C. S. Baker

Molecular genetic identification of southern hemisphere beaked whales (Cetacea: Ziphiidae)

To assist in the species‐level identification of stranded and hunted beaked whales, we compiled a database of ‘reference’ sequences from the mitochondrial DNA control region for 15 of the 20 described ziphiid species. Reference samples for eight species were obtained from stranded animals in New Zealand and South Australia. Sequences for a further seven species were obtained from a previously published report. This database was used to identify 20 ‘test’ samples obtained from incompletely documented strandings around New Zealand. Analyses showed that four of these ‘test’ specimens (20%) had initially been misidentified. These included two animals of particular interest: (i) a Blainville’s beaked whale (Mesoplodon densirostris), the first record of this species in New Zealand waters; and, (ii) a juvenile Andrews′ beaked whale (Mesoplodon bowdoini), a species known from just over 20 strandings worldwide. A published sequence from a beaked whale product purchased in the Republic of Korea was identified as a Cuvier’s beaked whale (Ziphius cavirostris). Levels of intra‐ and interspecific variation were compared to determine the potential for misidentification when the database or taxonomy is incomplete. Intraspecific variation was generally <2%, and interspecific divergence was generally >4.7%. Exceptions were within‐species variation in Hyperoodon planifrons, southern bottlenosed whale (4.12%), which exceeded the variation between the two species of Berardius (3.78%), and variation between the two specimens assigned to M. hectori, Hector’s beaked whale (7.14%). The latter case appears to be an error in species identification, and could represent the discovery of a new species of beaked whale.

Conservation status of New Zealand marine mammals (suborders Cetacea and Pinnipedia), 2009.

Abstract The conservation status of New Zealand (NZ) marine mammals (suborders Cetacea and Pinnipedia) is reappraised using the 2008 version of the NZ Threat Classification System. The list comprises 56 taxa (named species or subspecies, and as yet unnamed forms or types) in the following categories: Threatened—eight taxa (five Nationally Critical and three Nationally Endangered); Vagrant—six taxa; Migrant—20 taxa; and Data Deficient—13 taxa. A further nine taxa are listed as Not Threatened. Relative to the previous listing, the threat status of two species worsened: the NZ sea lion (Phocarctos hookeri) was uplisted to Nationally Critical and the bottlenose dolphin (Tursiops truncatus) was uplisted to Nationally Endangered. No species was considered to have an improved status. With the uplisting of the NZ sea lion and the continued listing of the Hectors dolphin (Cephalorhynchus hectori hectori) as Endangered and Mauis dolphin (C. hectori maui) as Nationally Critical, all three endemic NZ marine mammals are now considered threatened with extinction. We considered future research or management actions that would allow the downlisting of the eight taxa currently listed as Threatened.

Origin and radiation of Southern Hemisphere coastal dolphins (genus Cephalorhynchus)

The genus Cephalorhynchus (Gray 1846) consists of four species of small coastal dolphins distributed in cool temperate waters around the Southern Hemisphere. Each species is sympatric with other members of the subfamily Lissodelphininae but widely separated from other congeners. To describe the origin and radiation of these species, we examined 442 bp of mitochondrial DNA control region sequences of 307 individuals from the genus Cephalorhynchus and compared these to sequences from other members of the subfamily Lissodelphininae. We investigate the hypotheses that Cephalorhynchus is a monophyletic genus or, alternatively, that the four species have arisen separately from pelagic Lissodelphine species and have converged morphologically. Our results support the monophyly of Cephalorhynchus within the Lissodelphininae and a pattern of radiation by colonization. We confirm a pattern of shallow but diagnosable species clades with Heaviside’s dolphin as the basal branch. We further examine the monophyly of maternal haplotypes represented by our large population sample for each species. Based on this phylogeographic pattern, we propose that Cephalorhynchus originated in the waters of South Africa and, following the West Wind Drift, colonized New Zealand and then South America. The Chilean and Commerson’s dolphins then speciated along the two coasts of South America, during the glaciation of Tierra del Fuego. Secondary radiations resulted in genetically isolated populations for both the Kerguelen Island Commerson’s dolphin and the North Island Hector’s dolphin. Our results suggest that coastal, depth‐limited odontocetes are prone to population fragmentation, isolation and occasionally long‐distance movements, perhaps following periods of climatic change.

Short-term reactions and long-term responses of bottlenose dolphins (Tursiops truncatus) to remote biopsy sampling

We analyse short-term individual and group behavioural reactions and long-term individual responses of bottlenose dolphins (Tursiops truncatus) in New Zealand to remote skin biopsy sampling. The biopsy system employed uses a small stainless steel tip (5-mm diameter, 9-mm length) mounted on a lightweight polycarbonate projectile, fired from a modified veterinary rifle with adjustable pressure. Individual and group behavioural reactions were scored on a 5-point scale from 0 (no reaction) to 5 (strenuous reaction). A total of 187 individual and 145 group behavioural reactions were recorded from the Bay of Islands subpopulation, while 38 individual and 39 group behavioural reactions were recorded from the Doubtful Sound subpopulation. Short-term reactions (<1 min duration) were ranked from low or mild (levels 1–2), as evidenced by startle responses, to moderate (level 3), as evidenced by multiple leaps of the sampled individual. Most attempts (99%) resulted in only mild reactions with only two attempts resulting in moderate reactions. There were no strenuous reactions by individuals or groups and no significant differences in behavioural reactions between the two subpopulations. Analyses of resighting rates and capture probabilities based on individual identification records for 40 of the biopsied dolphins showed no evidence of long-term avoidance responses. Wound healing was documented in for 10 dolphins across periods of 3 days to 7 months. Results reported here agree with previous findings showing that remote biopsy sampling causes only short-term reactions in both the targeted individual and its group.

Bucking the trend: genetic analysis reveals high diversity, large population size and low differentiation in a deep ocean cetacean

Understanding the genetic structure of a population is essential to its conservation and management. We report the level of genetic diversity and determine the population structure of a cryptic deep ocean cetacean, the Gray’s beaked whale (Mesoplodon grayi). We analysed 530 bp of mitochondrial control region and 12 microsatellite loci from 94 individuals stranded around New Zealand and Australia. The samples cover a large area of the species distribution (~6000 km) and were collected over a 22-year period. We show high genetic diversity (h=0.933–0.987, π=0.763–0.996% and Rs=4.22–4.37, He=0.624–0.675), and, in contrast to other cetaceans, we found a complete lack of genetic structure in both maternally and biparentally inherited markers. The oceanic habitats around New Zealand are diverse with extremely deep waters, seamounts and submarine canyons that are suitable for Gray’s beaked whales and their prey. We propose that the abundance of this rich habitat has promoted genetic homogeneity in this species. Furthermore, it has been suggested that the lack of beaked whale sightings is the result of their low abundance, but this is in contrast to our estimates of female effective population size based on mitochondrial data. In conclusion, the high diversity and lack of genetic structure can be explained by a historically large population size, in combination with no known exploitation, few apparent behavioural barriers and abundant habitat.