Brian Rasnow

The effects of simple objects on the electric field of Apteronotus

How might electric fish determine, from patterns of transdermal voltage changes, the size, shape, location, and impedance of a nearby object? I have investigated this question by measuring and simulating electric images of spheres and ellipsoids near an Apteronotus leptorhynchus. Previous studies have shown that this fishs electric field magnitude, and perturbations of the field due to objects, are complicated nonliner functions of distance from the fish. These functions become much simpler when distance is measured from the axes of symmetry of the fish and the object, instead of their respective edges. My analysis suggests the following characteristics of high frequency electric sense and electric images. 1. The shape of electric images on the fishs body is relatively independent of a spherical objects radius, conductivity, and rostrocaudal location. 2. An images relative width increases linearly with lateral distance, and might therefore unambiguously encode object distance. 3. Only objects with very large dielectric constants cause appreciable phase shifts, and the degree of shift depends strongly on water conductivity. 4. Several parameters, such as the range of electric sense, may depend on the rostrocaudal location of an object. Large objects may be detectable further from the head than the tail, and conversely, small objects may be detectable further from the tail than head. 5. Asymmetrical objects produce different electric images, correlated with their cross-sections, for different orientations and phases of the electric field. 6. The steep attenuation with distance of the field magnitude causes spatial distortions in electric images, somewhat analogous to the perspective distortion inherent in wide angle optical lenses.

The electric organ discharges of the gymnotiform fishes: I. Apteronotus leptorhynchus

We present high temporal and spatial resolution maps in 3-dimensions of the electric field vector generated by the weakly electric fish, Apteronotus leptorhynchus. The waveforms and harmonic composition of the electric organ discharge (EOD) are variable around the fish but highly stable over long times at any position. We examine the role of harmonics on the temporal and spatial characteristics of the EOD, such as the slew rate and rostral-to-caudal propagation. We also explore the radial symmetry of the fishs field. There are major differences in the direction of the electric field vector at the head and caudal body. In the caudal part of the fish, the electric field vector rotates during the EOD cycle. However, rostral of the pectoral fin, the field magnitude and sign oscillate while maintaining relatively constant orientation. We discuss possible functional ramifications of these electric field patterns to electrolocation, communication, and electrogenesis.

Phase and amplitude maps of the electric organ discharge of the weakly electric fish, Apteronotus leptorhynchus

SummaryThe electric organ discharge (EOD) potential was mapped on the skin and midplane of several Apteronotus leptorhynchus. The frequency components of the EOD on the surface of the fish have extremely stable amplitude and phase. However, the waveform varies considerably with different positions on the body surface. Peaks and zero crossings of the potential propagate along the fishs body, and there is no point where the potential is always zero. The EOD differs significantly from a sinusoid over at least one third of the body and tail. A qualitative comparison between fish showed that each individual had a unique spatiotemporal pattern of the EOD potential on its body.The potential waveforms have been assembled into high temporal and spatial resolution maps which show the dynamics of the EOD. Animation sequences and Macintosh software are available by anonymous ftp (mordor.cns.caltech.edu; cd/pub/ElectricFish).We interpret the EOD maps in terms of ramifications on electric organ control and electroreception. The electrocytes comprising the electric organ do not all fire in unison, indicating that the command pathway is not synchronized overall. The maps suggest that electroreceptors in different regions fulfill different computational roles in electroreception. Receptor mechanisms may exist to make use of the phase information or harmonic content of the EOD, so that both spatial and temporal patterns could contribute information useful for electrolocation and communication.

Electric organ discharges of the gymnotiform fishes: III. Brachyhypopomus.

Abstract We measured and mapped the electric fields produced by three species of neotropical electric fish of the genus Brachyhypopomus (Gymnotiformes, Rham phichthyoidea, Hypopomidae), formerly Hypopomus. These species produce biphasic pulsed discharges from myogenic electric organs. Spatio-temporal false-color maps of the electric organ discharges measured on the skin show that the electric field is not a simple dipole in Brachyhypopomus. Instead, the dipole center moves rostro-caudally during the 1st phase (P1) of the electric organ discharge, and is stationary during the 2nd phase (P2). Except at the head and tip of tail, electric field lines rotate in the lateral and dorso-ventral planes. Rostro-caudal differences in field amplitude, field lines, and spatial stability suggest that different parts of the electric organ have undergone selection for different functions; the rostral portions seem specialized for electrosensory processing, whereas the caudal portions show adaptations for d.c. signal balancing and mate attraction as well. Computer animations of the electric field images described in this paper are available on web sites http://www.bbb.caltech.edu/ElectricFish or http://www.fiu.edu/∼stoddard/electricfish.html.

The electric organ discharges of the gymnotiform fishes: II. Eigenmannia

Abstract We present detailed measurements of the electric organ discharge of the weakly electric fish, Eigenmannia sp. These maps illuminate, with high resolution in both space and time, the electric organ discharge potential and electric field patterns in the water about the fish and on the skin surface itself. The results demonstrate that the electric organ discharge of Eigenmannia approximates a simple oscillating dipole, which confirms previous descriptions and assumptions, but is in contrast to the electric organ discharges of several other gymnotiform species. Over each cycle of Eigenmannias electric organ discharge, the electric field amplitude measured at any point near the fish oscillates from positive to negative, but the field vector remains nearly constant in direction. This electric organ discharge pattern is correlated with known anatomical and physiological features of the fishs electric organ, and confirms that the activation of electrocytes comprising the organ is well synchronized. As a result, the relatively simple electric organ discharge leads to a fairly uniform pattern of electrosensory stimuli along the body surface, which may facilitate central processing of electrosensory images. Electric organ discharge maps and animations resulting from this series of studies are available via the Internet (http://www.bbb.caltech.edu/ElectricFish, or www.fiu.edu/∼stoddard/electricfish.html).

Applications of multimedia computers and video mixing to neuroethology

Inexpensive multimedia computers offer new possibilities for mixing video and computer images, videotaping these mixed images, and extracting quantitative data from videotape. In this paper we describe methods for mixing images from a video camera and a Macintosh computer display using chroma keying, and we describe a simple circuit for analog video mixing and frame-counting. We present three applications of these video mixing methods to our neurophysiological and behavioral research with awake, behaving animals. These technologies enhance accuracy, speed, and flexibility during experiments, by allowing us to record an information-rich videotape of the subject and state of the experimental apparatus. After the experiment, these technologies facilitate selecting and extracting quantitative data from the videotape for further analysis. The videotape is especially useful in resolving minor inconsistencies or incomplete information in the notes and data files that often arise during analysis of complex experiments.

G-protein-coupled receptor microarrays for multiplexed compound screening.

Conventional assay methods for discovering and profiling drug-target interactions are typically developed on a target-by-target basis and hence can be cumbersome to enable and orchestrate. Herein the authors report a solid-state ligand-binding assay that operates in a multiplexed mode to report compound activity against a micorarray-configured panel of G-protein-coupled receptor (GPCR) targets. The pharmacological fidelity of the system is high, and its miniaturized “plug-and-play” format provides improved efficiency both in terms of execution time and reagent consumption. Taken together, these features make the system ideally suited to explore the structure-activity relationship of compounds across a broad region of target class space.

Converting a Protease Assay to a Caliper® Format LabChip System

The push for higher throughput screening coupled with the desire to use smaller volumes of material has sparked the development of new technologies. Caliper Technologies, Corp. (Mountain View, CA) has designed a microfluidics chip with unique properties yet to be fully exploited. The translation from a traditional plate-based assay to a microfluidic chip format has provided insights into assay development, screening data requirements, and the technology itself. Running a screen with this new technology presented challenges in throughput, signal acquisition from slow-conversion enzymes, the provision for a negative control, the translation of a time series into a single data point per compound, reagent adhesion in the channels, and fluid property mismatches. Overcoming these obstacles has resulted in a simple, robust system with significant savings in reagent use. Measures to improve throughput and generalize the system will be discussed.

Hypercube Simulation of Electric Fish Potentials

We present a simulation of the electrosensory input of the weakly electric fish Apteronotus leptorhynchus. This fish senses its environment by producing a sinusoidal voltage difference between its body and tail sections, causing an electric field and a current distribution in the surrounding water. If an object is nearby which has different electrical conductivity from the surrounding water, the current distribution is disturbed on the skin of the fish. The fish senses this difference from the usual current distribution, and infers the presence and location of the object. Mathematically, the problem is to solve a potential equation in the domain exterior to the fish with Cauchy boundary conditions, in the presence of an induced dipole arising from the object, and extract the potential difference across the fish skin. We have created an unstructured triangular mesh covering the two-dimensional manifold of the fish skin, using the distributed Irregular Mesh Environment (DIME), then used the Boundary Element Method to solve for the potential derivative at the fish skin. The computational problem is the solution of a full set of simultaneous linear equations, where there is an equation for each node of the boundary mesh, typically about 100 - 200. We have used an NCUBE hypercube to calculate the matrix elements and solve these equations, once for each relative position of the fish and the test object. We present some early results from the simulation.

An Inexpensive Simple-to-Use Inverted Fluorescence Microscope: A New Tool for Cellular Analysis

Advances in laboratory instrumentation often increase the complexity, size, and cost of the device. The resulting complexity and cost, however, then reduce the accessibility of the device to many laboratories. We examine ways to use technological advances to simplify the design of laboratory devices, retaining the essential components that yield sufficient capabilities for routine uses. Inverted fluorescence microscopes, for example, have evolved into large complex instruments with exquisite imaging capability and are loaded with features requiring trained users and costing tens of thousands of dollars. This has limited their potential ubiquity within laboratories. For simple fluorescence microscopy applications, a much smaller and less expensive device with far fewer features would minimize the issues encountered with traditional inverted fluorescence microscopes. Advances in inexpensive complimentary metal-oxide semiconductor sensor technology have allowed its consideration as an alternative to the expensive charge-coupled device cameras currently used. Based on these advances, we have developed a compact, single-color, single-magnification device with a retail price an order of magnitude lower than current benchtop fluorescence microscopes. This device makes routine fluorescence microscopy applications immediately accessible to individual researchers and less well-funded laboratories. Tasks such as determining the presence of cells, their health, confluence, and fluorescent labeling or protein expression are compatible with such a simplified version. The low cost, small size, and ease of use of this device allows fluorescence microscopy to become more accessible for point-of-care medicine and at many points in the research process.