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Dive into the research topics where Bonnie Ullmann is active.

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Featured researches published by Bonnie Ullmann.


Development | 2003

Endothelin 1-mediated regulation of pharyngeal bone development in zebrafish

Charles B. Kimmel; Bonnie Ullmann; Macie B. Walker; Craig T. Miller; Justin Gage Crump

Endothelin 1 (Edn1), a secreted peptide expressed ventrally in the primordia of the zebrafish pharyngeal arches, is required for correct patterning of pharyngeal cartilage development. We have studied mutants and morpholino-injected larvae to examine the role of the Edn1 signal in patterning anterior pharyngeal arch bone development during the first week after fertilization. We observe a remarkable variety of phenotypic changes in dermal bones of the anterior arches after Edn1 reduction, including loss, size reduction and expansion, fusion and shape change. Notably, the changes that occur appear to relate to the level of residual Edn1. Mandibular arch dermal bone fusions occur with severe Edn1 loss. In the dorsal hyoid arch, the dermal opercle bone is usually absent when Edn1 is severely reduced and is usually enlarged when Edn1 is only mildly reduced, suggesting that the same signal can act both positively and negatively in controlling development of a single bone. Position also appears to influence the changes: a branchiostegal ray, a dermal hyoid bone normally ventral to the opercle, can be missing in the same arch where the opercle is enlarged. We propose that Edn1 acts as a morphogen; different levels pattern specific positions, shapes and sizes of bones along the dorso-ventral axis. Changes involving Edn1 may have occurred during actinopterygian evolution to produce the efficient gill-pumping opercular apparatus of teleosts.


PLOS ONE | 2010

Modes of developmental outgrowth and shaping of a craniofacial bone in zebrafish.

Charles B. Kimmel; April DeLaurier; Bonnie Ullmann; John Dowd; Marcie McFadden

The morphologies of individual bones are crucial for their functions within the skeleton, and vary markedly during evolution. Recent studies have begun to reveal the detailed molecular genetic pathways that underlie skeletal morphogenesis. On the other hand, understanding of the process of morphogenesis itself has not kept pace with the molecular work. We examined, through an extended period of development in zebrafish, how a prominent craniofacial bone, the opercle (Op), attains its adult morphology. Using high-resolution confocal imaging of the vitally stained Op in live larvae, we show that the bone initially appears as a simple linear spicule, or spur, with a characteristic position and orientation, and lined by osteoblasts that we visualize by transgenic labeling. The Op then undergoes a stereotyped sequence of shape transitions, most notably during the larval period occurring through three weeks postfertilization. New shapes arise, and the bone grows in size, as a consequence of anisotropic addition of new mineralized bone matrix along specific regions of the pre-existing bone surfaces. We find that two modes of matrix addition, spurs and veils, are primarily associated with change in shape, whereas a third mode, incremental banding, largely accounts for growth in size. Furthermore, morphometric analyses show that shape development and growth follow different trajectories, suggesting separate control of bone shape and size. New osteoblast arrangements are associated with new patterns of matrix outgrowth, and we propose that fine developmental regulation of osteoblast position is a critical determinant of the spatiotemporal pattern of morphogenesis.


Genesis | 2010

Zebrafish sp7:EGFP: A transgenic for studying otic vesicle formation, skeletogenesis, and bone regeneration

April DeLaurier; B. Frank Eames; Bernardo Blanco-Sánchez; Gang Peng; Xinjun He; Mary E. Swartz; Bonnie Ullmann; Monte Westerfield; Charles B. Kimmel

We report the expression pattern and construction of a transgenic zebrafish line for a transcription factor involved in otic vesicle formation and skeletogenesis. The zinc finger transcription factor sp7 (formerly called osterix) is reported as a marker of osteoblasts. Using bacterial artificial chromosome (BAC)‐mediated transgenesis, we generated a zebrafish transgenic line for studying skeletal development, Tg(sp7:EGFP)b1212. Using a zebrafish BAC, EGFP was introduced downstream of the regulatory regions of sp7 and injected into one cell‐stage embryos. In this transgenic line, GFP expression reproduces endogenous sp7 gene expression in the otic placode and vesicle, and in forming skeletal structures. GFP‐positive cells were also detected in adult fish, and were found associated with regenerating fin rays postamputation. This line provides an essential tool for the further study of zebrafish otic vesicle formation and the development and regeneration of the skeleton. genesis 48:505–511, 2010.


BMC Developmental Biology | 2013

FishFace: interactive atlas of zebrafish craniofacial development at cellular resolution

B. Frank Eames; April DeLaurier; Bonnie Ullmann; Tyler R. Huycke; James T. Nichols; John Dowd; Marcie McFadden; Mark M. Sasaki; Charles B. Kimmel

BackgroundThe vertebrate craniofacial skeleton may exhibit anatomical complexity and diversity, but its genesis and evolution can be understood through careful dissection of developmental programs at cellular resolution. Resources are lacking that include introductory overviews of skeletal anatomy coupled with descriptions of craniofacial development at cellular resolution. In addition to providing analytical guidelines for other studies, such an atlas would suggest cellular mechanisms underlying development.DescriptionWe present the Fish Face Atlas, an online, 3D-interactive atlas of craniofacial development in the zebrafish Danio rerio. Alizarin red-stained skulls scanned by fluorescent optical projection tomography and segmented into individual elements provide a resource for understanding the 3D structure of the zebrafish craniofacial skeleton. These data provide the user an anatomical entry point to confocal images of Alizarin red-stained zebrafish with transgenically-labelled pharyngeal arch ectomesenchyme, chondrocytes, and osteoblasts, which illustrate the appearance, morphogenesis, and growth of the mandibular and hyoid cartilages and bones, as viewed in live, anesthetized zebrafish during embryonic and larval development. Confocal image stacks at high magnification during the same stages provide cellular detail and suggest developmental and evolutionary hypotheses.ConclusionThe FishFace Atlas is a novel learning tool for understanding craniofacial skeletal development, and can serve as a reference for a variety of studies, including comparative and mutational analyses.


Evolution | 2012

Independent axes of genetic variation and parallel evolutionary divergence of opercle bone shape in threespine stickleback

Charles B. Kimmel; William A. Cresko; Patrick C. Phillips; Bonnie Ullmann; Mark Currey; Frank A. von Hippel; Bjarni K. Kristjánsson; Ofer Gelmond; Katrina McGuigan

Evolution of similar phenotypes in independent populations is often taken as evidence of adaptation to the same fitness optimum. However, the genetic architecture of traits might cause evolution to proceed more often toward particular phenotypes, and less often toward others, independently of the adaptive value of the traits. Freshwater populations of Alaskan threespine stickleback have repeatedly evolved the same distinctive opercle shape after divergence from an oceanic ancestor. Here we demonstrate that this pattern of parallel evolution is widespread, distinguishing oceanic and freshwater populations across the Pacific Coast of North America and Iceland. We test whether this parallel evolution reflects genetic bias by estimating the additive genetic variance–covariance matrix (G) of opercle shape in an Alaskan oceanic (putative ancestral) population. We find significant additive genetic variance for opercle shape and that G has the potential to be biasing, because of the existence of regions of phenotypic space with low additive genetic variation. However, evolution did not occur along major eigenvectors of G, rather it occurred repeatedly in the same directions of high evolvability. We conclude that the parallel opercle evolution is most likely due to selection during adaptation to freshwater habitats, rather than due to biasing effects of opercle genetic architecture.


Evolution & Development | 2012

Developmental dissociation in morphological evolution of the stickleback opercle

Charles B. Kimmel; Paul A. Hohenlohe; Bonnie Ullmann; Mark Currey; William A. Cresko

Oceanic threespine sticklebacks have repeatedly and independently evolved new morphologies upon invasions of freshwater habitats. A consistent derived feature of the freshwater form across populations and geography is a shape change of the opercle, a large early developing facial bone. We show that the principal multivariate axis describing opercle shape development from the young larva to the full adult stage of oceanic fish matches the principal axis of evolutionary change associated with relocation from the oceanic to freshwater habitat. The opercle phenotype of freshwater adults closely resembles the phenotype of the bone in juveniles. Thus, evolution to the freshwater condition is in large part by truncation of development; the freshwater fish do not achieve the full ancestral adult bone shape. Additionally, the derived state includes dissociated ontogenetic changes. Dissociability may reflect an underlying modular pattern of opercle development, and facilitate flexibility of morphological evolution.


Behaviour | 2008

Allometric change accompanies opercular shape evolution in Alaskan threespine sticklebacks

Charles B. Kimmel; Windsor E. Aguirre; Bonnie Ullmann; Mark Currey; William A. Cresko

Summary How does development evolve to produce a skeletal element with a new shape? We extend our previous study of morphological evolution and development of the opercle, a large facial bone with favorable attributes for both comparative and development analyses. The opercle becomes prominently reshaped when Alaskan anadromous stickleback fish evolve into resident freshwater lacustrine forms. We use geometric morphometrics to examine the opercle shape change which includes a prominent dilation of the bone along one axis, coupled with diminution along the orthogonal axis. During juvenile to adult development, the opercles of both the ancestral and derived forms change in shape as they grow in size, and the allometries differ between the two forms. Hence, a feature of morphological evolution in this system is the appearance of a novel shape‐size developmental trajectory in the lacustrine fish. We include a model explaining the ancestral allometric pattern of bone growth, and how growth must be reorganized to bring about the evolutionary change in shape.


Developmental Dynamics | 1995

Stages of embryonic development of the zebrafish

Charles B. Kimmel; William W. Ballard; Seth R. Kimmel; Bonnie Ullmann; Thomas F. Schilling


Developmental Biology | 1998

The shaping of pharyngeal cartilages during early development of the zebrafish.

Charles B. Kimmel; Craig T. Miller; Greg Kruze; Bonnie Ullmann; Ruth A. BreMiller; Karen Larison; Hannah C. Snyder


Proceedings of the National Academy of Sciences of the United States of America | 2005

Evolution and development of facial bone morphology in threespine sticklebacks

Charles B. Kimmel; Bonnie Ullmann; Charline Walker; Catherine Wilson; Mark Currey; Patrick C. Phillips; Michael A. Bell; John H. Postlethwait; William A. Cresko

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