Carl P. Qualls

Genetic and Morphological Variation Between Populations of the Pascagoula Map Turtle (Graptemys gibbonsi) in the Pearl and Pascagoula Rivers with Description of a New Species

Abstract Cryptic or undescribed species pose a major problem in conservation biology. Managing multiple unresolved taxa collectively as a single entity could precipitate the loss of unrecognized genetic variation and unique populations and, possibly, lead to extinction of undiscovered or unrecognized taxa. In contrast to other species in its clade, the Pascagoula map turtle (Graptemys gibbonsi), as currently recognized, is not confined to a single major river system (or a cluster formed by a major river and adjacent minor drainages) but occurs in two major river systems, the Pearl and Pascagoula Rivers. We analyzed G. gibbonsi samples from both rivers for the first time in a morphological and molecular assessment of the taxonomic status of this poorly studied species. We compared the extent of genetic differentiation (mitochondrial DNA; mtDNA) between G. gibbonsi populations with members within the pulchra clade and between Graptemys oculifera and Graptemys flavimaculata. We found significant carapace pattern variation and morphological differentiation between the Pearl and Pascagoula river samples of G. gibbonsi. Our mtDNA sequences showed greater genetic differentiation between G. gibbonsi samples from the Pearl and Pascagoula rivers than between two recognized and reciprocally sympatric species, G. oculifera (Pearl River) and G. flavimaculata (Pascagoula River), but revealed only a modest degree of differentiation when compared to other members of the pulchra clade. Based on the degree of differentiation in 1) morphology, 2) color patterns, and 3) mtDNA, in addition to their 4) allopatric distributions, we describe a new species from the Pearl River, restricting the species G. gibbonsi to the Pascagoula River.

Tula: Balancing Energy for Sensing and Communication in a Perpetual Mobile System

Due to advances in low power sensors, energy harvesting, and disruption tolerant networking, we can now build mobile systems that operate perpetually, sensing and streaming data directly to scientists. However, factors such as energy harvesting variability and unpredictable network connectivity make building robust and perpetual systems difficult. In this paper, we present a system, Tula, that balances sensing with data delivery, to allow perpetual and robust operation across highly dynamic and mobile networks. This balance is especially important in unpredictable environments; sensing more data than can be delivered by the network is not useful, while gathering less underutilizes the systems potential. Tula is decentralized, fair and automatically adapts across different mobility patterns. We evaluate Tula using mobility and energy traces from TurtleNet-a mobile sensor network we deployed to study Gopher tortoises-and publicly available traces from the UMass DieselNet testbed. Our evaluations show that Tula senses and delivers data at up to 85 percent of an optimal, oracular system that perfectly replicates data and has foreknowledge of future energy harvesting. We also demonstrate that Tula can be implemented on a small microcontroller with modest code, memory, and processing requirements.

Low Genetic Diversity in Several Gopher Tortoise (Gopherus polyphemus) Populations in the Desoto National Forest, Mississippi

Abstract Gopherus polyphemus has experienced severe population declines, especially in the western portion of its range. As a consequence, G. polyphemus may have experienced population bottlenecks that resulted in a decrease in genetic diversity and an accumulation of deleterious alleles. The importance of genetic diversity has been well-documented for several fitness parameters (e.g., survival, disease resistance, growth and developmental rates, and developmental instability). Western populations of G. polyphemus in south Mississippi (USA) have lower hatching success (16.7–48%) than that found in eastern populations (67–97%). Even under laboratory conditions, approximately 40% of the eggs still failed to hatch, suggesting that intrinsic (egg quality) factors may be affecting development. Using nine microsatellite loci, we genotyped individuals from four populations in south Mississippi and one eastern population (Fort Benning, GA) and compared several genetic diversity indices (e.g., allelic richness, expected heterozygosity, and percent polymorphic loci) with published data from populations in the eastern portion of the range, such as populations east of the Mobile and Tombigbee rivers. We found significantly lower genetic diversity in the four Mississippi populations than in the eastern populations. However, these findings only demonstrate that these populations have low genetic diversity, and establishing any causal relationship between low genetic diversity (or other intrinsic factors; e.g., female condition) and reduced reproductive success should be further investigated.

Seasonal Variation of Corticosterone Levels in Graptemys flavimaculata, an Imperiled Freshwater Turtle

Currently, little is known about the seasonal variation of corticosterone (CORT) levels, either baseline or stress response, within freshwater turtles. We conducted a seasonal CORT study with a species of freshwater turtle, Graptemys flavimaculata (Yellow-blotched Sawback; family Emydidae), that is endemic to the Pascagoula River system of southeastern Mississippi. Graptemys flavimaculata is commonly observed while basking on deadwood snags, with us using basking traps and dip nets as active capture methods. We caught both male (n  =  60) and female (n  =  49) turtles during the months of April–October during 2007 and 2008. Immediately after capture, we collected an initial blood sample, confined the turtle for 35 minutes, and then took a second blood sample. Competitive binding radioimmunoassays were done to determine CORT levels. Time zero CORT levels for both sexes were generally lower than previously reported levels for other turtle species, likely due to the trapping methods used. By time 35 min, CORT levels were significantly elevated relative to initial levels. We did not detect seasonal differences in time zero CORT levels for males or females. However, seasonal differences in time 35 CORT levels for males were detected, with higher levels observed during summer months (July, August) relative to spring (April) and fall (October) months. Seasonal differences were also detected in time 35 CORT levels of females, with lower levels observed during July (nesting season) relative to September. This study provides novel information and insight into the differences in seasonal physiological demands for this species, and aquatic turtle species in general, while also providing probable connections of physiology to seasonal life history events.

Morphological and Molecular Reassessment of Graptemys oculifera and Graptemys flavimaculata (Testudines: Emydidae)

Abstract The turtle genus Graptemys consists of 15 recognized taxa, distinguished largely on the basis of pigmentation pattern (i.e., soft tissue and shell), head size, and shell morphology. However, phylogenetic studies have shown limited sequence divergence within the genus and between Graptemys oculifera and Graptemys flavimaculata relative to most other members of the Emydidae. Graptemys oculifera of the Pearl River drainage and G. flavimaculata of the Pascagoula River drainage have been recognized as species since 1890 and 1954, respectively. However, the description of G. flavimaculata was based on a limited number of morphological characters. Several of these characters overlap between G. flavimaculata and G. oculifera, and no attempt was made to test for significant morphological differentiation. In this study, we reevaluated the morphological and genetic distinctiveness of G. flavimaculata and G. oculifera with (1) multivariate statistical analyses of 44 morphological characters and (2) 1,560 bp of sequence data from two mitochondrial genes (control region and ND4). The morphological and molecular analyses produced incongruent results. The principal components analysis ordinations separated the two species along a pigmentation gradient with G. flavimaculata having more yellow pigmentation than G. oculifera. Likewise, clustering analyses separated the specimens into two distinct groups with little overlap between the species. Our mitochondrial data supported previous findings of limited genetic differentiation between the two species. However, the results of our morphological analyses, in conjunction with recently published nuclear gene sequence data, support the continued recognition of the two species.

Basking Ecology of the Yellow-Blotched Sawback (Graptemys flavimaculata), an Imperiled Turtle Species of the Pascagoula River System, Mississippi, United States

Abstract Basking is an understudied aspect of turtle biology, especially considering how frequent and observable it is in some species. Researchers have suggested many physiological roles that basking likely fulfills in turtles. We documented seasonal basking behavior of the yellow-blotched sawback (Graptemys flavimaculata) on the Leaf River, a tributary of the Pascagoula River in southeastern Mississippi. We used binoculars and a spotting scope to determine G. flavimaculata individual- and population-level basking patterns throughout the main active months (April–October) and across the daily activity period; we also describe a new method to determine population basking percentage that may be useful for future aquatic turtle surveys. We found distinct differences in individual- and population-level basking behavior across months, sexes, and the daily activity period. We also documented differences in basking structures used between the sexes but found little correlation between population-level basking and several environmental temperature variables.

Distribution and habitat utilization of the gopher tortoise tick (Amblyomma tuberculatum) in Southern Mississippi.

Abstract The distribution of the gopher tortoise tick (Amblyomma tuberculatum) has been considered intrinsically linked to the distribution of its primary host, gopher tortoises (Gopherus polyphemus). However, the presence of G. polyphemus does not always equate to the presence of A. tuberculatum. There is a paucity of data on the ecology, habitat preferences, and distribution of A. tuberculatum. The goals of this study were to assess the distribution of A. tuberculatum in southern Mississippi and to determine which, if any, habitat parameters explain the distribution pattern of A. tuberculatum. During 2006–2007, we examined 13 G. polyphemus populations in southern Mississippi for the presence of A. tuberculatum, and we measured a suite of habitat parameters at each site. Only 23% of the G. polyphemus populations supported A. tuberculatum, suggesting a more restricted distribution than its host. The results of our multivariate analyses identified several habitat variables, e.g., depth of sand and percentage of sand in the topsoil and burrow apron, as being important in discriminating between sites with, and without, A. tuberculatum. Amblyomma tuberculatum was only found at sites with a mean sand depth of >100 cm and a mean percentage of topsoil and burrow apron sand composition >94.0 and 92.4, respectively. Thus, environmental factors, and not just its hosts range, seem to influence the distribution of A. tuberculatum.

Mitochondrial DNA Assessment of the Phylogeography of the Gopher Tortoise

Abstract Identifying geographic barriers that define genetic structure within a species is crucial in formulating an effective conservation plan. The identification of appropriate management units is critical for the protection and recovery of the gopher tortoise Gopherus polyphemus, which have declined across their entire range. Previous molecular work at various spatial scales has identified distinct population assemblages of the gopher tortoise. The goal of this study was to assess the genetic structure in gopher tortoises through a more complete sampling of the federally listed as threatened portion of the range and evaluate the extent of genetic isolation imposed by several potential geographic barriers. We sequenced a 712–base-pair portion of a mitochondrial gene (NADH dehydrogenase 4) for 322 individuals from 42 sites across the range. We found two major assemblages of haplotypes separated by a modest phylogenetic break (average uncorrected p distance  =  0.015). The biogeographic barrier that best...

Isolation and characterization of polymorphic microsatellite loci for the gopher tortoise (Gopherus polyphemus) and cross-amplification in other species of Gopherus

All members of the tortoise genus Gopherus have some degree of conservation concern. We report on the development of thirty-two new microsatellite loci for gopher tortoise, which were tested on 31 individuals from Ft. Benning, Georgia, USA. These loci possessed an average number of 5.09 alleles, an average observed heterozygosity of 0.574 and an average expected heterozygosity of 0.589. We also tested these loci in three congeners: Gopherus morafkai, Gopherus flavomarginatus and Gopherus berlandieri. The new microsatellite loci should prove useful in conservation efforts of Gopherus polyphemus and other Gopherus species.

A Comparison of Artificial Incubation and Natural Incubation Hatching Success of Gopher Tortoise (Gopherus polyphemus) Eggs In Southern Mississippi

Abstract Recent studies have found that Gopher Tortoise, Gopherus polyphemus, populations in southern Mississippi exhibit low recruitment, due in part to very low hatching success of their eggs. We sought to determine if the cause(s) of this low hatching success was related to egg quality (intrinsic factors), unsuitability of the nest environment (extrinsic factors), or a combination of the two. In 2003, hatching success was monitored simultaneously for eggs from the same clutches that were incubated in the laboratory and left to incubate in nests. A subset of randomly chosen eggs from each clutch was incubated in the laboratory under physical conditions that were known to be conducive to successful hatching to estimate the proportion of eggs that were capable of hatching in a controlled setting. Hatching success in the laboratory was compared with that of eggs incubated in natural nests to estimate the proportion of eggs that failed to hatch presumably from extrinsic factors. Laboratory hatching success was 58.8%, suggesting that roughly 40% of the eggs were intrinsically incapable of hatching even when incubated under controlled conditions. Hatching success in natural nests, 16.7%, was significantly lower than hatching success in the laboratory, suggesting that approximately 42.1% of eggs were capable of hatching but failed to hatch due to some extrinsic aspect(s) of the nest environment. Thus, the low hatching success of Gopher Tortoise eggs in southern Mississippi appears to be attributable to a combination of intrinsic (egg quality) and extrinsic (nest environment) factors.