Brian N. Green

Linkage analysis in disaccharides by electrospray mass spectrometry.

Analysis of the structures of complex carbohydrates requires knowledge of the identity, anomeric configuration, and sequence of the sugar residues, and identification of the reducing terminus and the positions of the glycosidic linkages. Desorption-m.s. and f.a.b.-m.s. are powerful techniques for determining the sequence, the pattern of branching, and the molecular weight of oligosaccharides containing up to 30 sugar units, and the structure of the aglycon14. Negative-ion tandem-f.a.b.-m.s. can be used to discriminate between the linkage positions in underivatised oligosaccharides5,6. Electrospray (e.s.) ionisation has also been described7-9. Although most of the applications have been concerned with the determination of molecular weights and sequencing of proteins, some studies have shown that it can be applied to carbohydrates, and we now report its application in the linkage analysis of reducing disaccharides. The negative-ion e-S.-mass spectra of (1~2)(sophorose), (l-+3)(laminaribiose), (1+4)(cellobiose), and (l-+6)(gentiobiose), /I-linked glucodisaccharides shown in Figs. l-4, respectively, reflect the positions of the linkages. Each mass spectrum contains peaks at m/z 34 1 for (M H)and at m/z I79 and 16 1 associated with fragmentation which involves the glycosidic linkages. In addition to these peaks, there are peaks at m/z 323 (sophorose, Fig. l), 28 1 (cellobiose and gentiobiose, Figs. 3 and 4), 263 (sophorose and cellobiose Figs. 1 and 3), 251 (gentiobiose, Fig. 4), and 221 (sophorose, cellobiose, and gentiobiose, Figs. 1,3, and 4). For laminaribiose, only the peaks at m/z 341, 179, and 161 are present (Fig. 2). The peak at m/z 323 is due to loss of water from the (M H)ion, and those at m/z 281, 263, 251, and 221 are associated with fragments from the sugar rings which are diagnostic of the position of the linkage. These fragmentations are likely to involve the reducing moiety, since the non-reducing moieties are identical in the four disaccharides.

The Multi-hemoglobin System of the Hydrothermal Vent Tube Worm Riftia pachyptila II. COMPLETE POLYPEPTIDE CHAIN COMPOSITION INVESTIGATED BY MAXIMUM ENTROPY ANALYSIS OF MASS SPECTRA

The deep-sea tube worm Riftia pachyptila Jones possesses a complex of three extracellular Hbs: two in the vascular compartment, V1 (3500 kDa) and V2 (400 kDa), and one in the coelomic cavity, C1 (400 kDa). These native Hbs, their dissociation products and derivatives were subjected to electrospray ionization mass spectrometry (ESI-MS). The data were analyzed by the maximum entropy deconvolution system. We identified three groups of peaks for V1 Hb, at 16, 23-27, and 30 kDa, corresponding to (i) two monomeric globin chains, b (M 16,133.5) and c (M 16,805.9); (ii) four linker subunits, L1-L4 (M 23,505.2, 23,851.4, 26,342.4, and 27,425.8, respectively); and (iii) one disulfide-bonded dimer D1 (M 31,720.7) composed of globin chains d (M 15,578.5) and e (M 16,148.3). V2 and C1 Hbs had no linkers and contained a glycosylated monomeric globin chain, a (M 15,933.4) and a second dimer D2 (M 32,511.7) composed of chains e and f (M 16,368.1). The dimer D1 was absent from C1 Hb, clearly differentiating V2 and C1 Hbs. These Hbs were also subjected to SDS-PAGE analysis for comparative purposes. The following models are proposed ((cD1)(bD1)) for the one-twelfth protomer of V1 Hb, ((cD)(bD)(aD)) (D corresponding to either D1 or D2) for V2 and C1 Hbs. HBL V1 Hb would be composed of 180 polypeptide chains with 144 globin chains and 36 linker chains, each twelfth being in contact with three linker subunits, providing a total molecular mass = 3285 kDa. V2 and C1 would be composed of 24 globin chains providing a total molecular mass = 403 kDa and 406 kDa, respectively. These results are in excellent agreement with experimental M determined by STEM mass mapping and MALLS(8).

Structural characterization of sulfated glycosaminoglycans by fast atom bombardment mass spectrometry: application to heparin fragments prepared by chemical synthesis

We report herein the results of f.a.b.-m.s. experiments conducted on synthetic fragments of glycosaminoglycans, one of them representing the pentasaccharidic sequence present in heparin and responsible for the binding to antithrombin III, and the others being related to this sequence. The results indicate that f.a.b.-m.s. can be very useful for the structural analysis of sulfated glycosaminoglycans. The relatively small amounts of sample required enable molecular characterization at physiologically significant levels. In contrast to the chondroitin sulfates, the heparin saccharides analyzed and reported here do not provide sequence information. The data indicate that glycosidic rupture is not a process competing with the much more facile loss of N-sulfite residues. Dominating the spectra are a series of molecular-weight-related ions (distributed to indicate the associated countercation composition), and fragments related directly to sulfite elimination. This f.a.b.-induced, facile loss of sulfite may impose limitations in molecular-weight analysis for the larger oligomers.

Fast atom bombardment mass spectrometry of human proinsulin

Abstract The observation of protonated molecular species from human proinsulin obtained by fast atom bombardment mass spectrometry is reported.

Localization of o-glycosylation sites of MUC1 tandem repeats by QTOF ESI mass spectrometry

The potential of electrospray mass spectrometry (ESMS) for the sequencing of glycopeptides was evaluated using quadrupole time-of-flight (QTOF) technology in the MS/MS mode. The location of O-glycosylation sites was possible in the positive ion (+) mode by detection of prominent y- and b-fragment ions from the underivatized TAP25-2 [T1APPAHGVT9S10APDT14RPAPGS20T21APPA], an overlapping sequence of MUC1 tandem repeats which had been glycosylated in vitro by two GalNAc residues in the positions T9 and T21. The high mass resolution and accuracy of QTOF-(+)ESMS allowed reliable structural assignments. The reduced complexity of the fragment spectra and the higher signal-to-noise ratio render QTOF-(+)ESMS an alternative mass spectrometric approach to the identification of O-glycosylation sites when compared with sequencing by post-source decay matrix-assisted laser desorption/ionization MS. Diagnostic ions from the N-terminus in the b-series offered direct evidence, which was supported by indirect evidence from the C-terminus ions of the y-series. The higher glycosylated GalNAc2-substituted fragments were mainly observed as multiply ionized species.

Cytoglobin conformations and disulfide bond formation

The oligomeric state and kinetics of ligand binding were measured for wild‐type cytoglobin. Cytoglobin has the classical globin fold, with an extension at each extremity of about 20 residues. The extended length of cytoglobin leads to an ambiguous interpretation of its oligomeric state. Although the hydrodynamic diameter corresponds to that of a dimer, it displays a mass of a single subunit, indicating a monomeric form. Thus, rather than displaying a compact globular form, cytoglobin behaves hydrodynamically like a tightly packed globin with a greater flexibility of the N‐ and C‐terminal regions. Cytoglobin displays biphasic kinetics after the photolysis of CO, as a result of competition with an internal protein ligand, the E7 distal histidine. An internal disulfide bond may form which modifies the rate of dissociation of the distal histidine and apparently leads to different cytoglobin conformations, which may affect the observed oxygen affinity by an order of magnitude.

Potential of electrospray mass spectrometry for meat pigment identification

The potential of electrospray mass spectrometry (ESMS) to identify haem pigments from different species has been investigated. Purified haemoglobin and myoglobin from various sources (pig, beef, sheep and horse) were analysed by ESMS. The spectra showed ions corresponding to the molecular weights of the globin portions of the haemoproteins. When boiled and then analysed by ESMS, the globin chains remained intact but, on autoclaving for 1 h at 121°C, partial hydrolysis was observed, although the fragments could still be used to identify the origin of the haemoglobin. ESMS is a rapid, sensitive technique and may have potential as an analytical method for meat speciation.

Electrospray ionization mass spectrometric composition of the 400 kDa hemoglobin from the pogonophoran Oligobrachia mashikoi and the primary structures of three major globin chains.

Maximum entropy analysis of the electrospray ionization mass spectra of the native, carbamidomethylated, reduced and reduced and carbamidomethylated forms of the extracellular ca. 400 kDa hemoglobin of the pogonophoran Oligobrachia mashikoi has shown it to consist of eight globin chains: (a1-a5), 14861.1, 14937.1, 15040.7, 15070.6 and 15310.6 Da and b-dl, 15173.2, 15605.1 and 14775.4 Da, respectively. Although chains a1-a5 are monomeric, chains b + c form a disulfide-bonded dimer of 30776.8 Da and chains b + c + d1 form a disulfide-bonded trimer of 45551.9 Da. The major chains a5, b and c were separated by reverse-phase chromatography, and their cDNAs amplified by PCR using redundant oligomers based on their N-terminal amino-acid sequences. The complete amino-acid sequences of chains a5 (142 residues), b (140 residues) and c (147 residues) were derived from protein and cDNA sequencing and represent the first pogonophoran globin sequences. They have a high percent identity (35-52%) with the globin chains of the approximately 3500 kDa hexagonal bilayer hemoglobins from the annelids Lumbricus and Tylorrhynchus and the vestimentiferan Lamellibrachia, suggesting a very close relationship among the phyla Annelida, Pogonophora and Vestimentifera. Two free cysteine residues (Cys-73 and Cys-83), which we proposed to be the most probable candidates for the sulfide-binding sites in the Lamellibrachia chains (Suzuki, T., Takagi, T. and Ohta, S. (1990) Biochem. J. 266, 221-225), are also conserved in three chains (Cys-73 for chains b and c, and Cys-83 for chain a5) of Oligobrachia hemoglobin, in agreement with the probable role of the hemoglobin in the binding and transport of sulfide to the symbiotic bacteria which provide the metabolic fuel in the two phyla.

Fast atom bombardment: Evidence of disproportionation and recombination of a synthetic porphyrin in the matrix☆

In addition to dimerization and polymerization of samples as previously suggested, it appears that during FAB-MS, reactions in the sample matrix can occur to yield new compounds that are recombinations of molecular fragments. This type of reaction may be especially critical to the integrity of peptide sequencing using FAB, since the reactions cited in this report involve the formation and rupture of amides or peptide bonds.

Electrospray mass spectrometry for the analysis of opioid peptides and for the quantification of endogenous methionine enkephalin and β-endorphin

Electrospray ionization mass spectrometry was used to characterize several different neuropeptides, whose molecular weights ranged from 555 to 3463 Da, and to quantify endogenous methionine enkephalin (ME) and β -endorphin (β E) extracted from a human pituitary gland. Methionine enkephalin and leucine enkephalin both yield only an [M + H] + ion with electrospray mass spectrometry; the other peptides produce a series of multiply charged even-electron molecular ions of the general nature [M + nH]n+ in proportion to the number of basic amino acid units present, with no evidence of fragmentation. The electrospray mass spectra are characterized by low background noise. The quantiftcation of ME is based on a comliarison of the ion current due to the [M + H] + ion of native and of a deuterated ME ([2H5 s−4Phe]−ME) internal standard. The calibration curve is linear in the range of ca. 1-35 pmol synthetic ME. The amounts of ME determined in three separate human pituitary extracts were 9.1, 8.2, and 4.7 pmol/mg protein. The corresponding amount of ME in a canine pituitary was 39.8 pmol/mg protein. To quantify β E, the ion current due to the [M + 5H]5 + ion was monitored and compared to an external calibration curve obtained by analyzing solutions of synthetic β E in the range 5 μmol-50 pmol. The analysis of a human pituitary yielded 660 fmol β E/mg protein.