Bruce C. Gibb

High-definition self-assemblies driven by the hydrophobic effect: synthesis and properties of a supramolecular nanocapsule

High definition self-assemblies, those that possess order at the molecular level, are most commonly made from subunits possessing metals and metal coordination sites, or groups capable of partaking in hydrogen bonding. In other words, enthalpy is the driving force behind the free energy of assembly. The hydrophobic effect engenders the possibility of (nominally) relying not on enthalpy but entropy to drive assembly. Towards this idea, we describe how template molecules can trigger the dimerization of a cavitand in aqueous solution, and in doing so are encapsulated within the resulting capsule. Although not held together by (enthalpically) strong and directional non-covalent forces, these capsules possess considerable thermodynamic and kinetic stability. As a result, they display unusual and even unique properties. We discuss some of these, including the use of the capsule as a nanoscale reaction chamber and how they can bring about the separation of hydrocarbon gases.

Templation of the Excited-State Chemistry of α-(n-Alkyl) Dibenzyl Ketones: How Guest Packing within a Nanoscale Supramolecular Capsule Influences Photochemistry

Excited-state behavior of eight alpha-alkyl dibenzyl ketones (alkyl = CH3 through n-C8H17) that are capable of undergoing type II and/or type I photoreactions has been explored in isotropic solution and within a water-soluble capsule. The study consisted of two parts: photochemistry that explored the excited-state chemistry and an NMR analysis that revealed the packing of each guest within the capsule. The NMR data (COSY, NOESY, and TOCSY experiments) revealed that ternary complexes between alpha-alkyl dibenzyl ketones and the capsule formed by two cavitands are kinetically stable, and the guests fall into three packing motifs modulated by the length of the alpha-alkyl chain. In essence, the host is acting as an external template to promote the formation of distinct guest conformers. The major products from all eight guests upon irradiation either in hexane or in buffer solution resulted from the well-known Norrish type I reaction. However, within the capsule the excited-state chemistry of the eight ketones was dependent on the alkyl chain length. The first group consisted of alpha-hexyl, alpha-heptyl, and alpha-octyl dibenzyl ketones that yielded large amounts of Norrish type II products within the host, while in solution the major products were from Norrish type I reaction. The second group consists of alpha-butyl and alpha-pentyl dibenzyl ketones that yield equimolar amounts of two rearranged starting ketones within the capsule (combined yield of ca 60%), while in solution no such products were formed. The third group consisted of alpha-methyl, alpha-ethyl, and alpha-propyl dibenzyl ketones that within the capsule yielded only one (not two) rearranged starting ketone in larger amounts (21-35%) while in solution no rearrangement product was obtained. Variation in the photochemistry of the guest within the capsule, with respect to the alpha-alkyl chain length of the guest, highlights the importance of how a small variation in supramolecular structure can influence the selectivity within a confined nanoscale reactor.

Kinetic resolution of constitutional isomers controlled by selective protection inside a supramolecular nanocapsule

The concept of self-assembling container molecules as yocto-litre reaction flasks is gaining prominence. However, the idea of using such containers as a means of protection is not well developed. Here, we illustrate this idea in the context of kinetic resolutions. Specifically, we report on the use of a water-soluble, deep-cavity cavitand to bring about kinetic resolutions within pairs of esters that otherwise cannot be resolved because they react at very similar rates. Resolution occurs because the presence of the cavitand leads to a competitive binding equilibrium in which the stronger binder primarily resides inside the host and the weaker binding ester primarily resides in the bulk hydrolytic medium. For the two families of ester examined, the observed kinetic resolutions were highest within the optimally fitting smaller esters.

Guest Packing Motifs within a Supramolecular Nanocapsule and a Covalent Analogue

Two hosts that utilize the hydrophobic effect to assemble and/or encapsulate guest molecules were studied. The hosts, octa-acid (OA) and hexalene diamine-linked octa-acid (HOA), were shown to complex a broad range of n-alkanes up to n-hexacosane (C26H54). A combination of (1)H NMR, NMR diffusion, COSY, and NOESY experiments revealed four different guest packing motifs, depending on the size of the guest and the nature of the host. As a function of guest size, smooth transitions from one motif to the next were observed and allowed qualification of their relative stabilities. Furthermore, although the two hosts engender ostensibly identical encapsulation environments, their different assembly properties lead to quite distinct packing-motif profiles, i.e., how the motifs change as a function of guest size.

Dendronized supramolecular nanocapsules: pH independent, water-soluble, deep-cavity cavitands assemble via the hydrophobic effect.

At neutral pH, dendronized deep-cavity cavitands were shown to form supramolecular nanocapsules via assembly around a range of guest molecules.

Photo-Fries reaction in water made selective with a capsule

The water soluble capsule formed by a deep cavity cavitand with eight carboxylic acid groups controls product distribution during photo-Fries rearrangement of naphthyl esters in water by restricting the mobility of primary singlet radical pair.

Anion Complexation and The Hofmeister Effect

The (1)H NMR spectroscopic analysis of the binding of the ClO4(-) anion to the hydrophobic, concave binding site of a deep-cavity cavitand is presented. The strength of association between the host and the ClO4(-) anion is controlled by both the nature and concentration of co-salts in a manner that follows the Hofmeister series. A model that partitions this trend into the competitive binding of the co-salt anion to the hydrophobic pocket of the host and counterion binding to its external carboxylate groups successfully accounts for the observed changes in ClO4(-) affinity.

Water inside a hydrophobic cavitand molecule.

The structure and dynamics of water inside a water-soluble, bowl-shaped cavitand molecule with a hydrophobic interior are studied using molecular dynamics computer simulations. The simulations find that the number of inside water molecules is about 4.5, but it fluctuates from being completely empty to full on a time scale of tens of nanoseconds. The transition from empty to full is energetically favorable and entropically unfavorable. The water molecules inside have fewer hydrogen bonds than the bulk and in general weaker interactions; the lower energy results from the nearest-neighbor interactions with the cavitand atoms and the water molecules at the entrance of the cavitand, interactions that are lost upon dewetting. An analysis of translational and rotational motion suggests that the lower entropy of the inside water molecules is due to decreased translational entropy, which outweighs an increased orientational entropy. The cavitand molecule acts as a host binding hydrophobic guests, and dewetting can be induced by the presence of a hydrophobic guest molecule about 3 A above the entrance. At this position, the guest displaces the water molecules which stabilize the inside water molecules and the empty cavitand becomes more stable than the full.

Calorimetric Analysis of the 1:1 Complexes Formed between a Water-soluble Deep-cavity Cavitand, and Cyclic and Acyclic Carboxylic Acids

A water-soluble cavitand was shown to form 1:1 complexes with a series of acyclic and cyclic aliphatic carboxylic acids. Isothermal titration calorimetry was used to determine the standard molar enthalpy change (ΔH°) and binding constant (K a), and hence the Gibbs free energy (ΔG°) and entropy (ΔS°) change for the different complexes. The thermodynamic determinations were carried out from 288 to 318 K, allowing the standard molar heat capacity changes ( ) also to be derived. Typical of the processes driven by the hydrophobic effect, was observed to be proportional to the accessible (non-polar) surface area of the guest. The cyclic and acyclic guests displayed opposite trends; the heat capacity penalty upon binding increased with longer aliphatic chains, while the opposite was observed with the cyclic guests.

Thermodynamic Profiles of Salt Effects on a Host–Guest System: New Insight into the Hofmeister Effect

Isothermal titration calorimetry was used to probe how salts influence the thermodynamics of binding of guests to cavitand 1. Studies involved six Hofmeister salts covering the range of salting-in to strongly salting-out. The latter were found to reduce affinity. The cause of this was competitive binding of the weakly solvated anion to the hydrophobic pocket of the host. At the other extreme of the Hofmeister series, salts increased guest affinity. Two factors for this were evident. At low concentrations the data fitted a previously reported model that accounts for cation condensation to the outer carboxylates of the host (Carnagie, R.; Gibb, C. L. D.; Gibb, B. C., Angew. Chem., Int. Ed. 2014, 53 (43), 11498-11500). At higher concentrations, an as of yet unidentified contribution was observed that was noted to be guest dependent. Midcontinuum salts such as NaClO3 were found to enhance affinity at low concentrations, but weaken it at high concentrations; a nonmonotonic trend attributed to the aforementioned competing phenomena. In combination with previous work, the data presented here reveal that the Hofmeister effect evident in this system can be mostly attributed to solute-salt interactions.