Brendan J. Keely

Development and application of a high resolution liquid chromatographic method for the analysis of complex pigment distributions

Ternary and binary gradient systems have been developed for the high-performance liquid chromatographic analysis of complex pigment distributions typical of natural samples. Improved chromatographic resolution reveals significantly more pigment components in extracts from a sediment (Priest Pot, Cumbria, UK), a microbial mat (les Salines de la Trinital, South Catalonia, Spain) and a culture (C. phaeobacteroides) including novel bacteriochlorophyll derivatives. The methods developed are directly suited to LC-MS analysis and the automated acquisition of MS/MS data for pigments.

Analysis of glyphosate and glufosinate by capillary electrophoresis-mass spectrometry utilising a sheathless microelectrospray interface

The potential of capillary electrophoresis combined with mass spectrometry for the simultaneous determination of two herbicides (glyphosate and glufosinate) and their metabolites (aminomethylphosphonic acid and methylphosphinicopropionic acid) as the native species is demonstrated utilising a simple microelectrospray interface. The interface uses the voltage applied to the CE capillary to drive separation and generate the electrospray, avoiding sample dilution associated with the use of a sheath liquid interface. The chemistry of the internal walls of the capillary has a marked influence on peak shape, and appropriate choice is essential to successful operation of the interface. A linear polyacrylamide coated capillary, which has no electroosmotic flow, gave best reproducibility, with precision of migration time and peak area in the range 1-2 and 7-12% RSD, respectively, for the four analytes. Limits of detection, low-pg on-column, are substantially better than for previous methods and calibration curves over the range 1-100 microM have R2 values greater than 0.97. The observed concentration limit of detection for glyphosate in water is 1 microM and for a water-acetone extract of wheat is 2.5 microM, allowing the underivatised herbicide to be detected at 10% of the maximum residue limit in wheat.

Variations in abundances and distributions of isoprenoid chromans and long-chain alkylbenzenes in sediments of the Mulhouse Basin: a molecular sedimentary record of palaeosalinity☆

Abstract The abundances and distribution patterns of mono-, di- and trimethylated 2-methyl-2-(4,8,12-trimethyltridecyl) chromans (MTTCs) and long-chain alkylbenzenes in extracts of marl (66 samples), anhydrite (15) and halite (1) strata of the Salt IV Formation of the Oligocene Mulhouse Basin are reported. The distributions of the methylated MTTCs indicate salinity changes of the upper part of a density stratified water column of the basin. These variations are explained by a tectonically or climatically induced change in the supply of water of relative lower salinity to form a layer overlying the deeper water brine. Hence, it is suggested that mesohaline (3.5–15%) conditions in the surface waters were established as a result of periodic incursions of marine water and subsequent evaporation. Conversely, during periods when the surface water was derived mainly from fresh water from the hinterland, lower average salinity in the surface layer resulted. The distributions of long-chain alkylbenzenes also appear to record these changes.

Identification of chlorophyll transformation products in a lake sediment by combined liquid chromatography - mass spectrometry

Abstract Negative-ion liquid chromatographic-mass spectrometric analysis of the pigment composition of the bottom sediment (15–20 cm) of a eutrophic lake revealed the presence of a novel series of chlorophyll transformation products, in which a series of C 27 C 30 sterols and stanols are esterified to a pyrophaeophorbide a nucleus of algal origin. The major components are algal-derived chlorophyll a and b degradation products, and the presence of a bacteriochlorophyll-related phaeophytin indicates the presence of anoxic conditions extending into the photic zone when the sediment was laid down.

Sedimentary pigments as markers for environmental change in an Antarctic lake

Abstract Fossil pigments were identified in a sediment core from Kirisjes Pond, a small lake in the Larsemann Hills, east Antarctica, using reversed-phase HPLC and LC–MS/MS. Chlorophyll a- and b -derived components indicate the presence of oxygenic primary producers; steryl chlorin esters provide evidence of grazing, while shifts in their esterifying sterol composition record changes in the primary producer community. Bacteriochlorophyll c- and d -derived components, indicative of photic zone anoxia, were identified with structural variations including extensive alkylation in the macrocycle up to C 6 . The pigment distribution reveals a change from oxygenated freshwater to a stratified water body with development of photic zone anoxia. This coincides with a marine incursion identified from diatom records and is followed by re-isolation and reversion to oxygenated freshwater conditions.

A widespread chlorophyll transformation pathway in the aquatic environment

Combined liquid chromatography-mass spectrometry studies of the pigment distributions of a variety of lake and marine sediments from different depositional settings reveal the presence of steryl chlorin esters as significant components of the chlorin assemblages. The components are water column transformation products of phytoplankton chlorophyll a, and it is suggested that they form through an enzymatic esterification or transesterification process during senescence or decay. Remarkably, the steroidal alcohols are esterified mainly to a common nucleus, pyrophaeophorbide a. The transformation pathway involved appears to be a ubiquitous one in marine and lacustrine environments, and the components represent a significant sedimentary “sink” for the chlorophyll biosynthesised in the euphotic zone. Future water column studies of the changes in photosynthetic pigments in phytoplankton blooms and of pigment fluxes should take into account the likely presence of steryl chlorin esters.

Product distributions from chemical degradation of kerogens from a marl from a Miocene evaporitic sequence (Vena del Gesso, N. Italy)

Abstract Lithium in ethylamine ( Li EtNH 2 ) treatment has been carried out on sulphur-rich kerogens from 10 sub-samples of the cycle IV marl from the Vena del Gesso evaporitic sediments (Upper Miocene, Italy). The treatment releases, after chromatography of the resulting solvent extracts, up to 30% of the kerogen total organic carbon. The biomarkers released are dominated by components of algal origin. The concentrations of the aliphatic hydrocarbons obtained are of the same order of magnitude as the bound alkanes released upon desulphurization of polar fractions from organic extracts and show similar distributions. The presence of diaromatic isoprenoids derived from Chlorobiaceae indicates that photic zone anoxia occurred during the deposition of the cycle IV marl, such conditions being more prevalent at the middle of the section. Polar material makes up by far most of the organic material released and contains in particular alcohols and amides which may result from the cleavage of ester bonds present in these immature kerogens, the amides being secondary products formed by reaction with the EtNH2. In the case of the alcohols, however, these components could also arise from cleavage of sulphide-bound moieties.

Sources and transformations of chlorophylls and carotenoids in a monomictic sulphate-rich karstic lake environment

Abstract A study of the pigment composition in the water column particulates and bottom sediment column of an anoxic lake, Lake Ciso (Catalonia, Spain), has been carried out. The depth-dependencies of the carotenoid and chlorophyll distributions in the water column during stratification and holomixis, as well as during the diurnal cycles, have been determined. In the sediment, the composition of the pigments has been studied over the top 25 cm. The analyses were carried out by high performance liquid chromatography (HPLC) and HPLC coupled to mass spectrometry. The distributions of carotenoids, bacteriochlorophylls and chlorophylls in the water particulates closely follow the population dynamics of the photosynthetic organisms during stratification and holomixis. Among these, only chlorophyll a transformation products are found in the water column, namely phaeophytin a , pyrophaeophytin a and pyrophaeophorbide a . These derivatives also occur in the sediment, where they are found together with bacteriophaeophytin a and pyrobacteriophaeophytin a . This compartment-dependent occurrence corresponds to a higher degree of preservation of the bacterial vs algal pigments. The former occur in the anoxic hypolimnion or mixed water column during holomixis, and the latter in the oxic epilimnion. The presence of these compounds and the very low abundance of phaeophorbide a and absence of bacteriophaeophorbide a point to a transformation pathway where, in the absence of zooplankton grazing or high abundances of the enzyme chlorophyllase, the loss of the phytyl chain occurs predominantly after loss of the C-13 2 carbomethoxyl group. Okenone, alloxanthin, α-carotene and zeaxanthin/lutein are the major water column carotenoids. Their relative abundances contrast with their distribution in the sediments where okenone is the predominant compound and zeaxanthin/lutein are below detection limit. This effect may be in part a consequence of a more uniform okenone concentration in the water particulates over the year, leading to a higher annual sedimentation flux. Again, it may also be influenced by the higher degree of preservation of the bacterial vs algal carotenoids. A similar situation is observed for the relative abundances of chlorophyll a and bacteriochlorophyll a in water particulates and sediments.

Chlorophyll and carotenoid pigments in solar saltern microbial mats

The distributions of carotenoids, chlorophylls, and their degradation products have been studied in two microbial mat systems developed in the calcite and calcite/gypsum evaporite domains of a solar saltern system. Phormidium valderianum and Microcoleus chthonoplastes are the dominant cyanobacterial species, respectively, and large amounts of Chloroflexus-like bacteria occur in the carbonate/gypsum mat. In both systems, the major pigments are chlorophyll a, zeaxanthin, β-carotene and myxoxanthophyll, which originate from these mat-building cyanobacteria. This common feature contrasts with differences in other pigments that are specific for each mat community. Thus, chlorophyll c and fucoxanthin, reflecting diatom inputs, are only found in the calcite mat, whereas the calcite/gypsum mat contains high concentrations of bacteriochlorophylls c produced by the multicellular green filamentous bacteria. In both cases, the depth concentration profiles (0–30 and 0–40 mm) show a relatively good preservation of the cyanobacterial carotenoids, zeaxanthin, β-carotene, myxoxanthophyll, and echinenone. This contrasts with the extensive biodegradation of cyanobacterial remains observed microscopically. Fucoxanthin in the calcite mat is also transformed at a faster rate than the cyanobacterial carotenoids. Chlorophyll a, the major pigment in both mats, exhibits different transformation pathways. In the calcite/gypsum mat, it is transformed via C-132 carbomethoxy defunctionalization prior to loss of the phytyl chain, leading to the formation of pyrophaeophytin a and, subsequently, pyrophaeophorbide a. On the other hand, the occurrence of the enzyme chlorophyllase, attributed to diatoms in the calcite mat, gives rise to extensive phytyl hydrolysis, with the formation of chlorophyllide a, pyrophaeophorbide a and, in minor proportion, phaeophorbide a. Studies of the sources of the photosynthetic pigments and of their transformation pathways in such simplified ecosystems provide a basis for the understanding of the distribution patterns of these compounds in more complex aquatic environments.

An interlaboratory study of TEX86 and BIT analysis of sediments, extracts, and standard mixtures

Two commonly used proxies based on the distribution of glycerol dialkyl glycerol tetraethers (GDGTs) are the TEX86 (TetraEther indeX of 86 carbon atoms) paleothermometer for sea surface temperature reconstructions and the BIT (Branched Isoprenoid Tetraether) index for reconstructing soil organic matter input to the ocean. An initial round-robin study of two sediment extracts, in which 15 laboratories participated, showed relatively consistent TEX86 values (reproducibility +/- 3-4 degrees C when translated to temperature) but a large spread in BIT measurements (reproducibility +/- 0.41 on a scale of 0-1). Here we report results of a second round-robin study with 35 laboratories in which three sediments, one sediment extract, and two mixtures of pure, isolated GDGTs were analyzed. The results for TEX86 and BIT index showed improvement compared to the previous round-robin study. The reproducibility, indicating interlaboratory variation, of TEX86 values ranged from 1.3 to 3.0 degrees C when translated to temperature. These results are similar to those of other temperature proxies used in paleoceanography. Comparison of the results obtained from one of the three sediments showed that TEX86 and BIT indices are not significantly affected by interlaboratory differences in sediment extraction techniques. BIT values of the sediments and extracts were at the extremes of the index with values close to 0 or 1, and showed good reproducibility (ranging from 0.013 to 0.042). However, the measured BIT values for the two GDGT mixtures, with known molar ratios of crenarchaeol and branched GDGTs, had intermediate BIT values and showed poor reproducibility and a large overestimation of the true (i.e., molar-based) BIT index. The latter is likely due to, among other factors, the higher mass spectrometric response of branched GDGTs compared to crenarchaeol, which also varies among mass spectrometers. Correction for this different mass spectrometric response showed a considerable improvement in the reproducibility of BIT index measurements among laboratories, as well as a substantially improved estimation of molar-based BIT values. This suggests that standard mixtures should be used in order to obtain consistent, and molar-based, BIT values.