Bijay Pattnaik
Institute of Genomics and Integrative Biology
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Publication
Featured researches published by Bijay Pattnaik.
The EMBO Journal | 2014
Tanveer Ahmad; Shravani Mukherjee; Bijay Pattnaik; Manish Kumar; Suchita Singh; Rakhshinda Rehman; Brijendra K. Tiwari; Kumar Abhiram Jha; Amruta P. Barhanpurkar; Mohan R. Wani; Soumya S Roy; Ulaganathan Mabalirajan; Balaram Ghosh; Anurag Agrawal
There is emerging evidence that stem cells can rejuvenate damaged cells by mitochondrial transfer. Earlier studies show that epithelial mitochondrial dysfunction is critical in asthma pathogenesis. Here we show for the first time that Miro1, a mitochondrial Rho‐GTPase, regulates intercellular mitochondrial movement from mesenchymal stem cells (MSC) to epithelial cells (EC). We demonstrate that overexpression of Miro1 in MSC (MSCmiroHi) leads to enhanced mitochondrial transfer and rescue of epithelial injury, while Miro1 knockdown (MSCmiroLo) leads to loss of efficacy. Treatment with MSCmiroHi was associated with greater therapeutic efficacy, when compared to control MSC, in mouse models of rotenone (Rot) induced airway injury and allergic airway inflammation (AAI). Notably, airway hyperresponsiveness and remodeling were reversed by MSCmiroHi in three separate allergen‐induced asthma models. In a human in vitro system, MSCmiroHi reversed mitochondrial dysfunction in bronchial epithelial cells treated with pro‐inflammatory supernatant of IL‐13‐induced macrophages. Anti‐inflammatory MSC products like NO, TGF‐β, IL‐10 and PGE2, were unchanged by Miro1 overexpression, excluding non‐specific paracrine effects. In summary, Miro1 overexpression leads to increased stem cell repair.
Cell Death and Disease | 2013
Tanveer Ahmad; Kunal Aggarwal; Bijay Pattnaik; Tavpritesh Sethi; Brijendra K. Tiwari; M. Kumar; A Micheal; Ulaganathan Mabalirajan; B Ghosh; S Sinha Roy; Abhinav Agrawal
Dynamic variations in mitochondrial shape have been related to function. However, tools to automatically classify and enumerate mitochondrial shapes are lacking, as are systematic studies exploring the relationship of such shapes to mitochondrial stress. Here we show that during increased generation of mitochondrial reactive oxygen species (mtROS), mitochondria change their shape from tubular to donut or blob forms, which can be computationally quantified. Imaging of cells treated with rotenone or antimycin, showed time and dose-dependent conversion of tubular forms to donut-shaped mitochondria followed by appearance of blob forms. Time-lapse images showed reversible transitions from tubular to donut shapes and unidirectional transitions between donut and blob shapes. Blobs were the predominant sources of mtROS and appeared to be related to mitochondrial-calcium influx. Mitochondrial shape change could be prevented by either pretreatment with antioxidants like N-acetyl cysteine or inhibition of the mitochondrial calcium uniporter. This work represents a novel approach towards relating mitochondrial shape to function, through integration of cellular markers and a novel shape classification algorithm.
American Journal of Respiratory Cell and Molecular Biology | 2014
S.C. Das; Manish Kumar; Vinny Negi; Bijay Pattnaik; Y. S. Prakash; Anurag Agrawal; Balaram Ghosh
Idiopathic pulmonary fibrosis (IPF) is a fatal disorder resulting from the progressive remodeling of lungs, with no known effective treatment. Although transforming growth factor (TGF)-β has a well-established role in lung fibrosis, clinical experience with neutralizing antibodies to TGF-β has been disappointing, and strategies to directly suppress TGF-β1 secretion are needed. In this study we used a combination of in silico, in vitro, and in vivo approaches to identify microRNAs involved in TGF-β1 regulation and to validate the role of miR-326 in pulmonary fibrosis.We show that hsa-miR-326 regulates TGF-β1 expression and that hsa-miR-326 levels are inversely correlated to TGF-β1 protein levels in multiple human cell lines. The increase in TGF-β1 expression during the progression of bleomycin-induced lung fibrosis in mice was associated with loss of mmu-miR-326. Restoration of mmu-miR-326 levels by intranasal delivery of miR-326 mimics was sufficient to inhibit TGF-β1 expression and attenuate the fibrotic response. Moreover, human IPF lung specimens had markedly diminished miR-326 expression as compared with nonfibrotic lungs. Additional targets of miR-326 controlling TGF-β signaling and fibrosis-related pathways were identified, and miR-326 was found to down-regulate profibrotic genes, such as Ets1, Smad3, and matrix metalloproteinase 9, whereas it up-regulates antifibrotic genes, such as Smad7. Our results suggest for the first time that miR-326 plays a key role in regulating TGF-β1 expression and other profibrotic genes and could be useful in developing better therapeutic strategies for alleviating lung fibrosis.
eLife | 2017
Lan-Feng Dong; Jaromira Kovarova; Martina Bajzikova; Ayenachew Bezawork-Geleta; David Svec; Berwini Endaya; Karishma Sachaphibulkij; Ana Coelho; Natasa Sebkova; Anna Ruzickova; An S. Tan; Katarina Kluckova; Kristyna Judasova; Katerina Zamecnikova; Zuzana Rychtarcikova; Vinod Gopalan; Ladislav Andera; Margarita Sobol; Bing Yan; Bijay Pattnaik; Naveen K. Bhatraju; Jaroslav Truksa; Pavel Stopka; Pavel Hozák; Alfred King-Yin Lam; Radislav Sedlacek; Paulo J. Oliveira; Mikael Kubista; Anurag Agrawal; Katerina Dvorakova-Hortova
Recently, we showed that generation of tumours in syngeneic mice by cells devoid of mitochondrial (mt) DNA (ρ0 cells) is linked to the acquisition of the host mtDNA. However, the mechanism of mtDNA movement between cells remains unresolved. To determine whether the transfer of mtDNA involves whole mitochondria, we injected B16ρ0 mouse melanoma cells into syngeneic C57BL/6Nsu9-DsRed2 mice that express red fluorescent protein in their mitochondria. We document that mtDNA is acquired by transfer of whole mitochondria from the host animal, leading to normalisation of mitochondrial respiration. Additionally, knockdown of key mitochondrial complex I (NDUFV1) and complex II (SDHC) subunits by shRNA in B16ρ0 cells abolished or significantly retarded their ability to form tumours. Collectively, these results show that intact mitochondria with their mtDNA payload are transferred in the developing tumour, and provide functional evidence for an essential role of oxidative phosphorylation in cancer. DOI: http://dx.doi.org/10.7554/eLife.22187.001
American Journal of Respiratory Cell and Molecular Biology | 2012
Tanveer Ahmad; Manish Kumar; Ulaganathan Mabalirajan; Bijay Pattnaik; Shilpi Aggarwal; Ranjana Singh; Suchita Singh; Mitali Mukerji; Balaram Ghosh; Anurag A. Agrawal
Oxygen-sensing prolyl-hydroxylase (PHD)-2 negatively regulates hypoxia-inducible factor (HIF)1-α and suppresses the hypoxic response. Hypoxia signaling is thought to be proinflammatory but also attenuates cellular injury and apoptosis. Although increased hypoxic response has been noted in asthma, its functional relevance is unknown. The objectives of this study were to dissect the mechanisms and role of the hypoxic response in asthma pathophysiology. Experimental studies were conducted in mice using acute and chronic allergic models of asthma. The hypoxic response in allergically inflamed lungs was modulated by using pharmacologic PHD inhibitors (ethyl-3-4-dihydroxybenzoic acid [DHB], 1-10 mg/kg) or siRNA-mediated genetic knockdowns. Increased hypoxia response led to exacerbation of the asthma phenotype, with HIF-1α knockdown being beneficial. Chronically inflamed lungs from mice treated with 10 mg/kg DHB showed diffuse up-regulation of the hypoxia response, severe airway remodeling, and inflammation. Fatal asphyxiation during methacholine challenge was noted. However, bronchial epithelium restricted up-regulation of the hypoxia response seen with low-dose DHB (1 mg/kg) reduced epithelial injury and attenuated the asthmatic phenotype. Up-regulation of the hypoxia response was associated with increased expression of CX3CR1, a lymphocyte survival factor, and increased inflammatory cell infiltrate. This study shows that an exaggerated hypoxia response may contribute to airway inflammation, remodeling, and the development of asthma. However, the hypoxia response may also be protective of epithelial apoptosis at lower levels, and the net effects of modulating the hypoxia response may vary based on the context.
American Journal of Physiology-lung Cellular and Molecular Physiology | 2016
Suchita Singh; Manish Bodas; Naveen K. Bhatraju; Bijay Pattnaik; Atish Gheware; Praveen Kolumam Parameswaran; Michael A. Thompson; Michelle Freeman; Ulaganathan Mabalirajan; Reinoud Gosens; Balaram Ghosh; Christina M. Pabelick; Allan Linneberg; Y. S. Prakash; Anurag Agrawal
There is limited knowledge regarding the consequences of hyperinsulinemia on the lung. Given the increasing prevalence of obesity, insulin resistance, and epidemiological associations with asthma, this is a critical lacuna, more so with inhaled insulin on the horizon. Here, we demonstrate that insulin can adversely affect respiratory health. Insulin treatment (1 μg/ml) significantly (P < 0.05) increased the proliferation of primary human airway smooth muscle (ASM) cells and induced collagen release. Additionally, ASM cells showed a significant increase in calcium response and mitochondrial respiration upon insulin exposure. Mice administered intranasal insulin showed increased collagen deposition in the lungs as well as a significant increase in airway hyperresponsiveness. PI3K/Akt mediated activation of β-catenin, a positive regulator of epithelial-mesenchymal transition and fibrosis, was observed in the lungs of insulin-treated mice and lung cells. Our data suggests that hyperinsulinemia may have adverse effects on airway structure and function. Insulin-induced activation of β-catenin in lung tissue and the contractile effects on ASM cells may be causally related to the development of asthma-like phenotype.
Journal of Controlled Release | 2016
Manika Vij; Poornemaa Natarajan; Bijay Pattnaik; Shamshad Alam; Nidhi Gupta; Deenan Santhiya; Rajpal Sharma; Archana Singh; Kausar M. Ansari; Rajesh S. Gokhale; Vivek T. Natarajan; Munia Ganguli
Topical delivery to skin is an essential step in non-invasive application of nucleic acid therapeutics for cutaneous disorders. The barrier posed by different layers of the skin - stratum corneum on top followed by the viable epidermis below - makes it extremely challenging for large hydrophilic molecules like nucleic acids to efficiently enter the uncompromised skin. We report an amphipathic peptide Mgpe9 (CRRLRHLRHHYRRRWHRFRC) that can penetrate the uncompromised skin, enter skin cells and deliver plasmid DNA efficiently as nanocomplexes in vitro and in vivo without any additional physical or chemical interventions prevalent currently. We observe efficient gene expression up to the highly proliferating basal layer of the skin without observable adverse reactions or toxic effects after delivery of reporter plasmids. The entry mechanism of nanocomplexes possibly involves reversible modulation of junction proteins accompanied by transient changes in skin structure. This peptide holds potential to be used as an efficient transporter of therapeutic nucleic acids to the skin.
American Journal of Physiology-lung Cellular and Molecular Physiology | 2016
Suchita Singh; Manish Bodas; Naveen K. Bhatraju; Bijay Pattnaik; Atish Gheware; Praveen Kolumam Parameswaran; Michael A. Thompson; Michelle Freeman; Ulaganathan Mabalirajan; Reinoud Gosens; Balaram Ghosh; Christina M. Pabelick; Allan Linneberg; Y. S. Prakash; Anurag Agrawal
to the editor: We appreciate the interest shown by Wolff et al. ([17][1]) regarding our recent publication in the American Journal of Physiology Lung Cellular and Molecular Physiology ([11][2]). We acknowledge the convenience of an inhaled insulin formulation, the extensive safety data required by
Molecular Therapy | 2015
Manika Vij; Poornemaa Natarajan; Bijay Pattnaik; Shamshad Alam; Nidhi Gupta; Deenan Santhiya; Rajpal Sharma; Archana Singh; Kausar M. Ansari; Rajesh S. Gokhale; Vivek T. Natarajan; Munia Ganguli
Skin is a dynamic organ known for its protective functions. With a wide range of associated deblitating and untreatable conditions it has been explored for topical delivery of therapeutics for sustainable effects. In spite of the obvious advantages of the organ delivery of various hydrophilic molecules to skin has met with limited success. This could be attributed to the unique lipid composition and compact organization of stratum corneum which impedes the entry of such molecules in skin limiting their potential clinical translations. Recent approaches involve use of minimal invasive methods for macromolecules delivery to skin. However, issues with efficiency, toxicity, robustness and high costs limit their universal use. Thus one of the key challenges in skin biology is to develop noninvasive, non-toxic and efficient methods for delivery of biomolecules to and through the skin. We have developed a peptide-based delivery system for efficient nucleic acid delivery in skin upon topical application as nanocomplexes. Further we have tried to improvise the delivery efficiency using safe enhancers and modified the carrier to attain specific targeting in skin. The peptide is secondary amphipathic in nature that tends to acquire alpha-helical structure in hydrophobic environment and retains in skin till 24hrs as seen through Franz assay. We have also found that upon topical application of peptide either in bare form or as nanocomplex to skin cells or human foreskin tissue it exhibits efficient cellular entry, high transfection efficiency as well as skin penetration ability as assessed by fluorescence and luciferase based assays. Transfection efficiency observed was equivalent to that obtained with commercial agents. In-vivo studies using SKH-1 hairless mice model showed similar activity. To realize the clinical potential of the work we have shown delivery of therapeutically relevant nucleic acids in skin with effective and traceable amounts of therapeutic molecules. The cytotoxicity and dye penetration test analysis of bare peptide and nanocomplex revealed no deleterious effect on skin cells as well as tissue. Mechanistic insights revealed that the entry of the peptide in skin is mediated partially by fluidization of lipids in addition to transient disruption of junctional proteins as seen through FTIR and time lapse studies. To further enhance the transfection efficiency of these nanocomplexes in skin without compromising its integrity, pre-application of silicone oil worked as an effective strategy. We further modified the peptide with a keratinocyte specific ligand and observed high transfection efficiency in selective cellular population. Presently we are validating the same in skin tissue. Overall we describe development of a convenient, clinically effective and possibly patient compliant approach to facilitate delivery of macromolecular therapeutics in skin.
The Journal of Allergy and Clinical Immunology | 2016
Bijay Pattnaik; Manish Bodas; Naveen K. Bhatraju; Tanveer Ahmad; Richa Pant; Randeep Guleria; Balaram Ghosh; Anurag Agrawal