Boris Mizaikoff

Application of multivariate data-analysis techniques to biomedical diagnostics based on mid-infrared spectroscopy

The objective of this contribution is to review the application of advanced multivariate data-analysis techniques in the field of mid-infrared (MIR) spectroscopic biomedical diagnosis. MIR spectroscopy is a powerful chemical analysis tool for detecting biomedically relevant constituents such as DNA/RNA, proteins, carbohydrates, lipids, etc., and even diseases or disease progression that may induce changes in the chemical composition or structure of biological systems including cells, tissues, and bio-fluids. However, MIR spectra of multiple constituents are usually characterized by strongly overlapping spectral features reflecting the complexity of biological samples. Consequently, MIR spectra of biological samples are frequently difficult to interpret by simple data-analysis techniques. Hence, with increasing complexity of the sample matrix more sophisticated mathematical and statistical data analysis routines are required for deconvoluting spectroscopic data and for providing useful results from information-rich spectroscopic signals. A large body of work relates to the combination of multivariate data-analysis techniques with MIR spectroscopy, and has been applied by a variety of research groups to biomedically relevant areas such as cancer detection and analysis, artery diseases, biomarkers, and other pathologies. The reported results indeed reveal a promising perspective for more widespread application of multivariate data analysis in assisting MIR spectroscopy as a screening or diagnostic tool in biomedical research and clinical studies. While the authors do not mean to ignore any relevant contributions to biomedical analysis across the entire electromagnetic spectrum, they confine the discussion in this contribution to the mid-infrared spectral range as a potentially very useful, yet underutilized frequency region. Selected representative examples without claiming completeness will demonstrate a range of biomedical diagnostic applications with particular emphasis on the advantageous interaction between multivariate data analysis and MIR spectroscopy.

Advances in the analysis of mycotoxins and its quality assurance

This article covers the latest activities in mycotoxin analysis and the advances of its respective quality assurance. The majority of mycotoxin analyses carried out in the laboratories is still based on physicochemical methods, which are continually improved. For example, immunoaffinity columns and multifunctional clean–up columns have become of increasing importance and in some areas of mycotoxin analysis they have more or less displaced conventional liquid–liquid partitioning or column chromatography during clean–up. The need for rapid yes/no decisions on the other hand has led to a number of new screening methods. In particular, rapid and easy–to–use test kits based on immunoanalytical principles or the generation of artificial macromolecular receptors employed in molecularly imprinted polymers (MIPs) have made good progress. Further research in mycotoxin analysis is pursued in the field of biosensors and also the potential of infrared spectroscopic techniques as screening method has been demonstrated. In the area of multi mycotoxin analysis the most promising development was observed in mass spectrometry. At the same time, several interlaboratory studies in the field of mycotoxin analysis revealed problems proven by high between laboratory standard deviation and non–traceable results. This not only shows the necessity of reliable methods and well defined performance characteristics but also the need for appropriate calibrants of defined concentration and stated purity. A certified zearalenone (ZON) calibrant is already available and a certified calibrant containing various trichothecenes is currently under development. (Certified) reference materials are available for aflatoxins in a number of commodities, ochratoxin A (OTA) in wheat, deoxynivalenol (DON) in maize and wheat, and ZON in maize. With these measures important steps towards traceability of results in mycotoxin analysis have been achieved.

PolyDADMAC and Dimethylamine as Precursors of N-Nitrosodimethylamine during Ozonation: Reaction Kinetics and Mechanisms

Interactions of ozone with organic precursors during water treatment may generate carcinogenic N-nitrosodimethylamine (NDMA) byproduct. This study investigates the reaction mechanisms responsible for NDMA formation from ozonation of the commonly used poly(diallyldimethylammonium chloride) (polyDADMAC) coagulant. Upon ozonation, polyDADMAC yields the highest amount of NDMA among several water treatment polymers, including polyamines and cationic polyacrylamides. Ozonation transforms polyDADMAC to dimethylamine (DMA) and NDMA formation is correlated to polyDADMAC degradation and DMA release. Hydroxyl radicals generated from ozone play an important role in the degradation of polyDADMACs quaternary ammonium ring groups and subsequent release of secondary amine. Although nitrite and formaldehyde are detected as ozonation products of DMA and polyDADMAC, contribution of formaldehyde-enhanced nitrosation pathway is determined to be insignificant in NDMA formation. In contrast, reaction of hydroxylamine, another ozonation product of DMA, with DMA in the presence of ozone is deemed critical in the formation of NDMA during ozonation. The study results show that that contact of polyDADMAC with ozone will lead to release of the more potent NDMA precursor DMA but may not generate a significant amount of NDMA under typical drinking water treatment conditions due to low yield. The mechanistic understanding from this study can help develop source control strategies for minimization of NDMA formation risk at water and wastewater utilities.

Improving methods of analysis for mycotoxins: molecularly imprinted polymers for deoxynivalenol and zearalenone

Selective polymeric phases intended for future use in separation/extraction of deoxynivalenol and zearalenone from beverages have been prepared. Using crystalline deoxynivalenol, zearalenone and quercetin, molecularly imprinted polymers were obtained by a non-covalent imprinting approach via a photo-initiated addition polymerization. Prepared polymers were based on 4-vinylpyridine, methacrylic acid or 2-trifluoromethylacrylic acid as the functional monomer and on ethyleneglycol dimethacrylate, trimethyltrimethacrylate or divinylbenzene as the cross-linking monomer. Selectivity of the generated molecularly imprinted polymers has been investigated by application of the prepared molecularly imprinted polymers as stationary phases in high-pressure liquid chromatography experiments. The retention and elution behaviours of the template compounds and structurally related substances were determined and compared. The results promise future application of molecularly imprinted polymers as alternative selective matrices for clean-up and enrichment of deoxynivalenol and zearalenone.

Molecular imprinting and solid phase extraction of flavonoid compounds

Molecularly imprinted polymers (MIPs) for quercetin have been successfully prepared by a thermal polymerization method using 4-vinylpyridine (4-VP) and ethylene glycol dimethacrylate (EDMA) as functional monomer and cross-linker, respectively. The obtained molecularly imprinted polymers were evaluated by HPLC using organic eluents, with respect to their selective recognition properties for quercetin and related compounds of the flavonoid class. Two equivalent control polymers, a blank polymer and a polymer imprinted with a structural analogous template, were synthesized, in order to confirm the obtained results. Furthermore, preliminary experiments confirm the applicability of the prepared MIPs for solid phase extraction (SPE), as rapid and facile clean-up of wine samples for HPLC analysis is an envisaged field of application. The successful preparation of molecularly imprinted polymers for flavones provides an innovative opportunity for the development of advanced separation materials, with applications in the field of wine and fermentation analysis.

Mid-infrared evanescent wave sensors - a novel approach for subsea monitoring

The sustained health of the marine ecosystems can be seen as a research task of substantial importance, since increasing pollution of the oceans poses a serious threat to the global water resources. Hence, understanding of the physical, chemical and biological parameters determining the condition of the oceans demands persistent monitoring of the aquatic environment. This requires the development of advanced screening instrumentation capable of continuous in situ and real-time monitoring of hazardous pollutants. Remotely operated optical sensor systems able to withstand harsh measurement conditions represent a promising alternative to conventional methods involving extensive sampling procedures. Thus, interest in emerging novel sensor techniques has substantially increased during the last decade. This paper summarizes first achievements towards the development of mid-infrared fibre-optic evanescent wave sensors operating in the spectral range 3-20 µm in seawater. This wavelength region is particularly attractive for optical sensing, since molecule-specific information due to the stimulation of ground vibrational modes of organic substances is provided. First results focusing on the detection of chlorinated hydrocarbons reveal the feasibility of this approach, with detection limits in the low ppb concentration range in artificial seawater. As well as the design of a miniaturized subsea sensor module based on Fourier transform infrared spectroscopy, possibly interfering parameters such as salinity and turbidity are investigated under laboratory conditions.

The role of conditioning film formation and surface chemical changes on Xylella fastidiosa adhesion and biofilm evolution

Biofilms are complex microbial communities with important biological functions including enhanced resistance against external factors like antimicrobial agents. The formation of a biofilm is known to be strongly dependent on substrate properties including hydrophobicity/hydrophilicity, structure, and roughness. The adsorption of (macro)molecules on the substrate, also known as conditioning film, changes the physicochemical properties of the surface and affects the bacterial adhesion. In this study, we investigate the physicochemical changes caused by Periwinkle wilt (PW) culture medium conditioning film formation on different surfaces (glass and silicon) and their effect on X. fastidiosa biofilm formation. Contact angle measurements have shown that the film formation decreases the surface hydrophilicity degree of both glass and silicon after few hours. Atomic force microscopy (AFM) images show the glass surface roughness is drastically reduced with conditioning film formation. First-layer X. fastidiosa biofilm on glass was observed in the AFM liquid cell after a period of time similar to that determined for the hydrophilicity changes. In addition, attenuation total reflection-Fourier transform infrared (ATR-FTIR) spectroscopy supports the AFM observation, since the PW absorption spectra increases with time showing a stronger contribution from the phosphate groups. Although hydrophobic and rough surfaces are commonly considered to increase bacteria cell attachment, our results suggest that these properties are not as important as the surface functional groups resulting from PW conditioning film formation for X. fastidiosa adhesion and biofilm development.

Midinfrared sensors meet nanotechnology: Trace gas sensing with quantum cascade lasers inside photonic band-gap hollow waveguides

An integrated midinfrared sensing system for trace level (ppb) gas analysis combining a quantum cascade laser with an emission frequency of 10.3μm with a frequency matched photonic band-gap hollow core waveguide has been developed, demonstrating the sensing application of photonic band-gap fibers. The photonic band-gap fiber simultaneously acts as a wavelength selective waveguide and miniaturized gas cell. The laser emission wavelength corresponds to the vibrational C–H stretch band of ethyl chloride gas. This sensing system enabled the detection of ethyl chloride at concentration levels of 30ppb (v∕v) with a response time of 8s probing a sample volume of only 1.5mL in a transmission absorption measurement within the photonic band-gap hollow core waveguide, which corresponds to a sensitivity improvement by three orders of magnitude compared to previously reported results obtained with conventional hollow waveguides.

Breath analysis with broadly tunable quantum cascade lasers.

With the availability of broadly tunable external cavity quantum cascade lasers (EC-QCLs), particularly bright mid-infrared (MIR; 3-20 μm) light sources are available offering high spectral brightness along with an analytically relevant spectral tuning range of >2 μm. Accurate isotope ratio determination of (12)CO2 and (13)CO2 in exhaled breath is of critical importance in the field of breath analysis, which may be addressed via measurements in the MIR spectral regime. Here, we combine for the first time an EC-QCL tunable across the (12)CO2/(13)CO2 spectral band with a miniaturized hollow waveguide gas cell for quantitatively determining the (12)CO2/(13)CO2 ratio within the exhaled breath of mice. Due to partially overlapping spectral features, these studies are augmented by appropriate multivariate data evaluation and calibration techniques based on partial least-squares regression along with optimized data preprocessing. Highly accurate determinations of the isotope ratio within breath samples collected from a mouse intensive care unit validated via hyphenated gas chromatography-mass spectrometry confirm the viability of IR-HWG-EC-QCL sensing techniques for isotope-selective exhaled breath analysis.

FIB/SEM tomography with TEM-like resolution for 3D imaging of high-pressure frozen cells

Focused ion beam/scanning electron microscopy (FIB/SEM) tomography is a novel powerful approach for three-dimensional (3D) imaging of biological samples. Thereby, a sample is repeatedly milled with the focused ion beam (FIB) and each newly produced block face is imaged with the scanning electron microscope (SEM). This process can be repeated ad libitum in arbitrarily small increments allowing 3D analysis of relatively large volumes such as eukaryotic cells. High-pressure freezing and freeze substitution, on the other hand, are the gold standards for electron microscopic preparation of whole cells. In this work, we combined these methods and substantially improved resolution by using the secondary electron signal for image formation. With this imaging mode, contrast is formed in a very small, well-defined area close to the newly produced surface. By using this approach, small features, so far only visible in transmission electron microscope (TEM) (e.g., the two leaflets of the membrane bi-layer, clathrin coats and cytoskeletal elements), can be resolved directly in the FIB/SEM in the 3D context of whole cells.