Carlo A. Biagi

Growth of domesticated transgenic fish

A growth-hormone transgene boosts the size of wild but not domesticated trout.

Genetic mapping of Y-chromosomal DNA markers in Pacific salmon

Sex chromosomes in fish provide an intriguing view of how sex-determination mechanisms evolve in vertebrates. Many fish species with single-factor sex-determination systems do not have cytogenetically-distinguishable sex chromosomes, suggesting that few sex-specific sequences or chromosomal rearrangements are present and that sex-chromosome evolution is thus at an early stage. We describe experiments examining the linkage arrangement of a Y-chromosomal GH pseudogene (GH-Y) sequence in four species of salmon (chum, Oncorhynchus keta; pink, O. gorbuscha; coho, O. kisutch; chinook, O. tshawytscha). Phylogenetic analysis indicates that GH-Y arose early in Oncorhynchus evolution, after this genus had diverged from Salmo and Salvelinus. However, GH-Y has not been detected in some Oncorhynchus species (O. nerka, O. mykiss and O. clarki), consistent with this locus being deleted in some lineages. GH-Y is tightly linked genetically to the sex-determination locus on the Y chromosome and, in chinook salmon, to another Y-linked DNA marker OtY1. GH-Y is derived from an ancestral GH2 gene, but this latter functional GH locus is autosomal or pseudoautosomal. YY chinook salmon are viable and fertile, indicating the Y chromosome is not deficient of vital genetic functions present on the X chromosome, consistent with sex chromosomes that are in an early stage of divergence.

Reproductive Performance of Growth-Enhanced Transgenic Coho Salmon

Abstract The reproductive performances of growth-enhanced transgenic, hatchery, and cultured nontransgenic coho salmon Oncorhynchus kisutch were examined to investigate the consequences of reproductive interaction between growth hormone (GH)–transgenic fish and wild fish that may occur if transgenic salmon escaped into the natural environment. We examined adult morphological phenotypes, gamete quantity and quality, in vitro offspring production, courtship and spawning behavior, male competitive behavior, and transgene transmission to offspring. Transgenic, hatchery, and cultured nontransgenic fish required 2, 3, and 3 or 4 years, respectively, to reach sexual maturation. No differences in male gamete quantity or in vitro offspring production were observed. Transgenic females were more fecund than hatchery females but had smaller eggs. Fewer transgenic females spawned than hatchery females under experimental conditions, and transgenic females displayed consistently low levels of courtship behavior. In nonc...

Growth and Behavioral Consequences of Introgression of a Domesticated Aquaculture Genotype into a Native Strain of Coho Salmon

Abstract Selective breeding for enhanced growth in Pacific salmon Oncorhynchus spp. and other fish typically involves use of the largest mature individuals to breed for future generations of aquaculture broodstock. Owing to an altered selection regime, faster-growing fish may not be as adapted to the natural environment as wild fish. To increase understanding of the genetic changes underlying selection for enhanced growth that results in phenotypic differentiation of farmed from wild Pacific salmon, multiple generations of pure and hybrid families were generated for coho salmon O. kisutch, including pure farm (D), pure native (Ch; a natural strain propagated by wild and hatchery production), F1 and F2 hybrids, and F1 × wild backcross (BCh) genotypes. The family groups were reared in the laboratory under controlled conditions as (1) individual genotypic groups, (2) mixed groups under culture conditions, and (3) mixed groups under enriched (seminatural) conditions. The growth of the fish was tracked until s...

Growth and endocrine effect of growth hormone transgene dosage in diploid and triploid coho salmon

Growth-hormone transgene dosage, polyploidy, and parental effects on growth and endocrine responses have been assessed in coho salmon. Diploid fry with one or two transgene doses grew equally, whereas later-stage juvenile homozygotes grew faster than hemizygotes. In contrast, homozygotes and hemizygotes grew equally after smoltification, both in sea water and fresh water. Triploid transgenic salmon showed impaired growth which could not be fully overcome with additional transgene copies. Levels of muscle GH mRNA were elevated in two vs. one transgene dose diploids, but in triploids, a dosage effect was observed in muscle but not for animals carrying three transgene doses. IGF-I mRNA levels were elevated in transgenic vs. non-transgenic animals, but a dosage effect was not observed. Diploids and triploids with two transgenes had higher plasma GH levels than one-dose animals, but three-dose triploids showed no further elevation. Circulating IGF-I levels also showed a dosage effect in diploids, but not among any transgene doses in triploids. The present study reveals complex interactions among transgene dosage, maternal effects, developmental stage, and ploidy on growth and endocrine parameters in GH transgenic coho salmon. Specifically, GH transgenes do not always express nor have effects on growth that are directly correlated with the number of transgenes. Further, the reduced growth rate seen in triploid transgenic animals could not be fully overcome by increasing transgene dosage. The findings have relevance for understanding growth physiology, transgene function, and for environmental risk assessments that require understanding phenotypes of hemizygous vs. homozygous transgenic animals in populations.

Chinook salmon (Oncorhynchus tshawytscha) genome and transcriptome.

When unifying genomic resources among studies and comparing data between species, there is often no better resource than a genome sequence. Having a reference genome for the Chinook salmon (Oncorhynchus tshawytscha) will enable the extensive genomic resources available for Pacific salmon, Atlantic salmon, and rainbow trout to be leveraged when asking questions related to the Chinook salmon. The Chinook salmon’s wide distribution, long cultural impact, evolutionary history, substantial hatchery production, and recent wild-population decline make it an important research species. In this study, we sequenced and assembled the genome of a Chilliwack River Hatchery female Chinook salmon (gynogenetic and homozygous at all loci). With a reference genome sequence, new questions can be asked about the nature of this species, and its role in a rapidly changing world.