Bruce Thompson

Relationships between sediment contamination and toxicity in San Francisco Bay

Sediment contamination and toxicity were monitored at 14 sites in San Francisco Bay between 1991 and 1996. Sediment contamination patterns were diAerent in the major reaches of the Bay, and at each site. Several contaminants were consistently above concentrations previously associated with toxicity at most sites. Bulk sediment bioassays using the amphipod Eohaustorius estuarius and sediment elutriate bioassays using larval bivalves (Mytilus spp., Crassostrea gigas) also indicated diAerent patterns of sediment toxicity in space and time. Sediments were most toxic to the amphipods at Redwood Creek (90% of the tests), and were toxic in at least half the tests conducted at five other sites. Sediment elutriates severely reduced normal bivalve larval development at the San Joaquin and Sacramento Rivers in all samples, but toxicity occurred in less than a third of the tests in the Central and South Bays. Toxicity could not be statistically related to seasonal freshwater flow or rainfall in the Bay, but seasonal variation in contaminant concentrations and toxicity was observed. Amphipod toxicity was inversely and significantly related to the mean eAects range-median quotient, suggesting that cumulative concentrations of several contaminants were related to toxicity. Further analysis identified suites of specific contaminants at each site that were variably related to amphipod toxicity at each site. Chlordanes, cadmium, and silver were significantly related to amphipod survival in the North Bay. Seasonal patterns in low, and high molecular weight polycyclic aromatic hydrocarbons (PAHs) were related to toxicity at Alameda, and metals and PAHs were related to toxicity at Castro Cove. Larval bivalve toxicity was associated with metals in bulk sediments, but elutriate chemistry was not measured, and relationships with toxicity could not be examined. Hypotheses about eAective concentrations of several

Assessment of macrobenthos response to sediment contamination in the San Francisco Estuary, California, USA

A multimetric benthic assessment method was developed for two benthic assemblages in the San Francisco Estuary (USA) using data from several monitoring programs collected over five years. Assessment indicators used were total number of taxa, total abundances, oligochaete abundances, number of molluscan taxa, number of amphipod taxa, and Capitella capitata and Streblospio benedicti abundances. Exceedances of the maximum or minimum indicator values in reference samples were used to assess test samples using a weight-of-evidence to obtain an assessment value. Only 2.5% of the samples from the deeper, offshore sites had benthic impacts, 14.3% of the samples from near wastewater discharges had impacts, and 78.3% of the samples from the estuary margins and channels were impacted. Impacted samples from both assemblages had significantly higher mean effects range-median quotient values (mERMq) than reference samples, total organic carbon (TOC) was significantly higher in the impacted samples from the mesohaline assemblage, and percent fines was significantly higher in the impacted samples from the polyhaline assemblage, reflecting the close associations of contaminants with fine sediments and organic material. In samples with mERMq below 0.050, there were no benthic impacts. The incidence of impacts remained low (9.4%) at mERMq below 0.146, but when mERMq was above 0.146, 68.2% of the samples had benthic impacts, and samples with mERMq above 0.740 were always impacted.

Calibration and evaluation of five indicators of benthic community condition in two California bay and estuary habitats

Many types of indices have been developed to assess benthic invertebrate community condition, but there have been few studies evaluating the relative performance of different index approaches. Here we calibrate and compare the performance of five indices: the Benthic Response Index (BRI), Benthic Quality Index (BQI), Relative Benthic Index (RBI), River Invertebrate Prediction and Classification System (RIVPACS), and the Index of Biotic Integrity (IBI). We also examine whether index performance improves when the different indices, which rely on measurement of different properties, are used in combination. The five indices were calibrated for two geographies using 238 samples from southern California marine bays and 125 samples from polyhaline San Francisco Bay. Index performance was evaluated by comparing index assessments of 35 sites to the best professional judgment of nine benthic experts. None of the individual indices performed as well as the average expert in ranking sample condition or evaluating whether benthic assemblages exhibited evidence of disturbance. However, several index combinations outperformed the average expert. When results from both habitats were combined, two four-index combinations and a three-index combination performed best. However, performance differences among several combinations were small enough that factors such as logistics can also become a consideration in index selection.

A combined science and management framework for developing regional monitoring objectives

Abstract Designing environmental monitoring programs to deal with widespread, subtle, and/or cumulative impacts on a regional basis is challenging. It requires a shift away from focusing primarily on individual point sources to a more regional perspective. It also necessitates involving scientists and managers together in a cooperative effort to establish priorities and articulate clear objectives. In our view, this objective‐setting task is neither a strictly scientific nor a strictly management activity. It depends on effective communication between scientists and managers but is confounded by differing perspectives, value systems, and behaviors. We present a conceptual framework to assist managers and scientists in this process. This is intended to structure such communication by helping to create a context that permits fruitful give‐and‐take between the two groups. We then describe a six‐part model for specifying the key elements of regional monitoring objectives.

Habitat-Related Benthic Macrofaunal Assemblages of Bays and Estuaries of the Western United States

Data from 7 coastwide and regional benthic surveys were combined and used to assess the number and distribution of estuarine benthic macrofaunal assemblages of the western United States. Q-mode cluster analysis was applied to 714 samples and site groupings were tested for differences in 4 habitat factors (latitude, salinity, sediment grain size, and depth). Eight macrofaunal assemblages, structured primarily by latitude, salinity, and sediment grain size, were identified: (A) Puget Sound fine sediment, (B) Puget Sound coarse sediment, (C) southern California marine bays, (D) polyhaline central San Francisco Bay, (E) shallow estuaries and wetlands, (F) saline very coarse sediment, (G) mesohaline San Francisco Bay, and (H) limnetic and oligohaline. The Puget Sound, southern California, and San Francisco Bay assemblages were geographically distinct, while Assemblages E, F and H were distributed widely along the entire coast. A second Q-mode cluster analysis was conducted after adding replicate samples that were available from some of the sites and temporal replicates that were available for sites that were sampled in successive years. Variabilities due to small spatial scale habitat heterogeneity and temporal change were both low in Puget Sound, but temporal variability was high in the San Francisco estuary where large fluctuations in freshwater inputs and salinity among years leads to spatial relocation of the assemblages.

Contaminants in sediments of two nearshore basin slopes off Southern California

Abstract Sediment grain-size, organic material, and contaminant concentrations (trace metals and chlorinated hydrocarbons) were measured on the slopes (300–625 m) of two nearshore basins off southern California as part of a baseline study for a proposed deep water sludge out-fall. With increased depth, sediments generally became finer and increased in organic material and contaminant (except Pb and PCB) concentrations. However, due to the short slope depth gradient sampled, contaminant concentrations (except Ni and Zn) were usually not significantly correlated with depth, grain-size, or organic material. Comparisons of the sediment parameters between the two slope areas using ANOVA showed that the two areas were significantly different and that some of the parameters changed over time.

Benthic macrofaunal assemblages of the San Francisco Estuary and Delta, USA

The spatial and temporal distribution of macrobenthic assemblages in the San Francisco Estuary and Sacramento–San Joaquin River Delta were identified using hierarchical cluster analysis of 501 samples collected between 1994 and 2008. Five benthic assemblages were identified that were distributed primarily along the salinity gradient: (1) a polyhaline assemblage that inhabits the Central Bay, (2) a mesohaline assemblage that inhabits South Bay and San Pablo Bay, (3) a low-diversity oligohaline assemblage primarily in Suisun Bay, (4) a low-diversity sand assemblage that occurs at various locations throughout the Estuary, and (5) a tidal freshwater assemblage in the Delta. Most sites were classified within the same assemblage in different seasons and years, but a few sites switched assemblage designations in response to seasonal changes in salinity from freshwater inflows.

Characteristics of a Recreational Fishery for Hawaiian Spiny Lobsters at the Midway Islands

Abstract A small-scale recreational fishery by divers for spiny lobsters Panulirus marginatus at the Midway Islands in the Hawaiian Archipelago was studied in the absence of commercial fishing. Data were collected on biometric and reproductive information during April 1973-May 1978 and on catch and effort during May 1975-November 1978. Lobsters in the recreational harvest ranged from 5.4 to 15.9 cm carapace length (CL) and were fully recruited by 9 cm CL. Overall, the sexes were equally represented in the catch. Reproduction was seasonal and occurred primarily during late spring and summer (May-August). The level of fishing effort exerted was insufficient to measurably depress stock abundance and a greater sustained yield seems possible. The mean monthly catch per unit effort was 2.8 (±1.0 SD) lobsters/diver-trip. Fifty-six percent of the divers in the fishery made only a single trip, whereas divers making multiple trips accounted for 86% of the total effort. The information obtained at Midway provides a ...