C. J. Tymczak

Time-reversible Born-Oppenheimer molecular dynamics.

We present a time-reversible Born-Oppenheimer molecular dynamics scheme, based on self-consistent Hartree-Fock or density functional theory, where both the nuclear and the electronic degrees of freedom are propagated in time. We show how a time-reversible adiabatic propagation of the electronic degrees of freedom is possible despite the nonlinearity and incompleteness of the self-consistent field procedure. With a time-reversible lossless propagation the simulated dynamics is stabilized with respect to a systematic long-term energy drift and the number of self-consistency cycles can be kept low thanks to a good initial guess given from the electronic propagation. The proposed molecular dynamics scheme therefore combines a low computational cost with a physically correct time-reversible representation, which preserves a detailed balance between propagation forwards and backwards in time.

Trace resetting density matrix purification in O(N) self-consistent-field theory

A new approach to linear scaling construction of the density matrix is proposed, based on trace resetting purification of an effective Hamiltonian. Trace resetting is related to the trace preserving canonical purification scheme of Palser and Manolopoulos [Phys. Rev. B 58, 12704 (1999)] in that they both work with a predefined occupation number and do not require adjustment or prior knowledge of the chemical potential. In the trace resetting approach, trace conservation is not strictly enforced, allowing greater flexibility in the choice of purification polynomial and improved performance for Hamiltonian systems with high or low filling. However, optimal polynomials may in some cases admit unstable solutions, requiring a resetting mechanism to bring the solution back into the domain of convergent purification. A quartic trace resetting method is developed, along with analysis of stability and error accumulation due to incomplete sparse-matrix methods that employ a threshold τ to achieve sparsity. It is ar...

Time-reversible ab initio molecular dynamics

Time-reversible ab initio molecular dynamics based on a lossless multichannel decomposition for the integration of the electronic degrees of freedom [Phys. Rev. Lett. 97, 123001 (2006)] is explored. The authors present a lossless time-reversible density matrix molecular dynamics scheme. This approach often allows for stable Hartree-Fock simulations using only one single self-consistent field cycle per time step. They also present a generalization, introducing an additional forcing term, that in a special case includes a hybrid Lagrangian, i.e., Car-Parrinello-type, method, which can systematically be constrained to the Born-Oppenheimer potential energy surface by using an increasing number of self-consistency cycles in the nuclear force calculations. Furthermore, in analog to the reversible and symplectic leapfrog or velocity Verlet schemes, where not only the position but also the velocity is propagated, the authors propose a Verlet-type density velocity formalism for time-reversible Born-Oppenheimer molecular dynamics.

Linear scaling computation of the Fock matrix. VII. Parallel computation of the Coulomb matrix

We present parallelization of a quantum-chemical tree-code for linear scaling computation of the Coulomb matrix. Equal time partition is used to load balance computation of the Coulomb matrix. Equal time partition is a measurement based algorithm for domain decomposition that exploits small variation of the density between self-consistent-field cycles to achieve load balance. Efficiency of the equal time partition is illustrated by several tests involving both finite and periodic systems. It is found that equal time partition is able to deliver 91%-98% efficiency with 128 processors in the most time consuming part of the Coulomb matrix calculation. The current parallel quantum chemical tree code is able to deliver 63%-81% overall efficiency on 128 processors with fine grained parallelism (less than two heavy atoms per processor).

Linear scaling computation of the fock matrix. VIII. Periodic boundaries for exact exchange at the Γ point

A translationally invariant formulation of the Hartree-Fock (HF) Gamma-point approximation is presented. This formulation is achieved through introduction of the minimum image convention (MIC) at the level of primitive two-electron integrals, and implemented in a periodic version of the ONX algorithm [E. Schwegler, M. Challacombe, and M. Head-Gordon, J. Chem. Phys. 106, 9708 (1997)] for linear scaling computation of the exchange matrix. Convergence of the HF-MIC Gamma-point model to the HF k-space limit is demonstrated for fully periodic magnesium oxide, ice, and diamond. Computation of the diamond lattice constant using the HF-MIC model together with the hybrid PBE0 density functional [C. Adamo, M. Cossi, and V. Barone, THEOCHEM 493, 145 (1999)] yields a0=3.569 A with the 6-21G* basis set and a 3x3x3 supercell. Linear scaling computation of the HF-MIC exchange matrix is demonstrated for diamond and ice in the condensed phase.

Linear scaling computation of the Fock matrix. VII. Periodic density functional theory at the Γ point

Linear scaling quantum chemical methods for density functional theory are extended to the condensed phase at the Gamma point. For the two-electron Coulomb matrix, this is achieved with a tree-code algorithm for fast Coulomb summation [M. Challacombe and E. Schwegler, J. Chem. Phys. 106, 5526 (1997)], together with multipole representation of the crystal field [M. Challacombe, C. White, and M. Head-Gordon, J. Chem. Phys. 107, 10131 (1997)]. A periodic version of the hierarchical cubature algorithm [M. Challacombe, J. Chem. Phys. 113, 10037 (2000)], which builds a telescoping adaptive grid for numerical integration of the exchange-correlation matrix, is shown to be efficient when the problem is posed as integration over the unit cell. Commonalities between the Coulomb and exchange-correlation algorithms are discussed, with an emphasis on achieving linear scaling through the use of modern data structures. With these developments, convergence of the Gamma-point supercell approximation to the k-space integration limit is demonstrated for MgO and NaCl. Linear scaling construction of the Fockian and control of error is demonstrated for RBLYP6-21G* diamond up to 512 atoms.

Theoretical N2 Hugoniot Using MondoSCF Density Functional Quantum Energies and a Very Efficient Monte Carlo Reweighting Scheme

A Monte Carlo reweighting scheme is used to calculate the Hugoniot of molecular N2 incorporating very accurate quantum energies. We first determine a reference potential fit to quantum calculations of the anisotropic pair interaction. Then the full many‐body energy is evaluated for uncorrelated configurations from an NPT Monte Carlo reference simulation at pressure P0 and temperature T0. Each configuration is then reweighted to correspond to the distribution of the full energy at values of P and T chosen to maximize the overlap of the two distributions. Because the configurations are uncorrelated, only a few configurations are needed to give a statistically accurate EOS at P and T. The quantum energy calculations are computer intensive, but tractable due to the linear scaling of the MondoSCF density functional code. The PBE0 density functional is used with a 6–31g** basis set, shown to be convergent in the relevant energy differences. The resulting Hugoniot is in excellent agreement with Hugoniot data up ...

Energy gradients with respect to atomic positions and cell parameters for the Kohn-Sham density-functional theory at the Γ point

The application of theoretical methods based on density-functional theory is known to provide atomic and cell parameters in very good agreement with experimental values. Recently, construction of the exact Hartree-Fock exchange gradients with respect to atomic positions and cell parameters within the Gamma-point approximation has been introduced. In this article, the formalism is extended to the evaluation of analytical Gamma-point density-functional atomic and cell gradients. The infinite Coulomb summation is solved with an effective periodic summation of multipole tensors. While the evaluation of Coulomb and exchange-correlation gradients with respect to atomic positions are similar to those in the gas phase limit, the gradients with respect to cell parameters needs to be treated with some care. The derivative of the periodic multipole interaction tensor needs to be carefully handled in both direct and reciprocal space and the exchange-correlation energy derivative leads to a surface term that has its origin in derivatives of the integration limits that depend on the cell. As an illustration, the analytical gradients have been used in conjunction with the QUICCA algorithm to optimize one-dimensional and three-dimensional periodic systems at the density-functional theory and hybrid Hartree-Fock/density-functional theory levels. We also report the full relaxation of forsterite supercells at the B3LYP level of theory.