Bruce A. Bunker

X-ray absorption fine-structure determination of pH-dependent U-bacterial cell wall interactions.

X-ray absorption fine structure (XAFS) measurements was used at the U L3-edge to directly determine the pH dependence of the cell wall functional groups responsible for the absorption of aqueous UO22+ to Bacillus subtilis from pH 1.67 to 4.80. Surface complexation modeling can be used to predict metal distributions in water–rock systems, and it has been used to quantify bacterial adsorption of metal cations. However, successful application of these models requires a detailed knowledge not only of the type of bacterial surface site involved in metal adsorption/desorption, but also of the binding geometry. Previous acid-base titrations of B. subtilis cells suggested that three surface functional group types are important on the cell wall; these groups have been postulated to correspond to carboxyl, phosphoryl, and hydroxyl sites. When the U(VI) adsorption to B. subtilis is measured, observed is a significant pH-independent absorption at low pH values (<3.0), ascribed to an interaction between the uranyl cation and a neutrally charged phosphoryl group on the cell wall. The present study provides independent quantitative constraints on the types of sites involved in uranyl binding to B. subtilis from pH 1.67 to 4.80. The XAFS results indicate that at extremely low pH (pH 1.67) UO22+ binds exclusively to phosphoryl functional groups on the cell wall, with an average distance between the U atom and the P atom of 3.64 ± 0.01 A. This U-P distance indicates an inner-sphere complex with an oxygen atom shared between the UO22+ and the phosphoryl ligand. The P signal at extremely low pH value is consistent with the UO22+ binding to a protonated phosphoryl group, as previously ascribed. With increasing pH (3.22 and 4.80), UO22+ binds increasingly to bacterial surface carboxyl functional groups, with an average distance between the U atom and the C atom of 2.89 ± 0.02 A. This U-C distance indicates an inner-sphere complex with two oxygen atoms shared between the UO22+ and the carboxyl ligand. The results of this XAFS study confirm the uranyl-bacterial surface speciation model.

Adsorption of cadmium to Bacillus subtilis bacterial cell walls: A pH-dependent X-ray absorption fine structure spectroscopy study

The local atomic environment of Cd bound to the cell wall of the gram-positive bacterium Bacillus subtilis was determined by X-ray absorption fine structure (XAFS) spectroscopy. Samples were prepared at six pH values in the range 3.4 to 7.8, and the bacterial functional groups responsible for the adsorption were identified under each condition. Under the experimental Cd and bacterial concentrations, the spectroscopy results indicate that Cd binds predominantly to phosphoryl ligands below pH 4.4, whereas at higher pH, adsorption to carboxyl groups becomes increasingly important. At pH 7.8, we observe the activation of an additional binding site, which we tentatively ascribe to a phosphoryl site with smaller Cd-P distance than the one that is active at lower pH conditions. XAFS spectra of several cadmium acetate, phosphate, and perchlorate solutions were measured and used as standards for fingerprinting, as well as to assess the ability of FEFF8 and FEFFIT to model carboxyl, phosphoryl, and hydration environments, respectively. The results of this XAFS study in general corroborate existing surface complexation models; however, some binding mechanism details could only be detected with the XAFS technique.

How Does a SILAR CdSe Film Grow? Tuning the Deposition Steps to Suppress Interfacial Charge Recombination in Solar Cells.

Successive ionic layer adsorption and reaction (SILAR) is a popular method of depositing the metal chalcogenide semiconductor layer on the mesoscopic metal oxide films for designing quantum-dot-sensitized solar cells (QDSSCs) or extremely thin absorber (ETA) solar cells. While this deposition method exhibits higher loading of the light-absorbing semiconductor layer than direct adsorption of presynthesized colloidal quantum dots, the chemical identity of these nanostructures and the evolution of interfacial structure are poorly understood. We have now analyzed step-by-step SILAR deposition of CdSe films on mesoscopic TiO2 nanoparticle films using X-ray absorption near-edge structure analysis and probed the interfacial structure of these films. The film characteristics interestingly show dependence on the order in which the Cd and Se are deposited, and the CdSe-TiO2 interface is affected only during the first few cycles of deposition. Development of a SeO2 passivation layer in the SILAR-prepared films to form a TiO2/SeO2/CdSe junction facilitates an increase in photocurrents and power conversion efficiencies of quantum dot solar cells when these films are integrated as photoanodes in a photoelectrochemical solar cell.

Nonmetabolic Reduction of Cr(VI) by Bacterial Surfaces Under Nutrient-Absent Conditions

We have measured the ability of nonmetabolizing cells of the bacterial species Bacillus subtilis, Sporosarcina ureae , and Shewanella putrefaciens to reduce aqueous Cr(VI) to Cr(III) in the absence of externally supplied electron donors. Each species can remove significant amounts of Cr(VI) from solution, and the Cr(VI) reduction rate is strongly dependent on solution pH. The fastest reduction rates occur under acidic conditions, with decreasing rates with increasing pH. XANES data demonstrate that Cr(VI) reduction to Cr(III) occurs within the experimental systems. Control experiments indicate that the Cr removal is not a purely adsorptive process. Reduction appears to occur at the cell wall, and is not coupled to the oxidation of bacterial organic exudates. Detailed kinetic data suggest that the reduction involves at least a two-stage process, involving an initial rapid removal mechanism followed by a slower process that follows first-order reaction kinetics. Due to the prevalence of nonmetabolizing cells and cell wall fragments in soils and deeper geologic environments, our results suggest that the observed nonmetabolic reduction of Cr(VI) to Cr(III) may significantly affect the environmental distribution of Cr in bacteria-bearing systems.

XAFS determination of the bacterial cell wall functional groups responsible for complexation of Cd and U as a function of pH

Bacteria, which are ubiquitous in near-surface geologic systems, can affect the distribution and fate of metals in these systems through adsorption reactions between the metals and bacterial cell walls. Recently, Fein et al. (1997) developed a chemical equilibrium approach to quantify metal adsorption onto cell walls, treating the sorption as a surface complexation phenomenon. However, such models are based on circumstantial bulk adsorption evidence only, and the nature and mechanism of metal binding to cell walls for each metal system have not been determined spectroscopically. The results of XAFS measurements at the Cd K-edge and U L3-edge on Bacillus subtilis exposed to these elements show that, at low pH, U binds to phosphoryl groups while Cd binds to carboxyl functional groups.

Bioreduction of Hydrogen Uranyl Phosphate: Mechanisms and U(IV) Products

The mobility of uranium (U) in subsurface environments is controlled by interrelated adsorption, redox, and precipitation reactions. Previous work demonstrated the formation of nanometer-sized hydrogen uranyl phosphate (abbreviated as HUP) crystals on the cell walls of Bacillus subtilis, a non-U(VI)-reducing, Gram-positive bacterium. The current study examined the reduction of this biogenic, cell-associated HUP mineral by three dissimilatory metal-reducing bacteria, Anaeromyxobacter dehalogenans strain K, Geobacter sulfurreducens strain PCA, and Shewanella putrefaciens strain CN-32, and compared it to the bioreduction of abiotically formed and freely suspended HUP of larger particle size. Uranium speciation in the solid phase was followed over a 10- to 20-day reaction period by X-ray absorption fine structure spectroscopy (XANES and EXAFS) and showed varying extents of U(VI) reduction to U(IV). The reduction extent of the same mass of HUP to U(IV) was consistently greater with the biogenic than with the abiotic material under the same experimental conditions. A greater extent of HUP reduction was observed in the presence of bicarbonate in solution, whereas a decreased extent of HUP reduction was observed with the addition of dissolved phosphate. These results indicate that the extent of U(VI) reduction is controlled by dissolution of the HUP phase, suggesting that the metal-reducing bacteria transfer electrons to the dissolved or bacterially adsorbed U(VI) species formed after HUP dissolution, rather than to solid-phase U(VI) in the HUP mineral. Interestingly, the bioreduced U(IV) atoms were not immediately coordinated to other U(IV) atoms (as in uraninite, UO2) but were similar in structure to the phosphate-complexed U(IV) species found in ningyoite [CaU(PO4)2·H2O]. This indicates a strong control by phosphate on the speciation of bioreduced U(IV), expressed as inhibition of the typical formation of uraninite under phosphate-free conditions.

Indications of intrinsic chemical and structural inhomogeneity in lightly doped La1-xSrxMnO3.

X-ray absorption fine structure measurements of the Sr and La K edges of the solid solution La(1-x)SrxMnO3 reveal a consistent deviation from a random distribution of Sr at the La/Sr sites for x less than or similar to 0.3. Local structural disorder on the cation sublattice in the low-x samples is also observed to differ in the vicinity of the La-rich and Sr-rich clusters. The local clustering and structural disorder establish an intrinsic chemical as well as structural inhomogeneity on the nanometer scale, which may provide a mechanism for the nucleation of magnetoelectronic phase separation.

Extended x-ray-absorption fine-structure studies of Zn sub 1 minus x Mn sub x Se alloy structure

Bond lengths, Debye-Waller factors, and site occupancy in the diluted magnetic semiconductor Zn{sub 1{minus}{ital x}}Mn{sub {ital x}}Se have been measured using extended x-ray-absorption fine structure. The nearest-neighbor bond lengths at both room temperature and low temperature (77 K) are found to be constant as a function of alloy composition within the experimental uncertainty of 0.01 A. Because the average cation-cation distance changes with Mn content, these results necessarily imply distortion of the tetrahedral bond angles. The anion sublattice is shown to suffer the largest distortion, but the cation sublattice also exhibits some relaxation. The repercussions of these results are discussed, in terms of the amount of cation and anion sublattice distortion at low temperature and its connection to the superexchange mechanism occurring between the Mn{sup 2+} ions and mediated by the intervening anion in Zn{sub 1{minus}{ital x}}Mn{sub {ital x}}Se.

Photoinduced transformations at semiconductor/metal interfaces: X- ray absorption studies of titania/gold films

We have measured x-ray absorption fine structure of pre- and post-ultraviolet(UV)-irradiated gold (Au) deposited- titania (TiO2) nanocomposites in order to study the effect of UV irradiation on the charge state and local structures around Au in TiO2. Our results indicate a positive oxidation state of Au in TiO2 following UV irradiation and, in addition, a remarkable change is observed in the local environment between these samples as an effect of UV irradiation. The environment around Au, which is comprised mostly of Ti and O atoms prior to UV illumination, is seen to form Au clusters following UV illumination. The photoinduced chemical transformation established in this study demonstrates the nature of semiconductor/metal interface under UV irradiation, and its role in dictating long-term photoelectrochemical performance of nanocomposite photocatalysts.

X-Ray Absorption Fine-Structure Spectroscopy Studies of Fe Sites in Natural Human Neuromelanin and Synthetic Analogues

X-ray absorption fine-structure spectroscopy is used to study the local environment of the iron site in natural (human) neuromelanin extracted from substantia nigra tissue and in various synthetic neuromelanins. All the materials show Fe centered in a nearest neighbor sixfold (distorted) oxygen octahedron; the Fe-O distances, while slightly different in the natural and synthetic neuromelanin, are both approximately 2.0 A. Appreciable differences arise, however, in the second (and higher) coordination shells. In this case the synthetic melanin has the four planar oxygens bound to carbon rings with Fe-C distances of approximately 2.82 and 4.13 A; the human sample does not show the 2.82 A link but instead indicates a double shell at approximately 3.45 and 3.78 A.