Carlos E. L. Ferreira

Community structure of fishes and habitat complexity on a tropical rocky shore

The relationship between the variables of reef fish community structure (fish richness, fish diversity and total number of fishes) and those of habitat complexity (total surface area, substratum diversity, topographic complexity, number of holes, percent cover of turf algae, zoanthids, millepores, massive corals, bare rock, encrusting calcareous algae, urchins, other sessile organisms and Sargassum) were examined on three different rocky shores (FA, FB and FT) at Arraial do Cabo, a tropical region located on Brazilian southeastern coast (23° S, 42° W). Fish abundance and vertical distribution were assessed by a visual census technique using strip transects. Percentage cover of benthic organisms and other substratum types were calculated by replicated transects using a chain laid down on the substratum. Topographic complexity was determined by the chain link method and number of holes were estimated by direct counts on replicated transects. More than 91 fishes belonging to 37 families were seen in all study sites during one year of visual census effort. FA and FB sites had similar fish community structure and habitat complexity characteristics, while FT showed different habitat characteristics and higher fish diversity and richness, plus total number of fishes. Vertical distribution of fishes along the rocky shores studied seemed to be predictable and was determined by factors such as feeding habits and behavior, availability of refuges and social interactions. The habitat variables that best explained the higher diversity and number of fishes observed in FT site were total surface area of rocky shores and the abundance of benthic sessile invertebrates; these conditions were typical of rocky shores more exposed to wave surge.

Reef fish community structure on coastal islands of the southeastern Brazil: the influence of exposure and benthic cover

Patterns of community structure in the marine environment are strongly influenced by population relationships to biotic and physical gradients. The aim of this work is to explore the relationships of tropical rocky reef fish assemblages to wave exposure and benthic coverage in a gradient of distance from the coast. The study was conducted on the Guarapari Islands, southeastern Brazilian coast. Fish were sampled by underwater visual census (166 transects) and benthic cover was estimated with quadrats (223 replicates). Two main kinds of habitats were found to be derived from the close interrelation between exposure and benthic coverage: (1) exposed areas subjected to major hydrodynamic forcing, and (2) sheltered or moderately exposed areas. The first group is associated with mid-water schooling species like planktivorous labrids and Chromis, piscivorous Caranx, as well as gregarious omnivores like Abudefduf and Diplodus. In terms of benthic composition, macroalgae and encrusting calcareous algae prevail in this high-energy habitat. The second group is characterized by site-attached and reef associated species like territorial pomacentrids, invertebrate feeders such as Halichoeres poeyi and Chaetodon striatus, and small cryptobenthic fishes (e.g. blenniids and labrisomids). Turf algae, zoanthids and massive corals dominate this environment. Environmental plasticity is also common with some genera showing high abundances in all habitats (e.g. Holocentrus, Haemulon, Acanthurus). Examples of the coupling of food availability and fish abundance were found. Planktivores, territorial herbivores, macroalgae browsers and spongivores were positively related with the abundance of their preferred food items along the exposure gradient. Within-family analyses of Pomacentridae and Labridae showed that niche partitioning is likely occurring and seems to be mediated by swimming ‘ability’ and associated feeding performance.

First Record of Invasive Lionfish (Pterois volitans) for the Brazilian Coast

The invasion of the northwestern Atlantic by the Indo-Pacific lionfish has developed extraordinarily fast, and is expected to cause one of the most negative ecological impacts among all marine invasions. In less than 30 years, lionfish have dramatically expanded their distribution range to an area encompassing the eastern coast of the USA, Bermuda, the entire Caribbean region and the Gulf of Mexico. The rapidity of the lionfish spread has raised concerns in other parts of the Atlantic that may be under the reach of the invasion. Despite the anticipation that lionfish would eventually extend their range throughout most of the eastern coast of South America, it had not been recorded in Brazil until now. Here we report the first lionfish appearance for the Brazilian coast and show that the individual collected by us is genetically linked to the invasive Caribbean population. Since small-range endemics are found in several locations in Brazil and are among the species that are most vulnerable to extinction, we recommend urgent control, management and education measures aimed at minimizing the effects of this impending invasion.

Reef fish structure and distribution in a south-western Atlantic Ocean tropical island

The community structure of the reef fish fauna of Trindade Island, a volcanic oceanic island located 1160 km off the coast of Brazil, is described based on intensive visual censuses. Seventy-six species were encountered in 252 censuses, with mean ± S.E. of 99 ± 3 individuals and 15.7 ± 0.3 species 40 m(-2) transect. The average fish biomass, calculated from length-class estimation, was 22.1 kg 40 m(-2) transect. The species contributing most to biomass were, in decreasing order, Melichthys niger, Cephalopholis fulva, Kyphosus spp., Holocentrus adscensionis, Sparisoma amplum, Sparisoma axillare, Acanthurus bahianus and Epinephelus adscensionis. Carnivorous fishes were the largest trophic group in terms of biomass, followed by omnivores and roving herbivores. The two predominant types of reef habitat, fringing reefs built by coralline algae and rocky reefs made of volcanic boulders, showed significant differences in the biomass and the abundance of the trophic guilds. Within each habitat type, significant differences in species richness, density and biomass were detected among crest, slope and interface zones. Although similar in overall species composition to coastal reefs in Brazil, the fish fauna of Trindade Island shares certain characteristics, such as a high abundance of planktivores, with other Brazilian oceanic islands. Despite comparatively high fish biomass, including the macro-carnivorous species habitually targeted by fisheries, signs of overfishing were evident. These findings highlight the urgency for a conservation initiative for this isolated, unique and vulnerable reef system.

Fish Biodiversity of the Vitória-Trindade Seamount Chain, Southwestern Atlantic: An Updated Database

Despite a strong increase in research on seamounts and oceanic islands ecology and biogeography, many basic aspects of their biodiversity are still unknown. In the southwestern Atlantic, the Vitória-Trindade Seamount Chain (VTC) extends ca. 1,200 km offshore the Brazilian continental shelf, from the Vitória seamount to the oceanic islands of Trindade and Martin Vaz. For a long time, most of the biological information available regarded its islands. Our study presents and analyzes an extensive database on the VTC fish biodiversity, built on data compiled from literature and recent scientific expeditions that assessed both shallow to mesophotic environments. A total of 273 species were recorded, 211 of which occur on seamounts and 173 at the islands. New records for seamounts or islands include 191 reef fish species and 64 depth range extensions. The structure of fish assemblages was similar between islands and seamounts, not differing in species geographic distribution, trophic composition, or spawning strategies. Main differences were related to endemism, higher at the islands, and to the number of endangered species, higher at the seamounts. Since unregulated fishing activities are common in the region, and mining activities are expected to drastically increase in the near future (carbonates on seamount summits and metals on slopes), this unique biodiversity needs urgent attention and management.

Biological attributes and major threats as predictors of the vulnerability of species: a case study with Brazilian reef fishes

Global biodiversity declines and increasing rates of extinction necessitate the assessment and prediction of the vulnerability of species to extinction. Here, we examine the relationships between conservation status and ecological traits of reef fish species of the Brazilian biogeographical province. We used binomial tests and a logistic regression to address two questions. Do biological attributes differ between threatened and non-threatened fishes? Which combination of traits and impacts exerts greater influence on species threat status? Of the 559 species, 36 are categorized as threatened (compiled from global, national and local Red Lists). Three species are categorized as Critically Endangered, seven as Endangered and 26 as Vulnerable. Our analyses revealed that Elasmobranchii, sex- changing bony fishes and endemic species are the most vulnerable reef fishes in Brazilian waters. Body size and trophic category were identified as good predictors of the vulnerability of a species to extinction. Small-bodied species that are exploited by the ornamental trade and have complex reproductive strategies are also of concern. Such combinations of attributes could be of value in predicting which reef fish species elsewhere have a high risk of extinction.

Marine Bioinvasions in the Brazilian Coast: Brief Report on History of Events, Vectors, Ecology, Impacts and Management of Non-indigenous Species

The Brazilian coast extends for about 8000 km from Cape Orange (4°N) to Chui (34°S) (Fig. 27.1). This long coastline comprises a variety of ecosystems under the influence of oligotrophic waters transported by two western boundary currents, the Brazil and North Brazil currents (Stramma and England 1999), together with continental influences related to a wide spectrum of river inputs, the largest of which being the massive Amazon River plume in the north and the combination of the La Plata and Patos Lagoon outflows in the south (Castro Filho and Miranda 1998). Seasonal or intermittent intrusions of cold and nutrient-rich oceanic waters carried underneath the Brazil and North Brazil currents (the so-called South Atlantic Central Water) is another important physical forcing on regional shelf ecosystems of Brazil, particularly on the Southern Brazilian Bight and more southern areas (Lopes et al. 2006). Regionally important coastal ecosystems are (1) sandy beaches, occurring from north to south, with the largest ones in southernmost areas of the state of Rio Grande do Sul; (2) mangrove forests, which occur from the northern tip of the country to the state of Santa Catarina in the south, (3) coral reefs, ranging from Maranhão to Bahia including the largest coral reef system of the South Atlantic, the Abrolhos Reefs (Leão et al. 2003); (4) rocky shores, spread along the entire coast from the northeast to the south, but more extensive in the southeast; (5) coastal lagoons, such as the Cananéia-Iguape estuarine complex in the state of São Paulo and the Patos Lagoon in the state of Rio Grande do Sul; (6) saltmarshes, of regional importance only south of the state of São Paulo; and (7) sandy to muddy bottoms of the infralitoral realm down to the shelf break (Seeliger and Kjerfve 2000). Given such a large array of marine ecosystems and the extent of the Brazilian coastline, the country is undoubtedly a major receptor and donor of tropical and subtropical organisms in the world’s oceans. Research on marine bioinvasions is a relatively new topic in Brazil. The first comprehensive lists of introduced and invasive species are starting to be compiled and the understanding of patterns of invasion strategies is far from being accom-

Between-Habitat Variation of Benthic Cover, Reef Fish Assemblage and Feeding Pressure on the Benthos at the Only Atoll in South Atlantic: Rocas Atoll, NE Brazil.

The Southwestern Atlantic harbors unique and relatively understudied reef systems, including the only atoll in South Atlantic: Rocas atoll. Located 230 km off the NE Brazilian coast, Rocas is formed by coralline red algae and vermetid mollusks, and is potentially one of the most “pristine” areas in Southwestern Atlantic. We provide the first comprehensive and integrative description of the fish and benthic communities inhabiting different shallow reef habitats of Rocas. We studied two contrasting tide pool habitats: open pools, which communicate with the open ocean even during low tides, thus more exposed to wave action; and closed pools, which remain isolated during low tide and are comparatively less exposed. Reef fish assemblages, benthic cover, algal turfs and fish feeding pressure on the benthos remarkably varied between open and closed pools. The planktivore Thalassoma noronhanum was the most abundant fish species in both habitats. In terms of biomass, the lemon shark Negaprion brevirostris and the omnivore Melichtys niger were dominant in open pools, while herbivorous fishes (mainly Acanthurus spp.) prevailed in closed pools. Overall benthic cover was dominated by algal turfs, composed of articulated calcareous algae in open pools and non-calcified algae in closed pools. Feeding pressure was dominated by acanthurids and was 10-fold lower in open pools than in closed pools. Besides different wave exposure conditions, such pattern could also be related to the presence of sharks in open pools, prompting herbivorous fish to feed more in closed pools. This might indirectly affect the structure of reef fish assemblages and benthic communities. The macroalgae Digenea simplex, which is uncommon in closed pools and abundant in the reef flat, was highly preferred in herbivory assays, indicating that herbivory by fishes might be shaping this distribution pattern. The variations in benthic and reef fish communities, and feeding pressure on the benthos between open and closed pools suggest that the dynamics in open pools is mostly driven by physical factors and the tolerance of organisms to harsh conditions, while in closed pools direct and indirect effects of species interactions also play an important role. Understanding the mechanisms shaping biological communities and how they scale-up to ecosystem functioning is particularly important on isolated near-pristine systems where natural processes can still be studied under limited human impact.

Discriminating Different Classes of Biological Networks by Analyzing the Graphs Spectra Distribution

The brains structural and functional systems, protein-protein interaction, and gene networks are examples of biological systems that share some features of complex networks, such as highly connected nodes, modularity, and small-world topology. Recent studies indicate that some pathologies present topological network alterations relative to norms seen in the general population. Therefore, methods to discriminate the processes that generate the different classes of networks (e.g., normal and disease) might be crucial for the diagnosis, prognosis, and treatment of the disease. It is known that several topological properties of a network (graph) can be described by the distribution of the spectrum of its adjacency matrix. Moreover, large networks generated by the same random process have the same spectrum distribution, allowing us to use it as a “fingerprint”. Based on this relationship, we introduce and propose the entropy of a graph spectrum to measure the “uncertainty” of a random graph and the Kullback-Leibler and Jensen-Shannon divergences between graph spectra to compare networks. We also introduce general methods for model selection and network model parameter estimation, as well as a statistical procedure to test the nullity of divergence between two classes of complex networks. Finally, we demonstrate the usefulness of the proposed methods by applying them to (1) protein-protein interaction networks of different species and (2) on networks derived from children diagnosed with Attention Deficit Hyperactivity Disorder (ADHD) and typically developing children. We conclude that scale-free networks best describe all the protein-protein interactions. Also, we show that our proposed measures succeeded in the identification of topological changes in the network while other commonly used measures (number of edges, clustering coefficient, average path length) failed.

Community structure of reef fishes on a remote oceanic island (St Peter and St Paul’s Archipelago, equatorial Atlantic): the relative influence of abiotic and biotic variables

This study investigates the reef fish community structure of the world’s smallest remote tropical island, the St Peter and St Paul’s Archipelago, in the equatorial Atlantic. The interplay between isolation, high endemism and low species richness makes the St Peter and St Paul’s Archipelago ecologically simpler than larger and highly connected shelf reef systems, making it an important natural laboratory for ecology and biogeography, particularly with respect to the effects of abiotic and biotic factors, and the functional organisation of such a depauperate community. Boosted regression trees were used to associate density, biomass and diversity of reef fishes with six abiotic and biotic variables, considering the community both as a whole and segregated into seven trophic groups. Depth was the most important explanatory variable across all models, although the direction of its effect varied with the type of response variable. Fish density peaked at intermediate depths, whereas biomass and biodiversity were respectively positively and negatively correlated with depth. Topographic complexity and wave exposure were less important in explaining variance within the fish community than depth. No effects of the predictor biotic variables were detected. Finally, we notice that most functional groups are represented by very few species, highlighting potential vulnerability to disturbances.