Brahim Akdim

Switching behavior of carbon chains bridging graphene nanoribbons: effects of uniaxial strain.

Recently, several experiments demonstrated the stability of chain-like carbon nanowires bridged between graphene nanoribbons, paving the way for potential applications in nanodevices. On the basis of density functional tight-binding calculations, we demonstrated switching for chains terminated with a five-membered ring under an applied strain, serving as a model for morphological changes in realistic materials. Electron transport calculations showed an increase of up to 100% in the output current, achieved at a reverse bias voltage of -2 V and an applied strain of just 1.5%. Structural analysis suggested that the switching is driven by conformational changes, where in our case is triggered by the formation and annihilation of a five-membered ring at the interface of the chain-graphene edge. In addition, we showed that a five-membered ring can easily be formed at the interface under a source-drain bias or through a gate voltage. This mechanism can serve as an explanation of experimentally observed conductance for the materials.

On modeling biomolecular–surface nonbonded interactions: application to nucleobase adsorption on single-wall carbon nanotube surfaces

In this work we explored the selectivity of single nucleobases towards adsorption on chiral single-wall carbon nanotubes (SWCNTs) by density functional theory calculations. Specifically, the adsorption of molecular models of guanine (G), adenine (A), thymine (T), and cytosine (C), as well as of AT and GC Watson-Crick (WC) base pairs on chiral SWCNT C(6, 5), C(9, 1) and C(8, 3) model structures, was analyzed in detail. The importance of correcting the exchange-correlation functional for London dispersion was clearly demonstrated, yet limitations in modeling such interactions by considering the SWCNT as a molecular model may mask subtle effects in a molecular-macroscopic material system. The trend in the calculated adsorption energies of the nucleobases on same diameter C(6, 5) and C(9, 1) SWCNT surfaces, i.e., G > A > T > C, was consistent with related computations and experimental work on graphitic surfaces, however contradicting experimental data on the adsorption of single-strand short homo-oligonucleotides on SWCNTs that demonstrated a trend of G > C > A > T (Albertorio et al 2009 Nanotechnology 20 395101). A possible role of electrostatic interactions in this case was partially captured by applying the effective fragment potential method, emphasizing that the interplay of the various contributions in modeling nonbonded interactions is complicated by theoretical limitations. Finally, because the calculated adsorption energies for Watson-Crick base pairs have shown little effect upon adsorption of the base pair farther from the surface, the results on SWCNT sorting by salmon genomic DNA could be indicative of partial unfolding of the double helix upon adsorption on the SWCNT surface.

Theoretical analysis of the combined effects of sulfur vacancies and analyte adsorption on the electronic properties of single-layer MoS2

We report a first-principles theoretical investigation on the electronic structure and electron transport of defective single-layer (SL) MoS2, as well as of corresponding structures adsorbed with benzyl viologen (BV), which was shown to provide improved performance of a field effect transistor. O2 adsorption was included to gain an understanding of the response upon air-exposure. Following analysis of the structure and stability of sulfur single vacancy and line defects in SL MoS2, we investigated the local transport at the adsorbed sites via a transport model that mimics a scanning tunneling spectroscopy experiment. Distinct current-voltage characteristics were indicated for adsorbed oxygen species at a sulfur vacancy. The electronic structures of defective MoS2 indicated the emergence of impurity states in the bandgap due to sulfur defects and oxygen adsorption. Electron transport calculations for the MoS2 surface with an extended defect in a device setting demonstrated that physisorption of BV enhances the output current, while facile chemisorption by O2 upon air-exposure causes degradation of electron transport.

Self-assembled peptide nanotubes as electronic materials: An evaluation from first-principles calculations

In this letter, we report on the evaluation of diphenylalanine (FF), dityrosine (YY), and phenylalanine-tryptophan (FW) self-assembled peptide nanotube structures for electronics and photonics applications. Realistic bulk peptide nanotube material models were used in density functional theory calculations to mimic the well-ordered tubular nanostructures. Importantly, validated functionals were applied, specifically by using a London dispersion correction to model intertube interactions and a range-separated hybrid functional for accurate bandgap calculations. Bandgaps were found consistent with available experimental data for FF, and also corroborate the higher conductance reported for FW in comparison to FF peptide nanotubes. Interestingly, the predicted bandgap for the YY tubular nanostructure was found to be slightly higher than that of FW, suggesting higher conductance as well. In addition, the band structure calculations along the high symmetry line of nanotube axis revealed a direct bandgap for FF. The results enhance our understanding of the electronic properties of these material systems and will pave the way into their application in devices.

A Density Functional Theory Study of Oxygen Adsorption at Silver Surfaces: Implications for Nanotoxicity

The formation of superoxide at Ag(100) and Ag(111) surfaces for cluster and periodic slab models is studied by applying first-principles density functional theory calculations, including ab-initio molecular dynamics. Adsorption energies and structural parameters are discussed in detail. Charge transfer analyses indicate that O2- preferentially forms on clusters, particularly at an Ag(100) surface.

Effects of o 3 adsorption on the emission properties of single-wall carbon nanotubes: a density functional theory study

In this study, we report density functional theory calculations to examine the effects of O3 adsorption on the field emission properties of capped C(5,5) single-wall carbon nanotubes. Structural changes, adsorption energies, and the first ionization potential for possible adsorption sites are discussed, including an applied field in the calculations. The results suggest a suppression of the emission upon O3 adsorption, explained by the charge transfer, while the favored adsorption for the etched structures rationalizes enhancement due to sharper tips upon opening of the carbon nanotube when ozonized, consistent with experimental observations.

Functionalization of Single-Wall Carbon Nanotubes: An Assessment of Computational Methods

We summarize a theoretical study for modeling functionalization of single-wall carbon nanotubes (SWCNTs), specifically first principles density functional theory calculations, as compared to semi-empirical or simplified hierarchical methods. We focus on the assessment of the methods to be applied to obtain reliable results and gain a fundamental understanding of the diazotization and ozonolysis of SWCNTs. Computational challenges encountered are highlighted.