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Featured researches published by Bob Paton.


Current Biology | 2015

Binary Switching of Calendar Cells in the Pituitary Defines the Phase of the Circannual Cycle in Mammals.

Shona H. Wood; Helen Christian; Katarzyna Miedzinska; Ben Saer; Mark Johnson; Bob Paton; Le Yu; Judith McNeilly; Julian R. E. Davis; Alan S. McNeilly; David W. Burt; Andrew Loudon

Summary Persistent free-running circannual (approximately year-long) rhythms have evolved in animals to regulate hormone cycles, drive metabolic rhythms (including hibernation), and time annual reproduction. Recent studies have defined the photoperiodic input to this rhythm, wherein melatonin acts on thyrotroph cells of the pituitary pars tuberalis (PT), leading to seasonal changes in the control of thyroid hormone metabolism in the hypothalamus. However, seasonal rhythms persist in constant conditions in many species in the absence of a changing photoperiod signal, leading to the generation of circannual cycles. It is not known which cells, tissues, and pathways generate these remarkable long-term rhythmic processes. We show that individual PT thyrotrophs can be in one of two binary states reflecting either a long (EYA3+) or short (CHGA+) photoperiod, with the relative proportion in each state defining the phase of the circannual cycle. We also show that a morphogenic cycle driven by the PT leads to extensive re-modeling of the PT and hypothalamus over the circannual cycle. We propose that the PT may employ a recapitulated developmental pathway to drive changes in morphology of tissues and cells. Our data are consistent with the hypothesis that the circannual timer may reside within the PT thyrotroph and is encoded by a binary switch timing mechanism, which may regulate the generation of circannual neuroendocrine rhythms, leading to dynamic re-modeling of the hypothalamic interface. In summary, the PT-ventral hypothalamus now appears to be a prime structure involved in long-term rhythm generation.


Mechanisms of Development | 2010

Identification of genes downstream of the Shh signalling in the developing chick wing and syn-expressed with Hoxd13 using microarray and 3D computational analysis

Fiona Bangs; Monique Welten; Megan Davey; Malcolm Fisher; Yili Yin; Helen Downie; Bob Paton; Richard Baldock; David W. Burt; Cheryll Tickle

Sonic hedgehog (Shh) signalling by the polarizing region at the posterior margin of the chick wing bud is pivotal in patterning the digits but apart from a few key downstream genes, such as Hoxd13, which is expressed in the posterior region of the wing that gives rise to the digits, the genes that mediate the response to Shh signalling are not known. To find genes that are co-expressed with Hoxd13 in the posterior of chick wing buds and regulated in the same way, we used microarrays to compare gene expression between anterior and posterior thirds of wing buds from normal chick embryos and from polydactylous talpid³ mutant chick embryos, which have defective Shh signalling due to lack of primary cilia. We identified 1070 differentially expressed gene transcripts, which were then clustered. Two clusters contained genes predominantly expressed in posterior thirds of normal wing buds; in one cluster, genes including Hoxd13, were expressed at high levels in anterior and posterior thirds in talpid³ wing buds, in the other cluster, genes including Ptc1, were expressed at low levels in anterior and posterior thirds in talpid³ wing buds. Expression patterns of genes in these two clusters were validated in normal and talpid³ mutant wing buds by in situ hybridisation and demonstrated to be responsive to application of Shh. Expression of several genes in the Hoxd13 cluster was also shown to be responsive to manipulation of protein kinase A (PKA) activity, thus demonstrating regulation by Gli repression. Genes in the Hoxd13 cluster were then sub-clustered by computational comparison of 3D expression patterns in normal wing buds to produce syn-expression groups. Hoxd13 and Sall1 are syn-expressed in the posterior region of early chick wing buds together with 6 novel genes which are likely to be functionally related and represent secondary targets of Shh signalling. Other groups of syn-expressed genes were also identified, including a group of genes involved in vascularisation.


Mechanisms of Development | 2009

13-P057 Allelic imbalance of Shh expression and polydactyly are linked to a SNP in the ZRS region of Lmbr1 in Silkie chickens

Megan Davey; Bob Paton; Allyson K. Clelland; Cheryll Tickle; Dave Burt; Ian F. Dunn

In the mouse, however, it has been demonstrated that the two most posterior of the five digits are derived entirely from the polarizing region by proliferation without the requirement of Shh diffusion. To understand the contribution and significance that polarizing region cell proliferation has in forming different digit patterns, we grafted polarizing regions from a transgenic chicken line stably expressing Green Fluorescent Protein (GFP) into normal wing buds (three digits), or leg buds (four digits). We will describe how these fate-maps behave when either Shh signalling is dampened, or proliferation is inhibited. We will present a model outlining our findings, highlighting the evolutionary implications.


BMC Genomics | 2015

Detection and characterization of small insertion and deletion genetic variants in modern layer chicken genomes

Clarissa Boschiero; Almas Gheyas; Hannah Ralph; Lel Eory; Bob Paton; Richard Kuo; Janet E. Fulton; Rudolf Preisinger; Peter K. Kaiser; David W. Burt


Archive | 2010

Avian colony stimulating factor 1 receptor binding proteins

David A. Hume; Dave Burt; David P. Sester; Valerie Garceau; Jacqueline Smith; Bob Paton


British Poultry Science | 1998

Genetic mapping of the chicken prolactin receptor gene

Ian F. Dunn; G McEwan; T Okhubo; Peter J. Sharp; Bob Paton; Dave Burt


Archive | 2014

Identification of molecular circuits involved in epigenetic re-modelling in the ovine pars tuberalis using next generation sequencing data

Le Yu; Shona H. Wood; Katarzyna Miedzinska; Bob Paton; Alan S. McNeilly; Andrew Loudon; Dave Burt


XIII Congress of the EBRS [European Biological Rhythms Society] | 2013

Activation of Novel Molecular Circuits involved in Epigenetic Re-modelling in the Ovine Pars Tuberalis in Response to Long Photoperiods Revealed by RNA-seq

Le Yu; Shona H. Wood; Katarzyna Miedzinska; Bob Paton; Sandrine M. Dupre; Alan S. McNeilly; Julian R. E. Davis; Andrew Loudon; Dave Burt


Archive | 2013

Bioinformatics Analysis to identify Molecular Circuits involved in Epigenetic Re-modelling in the Ovine Pars Tuberalis using Next Generation Sequencing data

Le Yu; Shona H. Wood; Katarzyna Miedzinska; Bob Paton; Sandrine M. Dupre; Alan S. McNeilly; Julian R. E. Davis; Andrew Loudon; Dave Burt


NARF Opening Meeting | 2013

A comparison of immune responses to avian influenza infection in ducks and chickens: a focus on the interferon-induced transmembrane (IFITM) proteins

Jacqueline Smith; Le Yu; Bob Paton; Maria Gutowska; Robert G. Webster; Dave Burt

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Dave Burt

University of Edinburgh

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Le Yu

University of Edinburgh

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Andrew Loudon

University of Manchester

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