pathogenesis, and some tyrosine kinase inhibition strategies have been effective clinically. The EphB4 receptor tyrosine kinase has recently emerged as a potential target in several other cancers. We sought to systematically study the role of EphB4 in lung cancer. Here, we demonstrate that EphB4 is overexpressed 3-fold in lung tumors compared to paired normal tissues and frequently exhibits gene copy number increases in lung cancer. We also show that overexpression of EphB4 promotes cellular proliferation, colony formation, and motility, while EphB4 inhibition reduces cellular viability in vitro, halts the growth of established tumors in mouse xenograft models when used as a single-target strategy, and causes near-complete regression of established tumors when used in combination with paclitaxel. Taken together, these data suggest an important role for EphB4 as a potential novel therapeutic target in lung cancer. Clinical trials investigating the efficacy of anti-EphB4 therapies as well as combination therapy involving EphB4 inhibition may be warranted.
Cancer Research | 2013
Rifat Hasina; Nathan M. Mollberg; Ichiro Kawada; Karun Mutreja; Geetanjali Kanade; Soheil Yala; Mosmi Surati; Ren Liu; Xiuqing Li; Yue Zhou; Benjamin D. Ferguson; Vidya Nallasura; Kenneth Cohen; Elizabeth Hyjek; Jeffery Mueller; Rajani Kanteti; Essam El Hashani; Dorothy Kane; Yutaka Shimada; Mark W. Lingen; Aliya N. Husain; Mitchell C. Posner; Irving Waxman; Victoria M. Villaflor; Mark K. Ferguson; Lyuba Varticovski; Everett E. Vokes; Parkash S. Gill; Ravi Salgia
Esophageal cancer incidence is increasing and has few treatment options. In studying receptor tyrosine kinases associated with esophageal cancers, we have identified EPHB4 to be robustly overexpressed in cell lines and primary tumor tissues. In total, 94 squamous cell carcinoma, 82 adenocarcinoma, 25 dysplasia, 13 Barrett esophagus, and 25 adjacent or unrelated normal esophageal tissues were evaluated by immunohistochemistry. EPHB4 expression was significantly higher in all the different histologic categories than in adjacent normal tissues. In 13 esophageal cancer cell lines, 3 of the 9 SCC cell lines and 2 of the 4 adenocarcinomas expressed very high levels of EPHB4. An increased gene copy number ranging from 4 to 20 copies was identified in a subset of the overexpressing patient samples and cell lines. We have developed a novel 4-nitroquinoline 1-oxide (4-NQO)-induced mouse model of esophageal cancer that recapitulates the EPHB4 expression in humans. A specific small-molecule inhibitor of EPHB4 decreased cell viability in a time- and dose-dependent manner in 3 of the 4 cell lines tested. The small-molecule inhibitor and an EPHB4 siRNA also decreased cell migration (12%-40% closure in treated vs. 60%-80% in untreated), with decreased phosphorylation of various tyrosyl-containing proteins, EphB4, and its downstream target p125FAK. Finally, in a xenograft tumor model, an EPHB4 inhibitor abrogated tumor growth by approximately 60% compared with untreated control. EphB4 is robustly expressed and potentially serves as a novel biomarker for targeted therapy in esophageal cancers.
BMC Cancer | 2013
Ren Liu; Benjamin D. Ferguson; Yue Zhou; Kranthi Naga; Ravi Salgia; Parkash S. Gill; Valery Krasnoperov
BackgroundMalignant pleural mesothelioma (MPM) often develops decades following exposure to asbestos. Current best therapy produces a response in only half of patients, and the median survival with this therapy remains under a year. A search for novel targets and therapeutics is underway, and recently identified targets include VEGF, Notch, and EphB4-Ephrin-B2. Each of these targets has dual activity, promoting tumor cell growth as well as tumor angiogenesis.MethodsWe investigated EphB4 expression in 39 human mesothelioma tissues by immunohistochemistry. Xenograft tumors established with human mesothelioma cells were treated with an EphB4 inhibitor (monomeric soluble EphB4 fused to human serum albumin, or sEphB4-HSA). The combinatorial effect of sEphB4-HSA and biologic agent was also studied.ResultsEphB4 was overexpressed in 72% of mesothelioma tissues evaluated, with 85% of epithelioid and 38% of sarcomatoid subtypes demonstrating overexpression. The EphB4 inhibitor sEphB4-HSA was highly active as a single agent to inhibit tumor growth, accompanied by tumor cell apoptosis and inhibition of PI3K and Src signaling. Combination of sEphB4-HSA and the anti-VEGF antibody (Bevacizumab) was superior to each agent alone and led to complete tumor regression.ConclusionEphB4 is a potential therapeutic target in mesothelioma. Clinical investigation of sEphB4-HSA as a single agent and in combination with VEGF inhibitors is warranted.
Journal of Clinical Bioinformatics | 2011
Mosmi Surati; Matthew Robinson; Suvobroto Nandi; Leonardo Faoro; Carley Demchuk; Cleo E. Rolle; Rajani Kanteti; Benjamin D. Ferguson; Rifat Hasina; Tara Gangadhar; April K. Salama; Qudsia Arif; Colin Kirchner; Eneida A. Mendonça; Nicholas Campbell; Suwicha Limvorasak; Victoria M. Villaflor; Thomas A. Hensing; Thomas Krausz; Everett E. Vokes; Aliya N. Husain; Mark K. Ferguson; Theodore Karrison; Ravi Salgia
BackgroundIn recent years, there has been tremendous growth and interest in translational research, particularly in cancer biology. This area of study clearly establishes the connection between laboratory experimentation and practical human application. Though it is common for laboratory and clinical data regarding patient specimens to be maintained separately, the storage of such heterogeneous data in one database offers many benefits as it may facilitate more rapid accession of data and provide researchers access to greater numbers of tissue samples.DescriptionThe Thoracic Oncology Program Database Project was developed to serve as a repository for well-annotated cancer specimen, clinical, genomic, and proteomic data obtained from tumor tissue studies. The TOPDP is not merely a library--it is a dynamic tool that may be used for data mining and exploratory analysis. Using the example of non-small cell lung cancer cases within the database, this study will demonstrate how clinical data may be combined with proteomic analyses of patient tissue samples in determining the functional relevance of protein over and under expression in this disease.Clinical data for 1323 patients with non-small cell lung cancer has been captured to date. Proteomic studies have been performed on tissue samples from 105 of these patients. These tissues have been analyzed for the expression of 33 different protein biomarkers using tissue microarrays. The expression of 15 potential biomarkers was found to be significantly higher in tumor versus matched normal tissue. Proteins belonging to the receptor tyrosine kinase family were particularly likely to be over expressed in tumor tissues. There was no difference in protein expression across various histologies or stages of non-small cell lung cancer. Though not differentially expressed between tumor and non-tumor tissues, the over expression of the glucocorticoid receptor (GR) was associated improved overall survival. However, this finding is preliminary and warrants further investigation.ConclusionThough the database project is still under development, the application of such a database has the potential to enhance our understanding of cancer biology and will help researchers to identify targets to modify the course of thoracic malignancies.
Growth Factors Journal | 2014
Benjamin D. Ferguson; Maria Tretiakova; Mark W. Lingen; Parkash S. Gill; Ravi Salgia
Abstract Solid malignancies are often characterized by overexpression of various receptor tyrosine kinases (RTKs) against which many targeted therapies are currently in use and in active development. EPHB4 has recently emerged as a frequently overexpressed RTK in many types of cancer. Here, we demonstrate expression patterns of EPHB4 in two solid malignancies: squamous cell carcinoma of the head and neck (HNSCC) and renal cell carcinoma (RCC), by immunohistochemical analysis. We demonstrate the first association between EPHB4 expression and progression of HNSCC from normal tissue to dysplasia and to cancer. Interestingly, most RCC subtypes exhibited expression patterns that were opposite from that found in HNSCC, possibly owing to their unique biology and high degree of organ and tumor vasculature. Taken together, these results suggest a possible role for EPHB4 as a therapeutic target in these malignancies.
Journal of Visualized Experiments | 2011
Mosmi Surati; Matthew Robinson; Suvobroto Nandi; Leonardo Faoro; Carley Demchuk; Rajani Kanteti; Benjamin D. Ferguson; Tara C. Gangadhar; Thomas A. Hensing; Rifat Hasina; Aliya N. Husain; Mark K. Ferguson; Theodore Karrison; Ravi Salgia
The Thoracic Oncology Program Database Project was created to serve as a comprehensive, verified, and accessible repository for well-annotated cancer specimens and clinical data to be available to researchers within the Thoracic Oncology Research Program. This database also captures a large volume of genomic and proteomic data obtained from various tumor tissue studies. A team of clinical and basic science researchers, a biostatistician, and a bioinformatics expert was convened to design the database. Variables of interest were clearly defined and their descriptions were written within a standard operating manual to ensure consistency of data annotation. Using a protocol for prospective tissue banking and another protocol for retrospective banking, tumor and normal tissue samples from patients consented to these protocols were collected. Clinical information such as demographics, cancer characterization, and treatment plans for these patients were abstracted and entered into an Access database. Proteomic and genomic data have been included in the database and have been linked to clinical information for patients described within the database. The data from each table were linked using the relationships function in Microsoft Access to allow the database manager to connect clinical and laboratory information during a query. The queried data can then be exported for statistical analysis and hypothesis generation.
Journal of Carcinogenesis | 2009
Leonardo Faoro; Gustavo M. Cervantes; Benjamin D. Ferguson; Tanguy Y. Seiwert; Soheil Yala; Wicki T. Vigneswaran; Maria Westerhoff; Maria Tretiakova; Mark K. Ferguson; Glaci L. Moura; Aliya N. Husain; Everett E. Vokes; Ravi Salgia
Background: Treatment of non-small cell lung cancer (NSCLC) remains a difficult task in oncology. Targeted inhibition of oncogenic proteins is promising. In this study, we evaluate the expression of MET and PKCß and in vitro effects of their inhibition using SU11274 and enzastaurin (LY317615.HCl) respectively. Materials and Methods: Patient samples were analyzed by immunohistochemistry for expression of PKCß and MET, utilizing tissue microarrays under an IRB-approved protocol. Expression of PKCß and MET was evaluated in cell lines by immunoblotting. Treatment with SU1174 against MET and enzastaurin against PKCß was performed in H1993 and H358 cell lines, and cell proliferation and downstream signaling (phosphorylation of MET, AKT, FAK, and GSK3ß) were evaluated by immunoblotting. Statistical analysis was performed using SPSS 16.0. Results: Expression of MET positively correlated with lymph node metastases (p=.0004), whereas PKCß showed no correlation (p=0.204). MET and PKCß expression were also strongly correlated (p<0.001). Expression of MET was observed in 5/8 cell lines (H358, H1703, A549, H1993, H2170; absent from H522, H661, or SW1573), whereas PKCß expression was observed in 8/8 cell lines. Cell proliferation was significantly impaired by treatment with SU11274 and enzastaurin, and their effects were synergistic in combination (CI=0.32 and 0.09). Phosphorylation of MET, FAK, AKT, and GSK3ß were strongly inhibited with both agents in combination. Conclusions: Concomitant inhibition of MET and PKCß significantly increased cytotoxicity in vitro against NSCLC, disrupting important downstream signaling pathways. Further evaluation in animal models is warranted.
Archive | 2017
Benjamin D. Ferguson; Jeffrey B. Matthews
Management of pancreatic pseudocyst requires multidisciplinary planning and nuanced clinical judgment. While open surgical management has long been the mainstay of therapy, laparoscopic and endoscopic approaches have been increasingly adopted in routine practice. Few data from randomized controlled trials exist to compare laparoscopic and endoscopic techniques. Most experienced practitioners agree that the least invasive approach possible is generally preferable, although ultimately management decisions must be individualized for each patient based on specific clinical and anatomic circumstances. Specifically, the location of the pseudocyst in relation to enteral structures that are easily reached by endoscope is critical in determining whether endoscopic drainage is appropriate. To illustrate the complex management decisions and technical aspects, we present and discuss three cases of pancreatic pseudocyst managed by endoscopic, laparoscopic, and open surgical techniques.
Archive | 2016
Benjamin D. Ferguson; Jeffrey B. Matthews
There is currently debate as to whether splenic preservation should be attempted during distal pancreatectomy, as splenectomy brings with it the risk of overwhelming post-splenectomy sepsis as well as hematologic aberrations such as thrombocytosis and leukocytosis. Little clarity has been established in understanding the differential benefits and disadvantages of spleen preservation at distal pancreatectomy as compared to those of splenectomy. After review, there are few differences between the two techniques regarding outcomes and postoperative complications. Splenic preservation should be attempted when it is technically feasible and not otherwise contraindicated.