Bernard Tivoli

Screening techniques and sources of resistance to foliar diseases caused by major necrotrophic fungi in grain legumes

SummaryNecrotrophic pathogens of the cool season food legumes (pea, lentil, chickpea, faba bean and lupin) cause wide spread disease and severe crop losses throughout the world. Environmental conditions play an important role in the development and spread of these diseases. Form of inoculum, inoculum concentration and physiological plant growth stage all affect the degree of infection and the amount of crop loss. Measures to control these diseases have relied on identification of resistant germplasm and development of resistant varieties through screening in the field and in controlled environments. Procedures for screening and scoring germplasm and breeding lines for resistance have lacked uniformity among the various programs worldwide. However, this review highlights the most consistent screening and scoring procedures that are simple to use and provide reliable results. Sources of resistance to the major necrotrophic fungi are summarized for each of the cool season food legumes. Marker-assisted selection is underway for Ascochyta blight of pea, lentil and chickpea, and Phomopsis blight of lupin. Other measures such as fungicidal control and cultural control are also reviewed. The emerging genomic information on the model legume, Medicago truncatula, which has various degrees of genetic synteny with the cool season food legumes, has promise for identification of closely linked markers for resistance genes and possibly for eventual map-based cloning of resistance genes. Durable resistance to the necrotrophic pathogens is a common goal of cool season food legume breeders.

Role of seed infection by the Ascochyta blight pathogen of dried pea (Mycosphaerella pinodes) in seedling emergence, early disease development and transmission of the disease to aerial plant parts

The role of infected seed in the epidemiology of Ascochyta blight of pea, caused by Mycosphaerella pinodes, was studied both under growth chamber and field conditions, using healthy seeds, naturally infected seeds and artificially infected seeds. Results suggest that infected seeds caused serious losses, as a result of poor germination and high transmission of the disease, to parts of the plants under soil level. Foot rot symptoms often caused the death of young seedlings. Losses were increased by low temperatures during the early stage of crop development. M. pinodes progressed from seeds to aerial parts of the plants, but no Ascochyta blight symptoms occurred, the disease remaining near to the basal parts of the plants as a foot rot symptom. This suggests that seeds cannot be regarded as a source of contamination in the epidemiology of the disease.

Evaluation of a collection of faba bean (Vicia faba L.) genotypes originating from the Maghreb for resistance to chocolate spot (Botrytis fabae) by assessment in the field and laboratory

Screening of 136 faba bean lines forresistance to chocolate spot caused by thefungus Botrytis fabae was conductedin field conditions with artificialinoculation. Detached leaves of thesegenotypes were also assessed for diseaseseverity after inoculation under controlledconditions with a B. fabaesuspension. The BPL710 and Aguadulcegenotypes were inserted as resistant andsusceptible checks, respectively. Diseasesymptoms were scored visually in bothexperiments. Diameter of lesions andproduction of spores were measured in thedetached leaf assay. The disease scoreindex and diameter of lesions were used tocalculate the area under the diseaseprogress curve (AUDPC) to measure thedisease progress. Significant differenceswere detected among genotypes for reactionto the disease in the field. However, nocomplete resistance was observed. Forhighly susceptible and highly resistantgenotypes, the laboratory assay generallyled to the same result as the field test,nevertheless, for more intermediate levelsthe agreement was weak. On detached leaves,diameter of lesions was significantlycorrelated to the AUDPC of disease scores(r = 0.89) and moderately correlated tosporulation (r = 0.52). The correlationbetween field AUDPC and detached leaf AUDPCof disease scores was low (r = 0.26). A lowcorrelation was also observed between fieldAUDPC and lesion size (r = 0.30) andbetween field AUDPC and sporulation (r =0.32). Among the 136 genotypes evaluated inthis study, nine were convincingly andhighly resistant in both tests. FRYM167 andFRYA58 genotypes were the most resistantwith low AUDPC of disease scores, low AUDPCof lesion diameter and low sporeproduction. These genotypes obviously havepartial resistance.

Impacts of plant growth and architecture on pathogen processes and their consequences for epidemic behaviour

As any epidemic on plants is driven by the amount of susceptible tissue, and the distance between organs, any modification in the host population, whether quantitative or qualitative, can have an impact on the epidemic dynamics. In this paper we examine using examples described in the literature, the features of the host plant and the use of crop management which are likely to decrease diseases. We list the pathogen processes that can be affected by crop growth and architecture modifications and then determine how we can highlight the principal ones. In most cases, a reduction in plant growth combined with an increase in plant or crop porosity reduces infection efficiency and spore dispersal. Experimental approaches in semi-controlled conditions, with concomitant characterisation of the host, microclimate and disease, allow a better understanding and analysis of the processes impacted. Afterwards, the models able to measure and predict the effect of plant growth and architecture on epidemic behaviour are reviewed.

Host status and reaction of Medicago truncatula accessions to infection by three major pathogens of pea (Pisum sativum) and alfalfa (Medicago sativa)

Ditylenchus dipsaci, the stem nematode of alfalfa (Medicago sativa), Mycosphaerella pinodes, cause of Ascochyta blight in pea (Pisum sativum) and Aphanomyces euteiches, cause of pea root rot, result in major yield losses in French alfalfa and pea crops. These diseases are difficult to control and the partial resistances currently available are not effective enough. Medicago truncatula, the barrel medic, is the legume model for genetic studies, which should lead to the identification and characterization of new resistance genes for pathogens. We evaluated a collection of 34 accessions of M. truncatula and nine accessions from three other species (two from M. italica, six from M. littoralis and one from M. polymorpha) for resistance to these three major diseases. We developed screening tests, including standard host references, for each pathogen. Most of the accessions tested were resistant to D. dipsaci, with only three accessions classified as susceptible. A very high level of resistance to M. pinodes was observed among the accessions, none of which was susceptible to this pathogen. Conversely, a high level of variation, from resistant to susceptible accessions, was identified in response to infection by A. euteiches.

Current knowledge on plant/canopy architectural traits that reduce the expression and development of epidemics

To reduce the use of pesticides, innovative studies have been developed to introduce the plant as the centre of the crop protection system. The aim of this paper is to explain how architectural traits of plants and canopies induce a more or less severe epidemic and how they may be modified in order to reduce disease development. In particular, it focuses on three key questions: i) which processes linked to epidemics can be influenced by architecture ii) how can architecture be characterized relative to these modes of action, and iii) how can these effects be explored and exploited? The roles of plant/canopy architecture on inoculum interception, on epidemic development via the microclimate and on tissue receptivity are discussed. In addition, the concepts of disease avoidance, canopy porosity and an ideotype unfavourable for disease development are described. This paper shows that many advances have already been made, but progress is still required in four main fields: microclimatology, mathematical modelling of plants, molecular genetics and ideotype conception.

Improvement and validation of a pea crop growth model to simulate the growth of cultivars infected with Ascochyta blight (Mycosphaerella pinodes)

A model simulating the growth of a pea crop infected with Ascochyta blight was improved and validated using 6 spring pea cultivars, all equally susceptible to Ascochyta blight, but differing in architectural features (stem height, branching ability, standing ability). This model takes into account the spatial distribution of the disease, including the contribution of each layer of the canopy to the radiation interception efficiency (RIE) and the radiation use efficiency (RUE) of the crop. The decreasing contribution of each layer due to the disease was estimated by the relationship between the photosynthesis of a layer and its disease score. The effect of disease on photosynthesis was assessed in controlled conditions as a means of evaluating the effect of disease on each cultivar. All cultivars were affected equally. In field conditions, cultivars with different canopy architectures displayed differences in the profile of disease on leaves. Cultivar Aladin reached higher disease levels at the top of the plant. Epidemics affected crop growth, and the cultivars tested differed in the magnitude of the decrease in growth. Observed and simulated data were compared. The disease-coupled crop growth model gave satisfactory predictions of crop growth for the six cultivars tested.

Defining and designing plant architectural ideotypes to control epidemics

Ideotypes are a popular concept for plant breeders, who designate as such the ideal combinations of traits in a particular genotype to reach a pre-set production objective within a given socio-economic context. The historical, ‘genetic’ view of ideotypes has been more recently extended to cover the design of plant genotypes for specific cropping systems (the ‘agronomic’ view), or even the ideal combination of parameters, identified from formal or simulation modeling, to a specific agronomic problem (the ‘modelling’ view). These different forms of ideotypes in turn lead to different strategies for breeding plants. This paper will briefly describe, analyse and discuss some applications of these ideotype views, using the specific case of architectural traits of plant and crop canopies to limit the epidemic development of pests and diseases in crops. It is not intended to be an exhaustive and objective review of the existing literature on plant ideotypes, but rather to express as an ‘opinion’ paper the views discussed and elaborated among participants to the EpiArch network.

Effect and underlying mechanisms of pea-cereal intercropping on the epidemic development of ascochyta blight

Field experiments were conducted in western France for two consecutive years to investigate the effect of pea-cereal intercropping on ascochyta blight, a major constraint of field pea production world-wide. Disease pressure was variable in the experiments. Intercropping had almost no effect on disease development on stipules regardless of disease pressure. In contrast, disease severity on pods and stems was substantially reduced in the pea-cereal intercrop compared to the pea monocrop when the epidemic was moderate to severe. Therefore, a pea-cereal intercrop could potentially limit direct yield loss and reduce the quantity of primary inoculum available for subsequent pea crops. Disease reduction was partially explained by a modification of the microclimate within the intercrop canopy, in particular, a reduction in leaf wetness duration during and after flowering. The effect of intercropping on splash dispersal of conidia was investigated under controlled conditions using a rainfall simulator. Total dispersal was reduced by 39 to 78% in pea-wheat canopies compared to pea canopies. These reductions were explained by a reduction in host plant density and a barrier or relay effect of the non-host plants.

Controlled environment assessment of partial resistance to Mycosphaerella pinodes in pea (Pisum sativum L.) seedlings

We evaluated the effect of various genotypes of pea (Pisum sativum L.) to delay the development of ascochyta blight, caused by the fungus Mycosphaerella pinodes, at the seedling stage under controlled conditions. We assessed leaflets, stipules and stems, separately. We compared genotypes on the basis of four variables assessing resistance: incubation period (IP), appearance of disease scoring 3 (DS3), disease progress rate (rd) and area under the disease progress curve (AUDPC).For leaves, a continuous variation was observed between pea lines in disease severity at all times and disease progress curves were similar for the various genotypes. Partial resistance was defined as a delay in first symptom appearance and disease development. Resistance factors are thought to be involved in the very early stages of the interaction. Similar results were obtained for stipules and leaflets, suggesting similar mechanisms of resistance in these two organs. Stem and leaf resistances were also strongly correlated. We found that IP could discriminate genotypes but that factors associated with disease progress (DS3, AUDPC and rd) were more informative. We suggest that further genetic analyses should be based on growth-chamber methods, with AUDPC as the variable measured.