Burhan Sen

Airborne Fungi and Actinomycetes Concentrations in the Air of Eskisehir City (Turkey)

The present study investigated the isolation and identification of airborne fungi from three different urban stations located in Eskisehir (Turkey). Air samples were taken by exposing a Petri dish with Rose-Bengal streptomycin agar medium for 15 min and after incubation the number of growing colonies was counted. The sampling procedure for fungi was performed 35 times at the research stations weekly between March and November 2001. A total of 2518 fungal and 465 actinomycetes colonies were counted on 420 Petri plates over a nine-month period. In total, some 20 mould species belonging to 12 genera were isolated. Alternaria alternata, Cladosporium cladosporioides and Scopulariopsis brevicaulis were the most abundant species in the study area (13.66, 5.80 and 5.50% of the total, respectively). Relationships between fungal spore numbers, aerosol air pollutants (that is the particulate matter in the air) and sulphur dioxide together with the meteorological conditions were examined using statistical analysis. Number of fungi and actinomycetes were tested by multivariate analysis (MANOVA) according to the areas and months. Fungal numbers were nonsignificant according to the areas and months (p > 0.05), but the number of actinomycetes recorded was significant (p < 0.01).

Indoor airborne fungal spores and home characteristics in asthmatic children from Edirne region of Turkey

Abstract Background The contribution of indoor fungal exposure to childhood asthma is not completely clear Objective To investigate airborne fungal flora within the homes of asthmatic and control children, and to assess the influence of housing characteristics regarding indoor fungi Methods Forty-seven atopic asthmatic and 23 nonatopic control children were studied. Allergen sensitivity was determined by skin prick tests. A thorough assessment, using a questionnaire and inspection surveys, was carried out. Home visits were made between October 2000 and February 2001. Samples of airborne fungal spores were collected from four rooms by the “open Petri dish” method. Indoor temperature and humidity were measured Results The total indoor fungal colony counts from the living rooms and bedrooms were significantly higher in the asthma group than in controls (p = .012 and p = .003, respectively). The most commonly isolated genus was Cladosporium. Twelve of the asthmatic patients (25.53 %) were found to be sensitive to fungal allergens. The factors found to be associated with indoor fungal growth in logistic regression were visible fungal patches in the bathrooms [(odds ratio (OR) = 5.75; 95 % CI 1.19 to 27.70)], and the age of the house [OR = 4.24; 95% CI 1.34 to 13.45]. Total fungal colony numbers did not correlate with indoor temperature or humidity Conclusion Fungal colony numbers were higher in the homes of asthmatic children than in those of controls. Therefore, indoor fungal exposure may contribute to childhood asthma. Bathrooms were the main source of fungal propagules. Old houses were more prone to fungal growth

Mycological contamination in dental unit waterlines in Istanbul, Turkey

Studies on dental units (DUs) are conducted either for the prevention or the reduction of the density of bacterial contamination in dental unit waterlines (DUWLs). However, the existence of fungi in the these systems requires more attention. During dental treatment, direct contact with water contaminated with fungi such as Candida, Aspergillus, or inhalation of aerosols from high-speed drill may cause various respiratory infections, such as asthma, allergies, and wounds on mucose membranes, especially on immunocompromised patients and dentists. The aims of this study are to investigate the number and colonization of fungi in DUWLs in the city of Istanbul, Turkey. Water samples were collected from air-water syringes, high-speed drills, and inlet waters from 41 DUs. The aerobic mesophilic fungi count in high- speed drills was higher than inlet waters and air-water syringes. Non-sporulating fungi were found in 7 DUs. The isolated fungi were identified as Penicillium waksmanii, Cladosporium spp., Penicillium spp., Candida famata, Cryptococcus laurentii, Candida guilliermondii, Penicillium verrucosum, Aspergillus pseudoglaucus, Penicillium decumbens, and Acremonium sp. Some of these fungal genera are known as opportunistic pathogens that led to respiratory diseases such as allergic rhinits. This study shows the importance of regular control of mycological contamination on water at DUs.

A NOVEL BIOSENSOR BASED ON Lactobacillus acidophilus FOR DETERMINATION OF PHENOLIC COMPOUNDS IN MILK PRODUCTS AND WASTEWATER

Different branches of industry need to use phenolic compounds (PCs) in their production, so determination of PCs sensitively, accurately, rapidly, and economically is very important. For the sensitive determination of PCs, some biosensors based on pure polyphenol oxidase, plant tissu,e and microorganisms were developed before. But there has been no study to develop a microbial phenolic compounds biosensor based on Lactobacillus species, which contain polyphenol oxidase enzyme. In this study, we used different forms of Lactobacillus species as enzyme sources of biosensor and compared biosensor performances of these forms for determination of PCs. For this purpose, we used lyophilized Lactobacillus cells (containing L. bulgaricus, L. acidophilus, Streptococcus thermophilus), pure L. acidophilus, pure L. bulgaricus, and L. acidophilus- and L. bulgaricus adapted to catechol in Lactobacilli MRS Broth. The most suitable form was determined and optimization studies of the biosensor were carried out by using this form. For preparing the bioactive layer of the biosensor, the Lactobacillus cells were immobilized in gelatin by using glutaraldehyde. In the study, we used catechol as a substrate. Phenolic compound determination is based on the assay of the differences on the respiration activity of the cells on the oxygen meter in the absence and the presence of catechol. The microbial biosensor response depends directly on catechol concentration between 0.5 and 5.0 mM with 18 min response time. In the optimization studies of the microbial biosensor the most suitable microorganism amount was found to be 10 mg, and also phosphate buffer (pH 8.0; 50 mM) and 37.5°C were obtained as the optimum working conditions. In the characterization studies of the microbial biosensor some parameters such as substrate specificity on the biosensor response and operational and storage stability were examine. Furthermore, the determination of PC levels in synthetic wastewater, industrial wastewater, and milk products was investigated by using the developed biosensor under optimum conditions.

Indoor airborne fungal pollution in newborn units in Turkey

Pathogenic and/or opportunistic fungal species are major causes of nosocomial infections, especially in controlled environments where immunocompromised patients are hospitalized. Indoor fungal contamination in hospital air is associated with a wide range of adverse health effects. Regular determination of fungal spore counts in controlled hospital environments may help reduce the risk of fungal infections. Because infants have inchoate immune systems, they are given immunocompromised patient status. The aim of the present study was to evaluate culturable airborne fungi in the air of hospital newborn units in the Thrace, Marmara, Aegean, and Central Anatolia regions of Turkey. A total of 108 air samples were collected seasonally from newborn units in July 2012, October 2012, January 2013, and April 2013 by using an air sampler and dichloran 18% glycerol agar (DG18) as isolation media. We obtained 2593 fungal colonies comprising 370 fungal isolates representing 109 species of 28 genera, which were identified through multi-loci gene sequencing. Penicillium, Aspergillus, Cladosporium, Talaromyces, and Alternaria were the most abundant genera identified (35.14, 25.40, 17.57, 2.70, and 6.22% of the total, respectively).

Saf kültür olarak stoklanmış bazı mikrofungusların ITS, β-tubulin ve Aktin gen dizilerine göre moleküler tanısı

Bu calismada, Trakya Universitesi Fen Fakultesi Biyoloji Bolumu Mikrobiyoloji laboratuvarinda saf kultur olarak stoklanmis bununla beraber; cins veya tur duzeyinde morfolojik olarak teshis edilemeyen bazi mikrofunguslar molekuler olarak tanimlanmistir. Calismada kullanilan mikrofunguslar daha once tur duzeyinde morfolojik olarak tanimlanamamis izolatlardan olusmustur. Ornekler, MEA besiyerine ekilip 25oC’de 7 gun inkube edilmistir. Besiyerinden alinan ornekler, analiz yapilana kadar -20oC’de saklanmistir. DNA izolasyonu icin funguslara ozel, kimyasal (SDS ve CTAB), biyokimyasal (proteinazK vb.) ve fiziksel (0.1 mm capli boncuklar) parcalama yontemlerini bir arada kullanan DNA izolasyon kitleri kullanilmistir. Cesitlilik calismalari, PCR tabanli fungal cesitlilik calisma kitleri ile yapilmistir. Tum izolatlar icin ITS gen dizisi kullanilmis, cinse bagli olarak β-tubulin ve Actin gen dizilimlerini hedeflenmistir. PCR ile cogaltilan DNA dizilimleri “Sanger Sequencing Yontemi” ile dizilenmistir. Elde edilen dizilerin hangi organizmalara ait oldugu NCBI ve EBI gibi uluslararasi nukleik asit data bankalarinda mevcut dizilimlerle, elde edilen filotiplerin dizilimleri karsilastirilarak belirlenmistir. Toplam 61 mikrofungus ornegi, cins duzeyinde 3 gruba (A,B,C) ayrilmis olup, gruplara gore ilgili gen bolgeleri molekuler teshis icin analiz edilmistir. 3 grup icin hem ilgili gen bolgeleri hem de ITS bolgeleri baz alinarak yapilan molekuler analizler sonucunda, 6 ornegin tur teshisi yapilamamis, 56 tur molekuler duzeyde teshis edilmistir.