Bruno F. Melo

Cryptic species in the Neotropical fish genus Curimatopsis (Teleostei, Characiformes)

Detritivores of the fish family Curimatidae are assigned to eight genera, one of which, the Curimatopsis, with only five species, is the least speciose genus and sister to other seven genera in the family. Ongoing morphological investigations reveal, however, the likely existence of additional species. In this study, fifty‐one specimens of Curimatopsis from multiple rivers of the Amazon, Paraguay and Suriname drainages were identified morphologically according to the present species concepts and then barcoded using the universal cytochrome c oxidase subunit I (COI) mitochondrial marker. Species delimitation analyses were conducted using Bayesian methods through the general mixed Yule‐coalescent analysis combined with conventional likelihood, genetic distance and haplotypic diversity approaches. We found eleven well‐supported clusters that represent four of the named species and seven cryptic, undescribed species of Curimatopsis. Our results show a clear delimitation of species boundaries constrained by distinct Amazonian river ecotones that may have promoted intrageneric lineage diversification. This is the first of a series of genetic studies applicable to future taxonomic, phylogenetic and evolutionary studies across the Curimatidae.

Molecular phylogenetics of the Neotropical fish family Prochilodontidae (Teleostei: Characiformes).

Migratory detritivores of the characiform family Prochilodontidae occur throughout the freshwaters of much of South America. Prochilodontids often form massive populations and many species achieve substantial body sizes; a combination that makes them one of the most commercially important fish groups on the continent. Their economic significance notwithstanding, prochilodontids have never been the subject of a comprehensive molecular phylogenetic analysis. Using three mitochondrial and three nuclear loci spanning all prochilodontid species, we generated a novel phylogenetic hypothesis for the family. Our results strongly support monophyly of the family and the three included genera. A novel, highly supported placement of Ichthyoelephas sister to the clade containing Prochilodus and Semaprochilodus diverges from a previous morphological hypothesis. Most previously hypothesized interspecific relationships are corroborated and some longstanding polytomies within Prochilodus and Semaprochilodus are resolved. The morphologically similar P. brevis, P. lacustris, P. nigricans and P. rubrotaeniatus are embedded within what is herein designated as the P. nigricans group. Species limits and distributions of these species are problematic and the group clearly merits taxonomic revision.

Revision of the South American genus Tetragonopterus Cuvier, 1816 (Teleostei: Characidae) with description of four new species

The systematics of the characid genus Tetragonopterus is reviewed based on morphological and molecular data of specimens from its entire geographical range encompassing all major South American river drainages from Orinoco basin southward to the La Plata basin. Eight previously described species (T. anostomus, T. araguaiensis, T. argenteus, T. carvalhoi, T. chalceus, T. denticulatus, T. georgiae n. comb., and T. rarus) are recognized as valid, four of which are redescribed (T. argenteus, T. chalceus, T. georgiae, and T. rarus), and four new species from the Brazilian Shield in the Amazon and São Francisco river basins are herein described. We also provide evidence for the reallocation of Moenkhausia georgiae into Tetragonopterus and recognize T. akamai as junior synonym of T. anostomus. DNA barcodes of Tetragonopterus revealed genetic support for each recognized species and provided valuable population-level information within T. argenteus, T. chalceus, T. georgiae, and T. rarus.

Cyphocharax boiadeiro , a new species from the upper rio Araguaia, Amazon basin, Brazil (Characiformes: Curimatidae)

Cyphocharax boiadeiro, new species, is described from the upper rio Araguaia, a tributary of the Amazon basin in central Brazil. The new species is readily distinguished from its congeners by the presence of a distinct longitudinal dark stripe from supracleithrum to the caudal peduncle and by a combination of morphometric, meristic, and pigmentation features. Morphological characters supporting putative subunits of Cyphocharax are also discussed.

Data on the multilocus molecular phylogenies of the Neotropical fish family Prochilodontidae (Teleostei: Characiformes)

The data presented herein support the article “Molecular phylogenetics of the Neotropical fish family Prochilodontidae (Teleostei: Characiformes)” (B.F. Melo, B.L. Sidlauskas, B.W. Frable, K. Hoekzema, R.P. Vari, C. Oliveira, 2016) [1], which inferred phylogenetic relationships of the prochilodontids from an alignment of three mitochondrial and three nuclear loci (5279 bp) for all 21 recognized prochilodontid species and 22 related species. Herein, we provide primer sequences, museum voucher information and GenBank accession numbers. Additionally, we more fully describe the maximum-likelihood and Bayesian phylogenetic analyses of the concatenated dataset, detail the Bayesian species tree analysis, and provide the maximum likelihood topologies congruent with prior morphological hypotheses that were compared with the unconstrained tree using Shimodaira–Hasegawa tests.

Molecular phylogenetics of Neotropical detritivorous fishes of the family Curimatidae (Teleostei: Characiformes)

Curimatidae, the fourth largest family of detritivorous Neotropical characiform fishes, encompasses eight extant genera and over 110 species dwelling in diverse freshwater habitats from Costa Rica to Argentina. Extensive phylogenetic analyses of soft anatomy and osteology provided evidence for intergeneric and most interspecific relationships, and formed the basis of curimatid taxonomy for nearly 40 years. However, that morphological phylogeny demonstrated incomplete phylogenetic resolution at various scales and has never been tested with extensive molecular data. Herein, we infer molecular phylogenies spanning ∼70% of the known species diversity using three nuclear and three mitochondrial loci. Topologies from concatenated likelihood and Bayesian analyses and coalescent Bayesian species trees agree broadly with each other, and with the prior morphological hypothesis in many, but not all respects. All molecular analyses support the monophyly of Curimatidae and of six of its constituent genera, and agree on the placement of Curimatopsis as sister to all other curimatids. DNA-based intergeneric relationships differ substantially from prior morphological hypotheses by placing Curimata sister to Potamorhina and Psectrogaster sister to Pseudocurimata, rather than in a ladderized arrangement. Our results also resolve a major uncertainty in the morphological tree by revealing Cyphocharax, a genus for which no anatomical synapomorphy has ever been proposed, as a paraphyletic assemblage containing a monophyletic Steindachnerina and a polyphyletic Curimatella. Overall, the phylogeny expands substantially our understanding of the morphology, phylogenetics and evolution of the Curimatidae, and will guide future intrageneric studies by improving precision in the choice of comparative taxa.

A new species of Curimatopsis Steindachner (Characiformes: Curimatidae) from the Rio Nhamundá, Amazon basin

A new species of Curimatopsis is described from the Rio Nhamundá, Amazon basin in northern Brazil. The new species is distinguished from congeners by the presence of a distinctive concentration of dark pigmentation over the entire lower lobe of the caudal fin, reticulate pattern of body pigmentation, lower jaw longer than and overlapping the anterior portion of the upper jaw, crescent-shaped posterior nostril and by morphometric and meristic data. Comments on the phylogenetic position of the new species within Curimatopsis are also provided.

Little Divergence Among Mitochondrial Lineages of Prochilodus (Teleostei, Characiformes)

Evidence that migration prevents population structure among Neotropical characiform fishes has been reported recently but the effects upon species diversification remain unclear. Migratory species of Prochilodus have complex species boundaries and intrincate taxonomy representing a good model to address such questions. Here, we analyzed 147 specimens through barcode sequences covering all species of Prochilodus across a broad geographic area of South America. Species delimitation and population genetic methods revealed very little genetic divergence among mitochondrial lineages suggesting that extensive gene flow resulted likely from the highly migratory behavior, natural hybridization or recent radiation prevent accumulation of genetic disparity among lineages. Our results clearly delimit eight genetic lineages in which four of them contain a single species and four contain more than one morphologically problematic taxon including a trans-Andean species pair and species of the P. nigricans group. Information about biogeographic distribution of haplotypes presented here might contribute to further research on the population genetics and taxonomy of Prochilodus.

New species of Parotocinclus (Siluriformes: Loricariidae) from coastal drainages of Rio de Janeiro, southeastern Brazil

A new species of Parotocinclus is described from tributaries of rio São João, an Atlantic coastal river of Rio de Janeiro, southeastern Brazil. The new species is distinguished from its congeners by the possession of a triangular patch of dark pigmentation on the anterior portion of the dorsal-fin base, a fully developed adipose fin, complete exposure of the ventral surface of the pectoral girdle, and a distinctive pigmentation pattern of the caudal fin. The caudal fin has a hyaline background with a large black blotch covering its anterior portion, tapering irregularly through distal portions of the ventral lobe with a hyaline rounded area, and a small patch of dark pigmentation on distal portions of the dorsal lobe.

Species delimitation in Neotropical fishes of the genus Characidium (Teleostei, Characiformes)

Neotropical darters of the genus Characidium have a complex systematic history with several examples of sympatry throughout their distribution range in Neotropical freshwaters. Although various species within the genus have been used as models to investigate chromosomal evolution and biogeography, species boundaries and relationships still remain uncertain. Here, we use mitochondrial DNA sequences to perform species delimitation analyses within Characidium and test previous hypotheses of species richness within the Characidium zebra complex and among sympatric morphotypes of C. alipioi. Results indicate high genetic distances within tested species complexes and revealed the presence of strongly supported lineages such as the large C. lauroi group from southeastern Brazil. This suggests that the evolutionary history of these groups may be correlated with biogeographic history. Analyses also reveal that three geographically isolated populations of C. zebra represent a single species, leading us to reject prior hypothesis of multiple species. Species delimitation using mitochondrial data strongly supports the presence of two sympatric species within C. alipioi in southeastern Brazil despite limited morphological variation and conserved chromosomal patterns. These results provide a framework to further the study of systematics and evolution within Characidium.