Carlos Pedraza-Lara

Mitochondrial DNA structure of the Iberian populations of the white-clawed crayfish, Austropotamobius italicus italicus (Faxon, 1914).

This study describes the mitochondrial structure of the Iberian population of the white-clawed crayfish Austropotamobius italicus under a phylogeographyc context and considering the genetic variation of the entire taxon distributed in the southern part of Europe. Current sub-specific hypotheses were only partially supported, and a genetic structure related to climatic events is postulated as the main factor explaining its variation. Due to a more extensive sampling and sequencing strategy, the two different mitochondrial lineages of the taxon were found in the Iberian Peninsula, and haplotype variation of populations was observed in a considerable extent regarding that reported in previous studies from other parts of its distribution range. This evidence, together with the timing of Pleistocene expansion events for the Iberian populations (approximately 10,772-20,004 YBP) as well as an estimated splitting time from Italian populations previous to the last glacial maximum (T=34,858 years) suggest that the presence of A. italicus in the Iberian Peninsula could be explained by a combination of contrasting dispersal histories and a complex biogeographic scenario. We propose that although possible, human translocations may not be the only cause to explain the complex distribution patterns of species strongly affected by recent climatic events.

Phylogeny and Evolutionary Patterns in the Dwarf Crayfish Subfamily (Decapoda: Cambarellinae)

The Dwarf crayfish or Cambarellinae, is a morphologically singular subfamily of decapod crustaceans that contains only one genus, Cambarellus. Its intriguing distribution, along the river basins of the Gulf Coast of United States (Gulf Group) and into Central México (Mexican Group), has until now lacked of satisfactory explanation. This study provides a comprehensive sampling of most of the extant species of Cambarellus and sheds light on its evolutionary history, systematics and biogeography. We tested the impact of Gulf Group versus Mexican Group geography on rates of cladogenesis using a maximum likelihood framework, testing different models of birth/extinction of lineages. We propose a comprehensive phylogenetic hypothesis for the subfamily based on mitochondrial and nuclear loci (3,833 bp) using Bayesian and Maximum Likelihood methods. The phylogenetic structure found two phylogenetic groups associated to the two main geographic components (Gulf Group and Mexican Group) and is partially consistent with the historical structure of river basins. The previous hypothesis, which divided the genus into three subgenera based on genitalia morphology was only partially supported (P = 0.047), resulting in a paraphyletic subgenus Pandicambarus. We found at least two cases in which phylogenetic structure failed to recover monophyly of recognized species while detecting several cases of cryptic diversity, corresponding to lineages not assigned to any described species. Cladogenetic patterns in the entire subfamily are better explained by an allopatric model of speciation. Diversification analyses showed similar cladogenesis patterns between both groups and did not significantly differ from the constant rate models. While cladogenesis in the Gulf Group is coincident in time with changes in the sea levels, in the Mexican Group, cladogenesis is congruent with the formation of the Trans-Mexican Volcanic Belt. Our results show how similar allopatric divergence in freshwater organisms can be promoted through diverse vicariant factors.

Systematics and evolution of gall formation in the plant‐associated genera of the wasp subfamily Doryctinae (Hymenoptera: Braconidae)

Gall formation is a specialised form of phytophagy that consists of abnormal growth of host plant tissue induced by other organisms, principally insects and mites. In the mainly parasitoid wasp subfamily Doryctinae, gall association, represented by gall inducers, inquilines and their parasitoids, is known for species of seven genera. Previous molecular studies recovered few species of six of these genera as monophyletic despite their disparate morphologies. Here, we reconstructed the evolutionary relationships among 47 species belonging to six gall‐associated doryctine genera based on two mitochondrial and two nuclear gene markers. Most of the Bayesian analyses, performed with different levels of incomplete taxa and characters, supported the monophyly of gall‐associated doryctines, with Heterospilus (Heterospilini) as sister group. Percnobracon Kieffer and Jörgensen and Monitoriella Hedqvist were consistently recovered as monophyletic, and the validity of the monotypic Mononeuron was confirmed with respect to Allorhogas Gahan. A nonmonophyletic Allorhogas was recovered, although without significant support. The relationships obtained and the gathered morphological and biological information led us to erect three new genera originally assigned to Psenobolus: Ficobolus gen.n. (F. paniaguai sp.n. and F. jaliscoi sp.n.), Plesiopsenobolus gen.n. (Pl. mesoamericanus sp.n., Pl. plesiomorphus van Achterberg and Marsh comb.n., and Pl. tico sp.n.), and Sabinita gen.n. (S. mexicana sp.n.). The origin of the gall‐associated doryctine clade was estimated to have occurred during the middle Miocene to early Oligocene, 16.33–30.55 Ma. Our results support the origin of true gall induction in the Doryctinae from parasitoidism of other gall‐forming insects. Moreover, adaptations to attack different gall‐forming taxa on various unrelated plant families probably triggered species diversification in the main Allorhogas clade and may also have promoted the independent origin of gall formation on at least three plant groups. Species diversification in the remaining doryctine taxa was probably a result of host shifts within a particular plant taxon and shifts to different plant organs.

Phylogenetic relationships and description of Bolivar, a new genus of Neotropical doryctine wasps (Hymenoptera : Braconidae)

Abstract. Metasomal elongation is a common feature in species of various parasitoid Hymenoptera, probably due to adaptive morphological convergence to similar parasitoid strategies. The braconid subfamily Doryctinae is perhaps where this feature has evolved the most times independently. Here we recognise a new Neotropical doryctine wasp genus with a petiolate first metasomal tergum, based on molecular and morphological analysis. The phylogenetic affinities of the new genus within Doryctinae and the relationships among six of its described and three potentially cryptic, undescribed species were reconstructed using sequence data from three genes, wingless, 28SrDNA and COI. The new genus is resolved in a clade together with Semirhytus Szépligeti, Johnsonius Marsh and Parallorhogas Marsh. These four genera share vein m-cu of the hind wing slightly curved distally and the propodeum with a distinct lateral and median longitudinal carina and an apical areola. The relationships recovered among the examined species suggest a South American origin for the new genus and its subsequent diversification into Central America and Mexico. Described as Bolivar, gen. nov., this new taxon comprises eight species, two species previously placed within Notiospathius Matthews & Marsh, B. ornaticornis (Cameron), comb. nov., and B. bribri (Marsh), comb. nov., and six new species (B. ecuadorensis, sp. nov., B. helmuthi, sp. nov., B. pittieri, sp. nov., B. risaraldae, sp. nov., B. teres, sp. nov. and B. tuxtlae, sp. nov.).

Montane and coastal species diversification in the economically important Mexican grasshopper genus Sphenarium (Orthoptera: Pyrgomorphidae).

The genus Sphenarium (Pyrgomorphidae) is a small group of grasshoppers endemic to México and Guatemala that are economically and culturally important both as a food source and as agricultural pests. However, its taxonomy has been largely neglected mainly due to its conserved interspecific external morphology and the considerable intraspecific variation in colour pattern of some taxa. Here we examined morphological as well as mitochondrial and nuclear DNA sequence data to assess the species boundaries and evolutionary history in Sphenarium. Our morphological identification and DNA sequence-based species delimitation, carried out with three different approaches (DNA barcoding, general mixed Yule-coalescent model, Bayesian species delimitation), all recovered a higher number of putative species of Sphenarium than previously recognised. We unambiguously delimit seven species, and between five and ten additional species depending on the data/method analysed. Phylogenetic relationships within the genus strongly support two main clades, one exclusively montane, the other coastal. Divergence time estimates suggest late Miocene to Pliocene ages for the origin and most of the early diversification events in the genus, which were probably influenced by the formation of the Trans-Mexican Volcanic Belt. A series of Pleistocene events could have led to the current species diversification in both montane and coastal regions. This study not only reveals an overlooked species richness for the most popular edible insect in Mexico, but also highlights the influence of the dynamic geological and climatic history of the region in shaping its current diversity.

Phylogenetic evidence from freshwater crayfishes that cave adaptation is not an evolutionary dead-end

Caves are perceived as isolated, extreme habitats with a uniquely specialized biota, which long ago led to the idea that caves are “evolutionary dead‐ends.” This implies that cave‐adapted taxa may be doomed for extinction before they can diversify or transition to a more stable state. However, this hypothesis has not been explicitly tested in a phylogenetic framework with multiple independently evolved cave‐dwelling groups. Here, we use the freshwater crayfish, a group with dozens of cave‐dwelling species in multiple lineages, as a system to test this hypothesis. We consider historical patterns of lineage diversification and habitat transition as well as current patterns of geographic range size. We find that while cave‐dwelling lineages have small relative range sizes and rarely transition back to the surface, they exhibit remarkably similar diversification patterns to those of other habitat types and appear to be able to maintain a diversity of lineages through time. This suggests that cave adaptation is not a “dead‐end” for freshwater crayfish, which has positive implications for our understanding of biodiversity and conservation in cave habitats.

A new species of dwarf crayfish (Decapoda: Cambaridae) from central México, as supported by morphological and genetic evidence

Dwarf crayfish are a subfamily of freshwater decapods distributed along the southeastern coast of United States and the Central Plateau of México. Recent phylogenetic studies have found that diversity of dwarf crayfish in México could be currently underestimated, and suggested the existence of possible new species for a number of clades for which taxonomic identity was uncertain, including one from Zacapu, a small lake in the Trans-Mexican Volcanic Belt. Here, a congruence criterion between morphological and molecular evidence is used to test if this previously detected clade should be considered as a new species. A set of morphometric variables was taken to characterize variation from this population (including some newly proposed traits possibly valuable for species discrimination) and to compare it statistically to its closest relative, C. chapalanus. Also, additional individuals to those previously sequenced were included using a set of molecular characters, including 5 molecular markers (three mitochondrial and two nuclear fragments) and all extant species described to date from México. Principal Component Analysis, Mann-Whitney paired test and Discriminant Factor Analysis support morphological differentiation of the Zacapu population. Phylogenetic analyses are congruent with morphology and confirm that this population constitutes an exclusive monophyletic clade with high support values. Additionally, genetic Cytochrome Oxidase subunit I (cox1) distance between Zacapu and the closest related species is above the average between species distance in crayfish (ML=3.6%). Congruence between morphology and molecular evidence support the hypothesis that the population from lake Zacapu should be considered a new species, to which the name C. zacapuensis sp. nov. is given and its description provided. With respect to its closest relatives, C. zacapuensis sp. nov. is diagnosed according to the following set of morphological characters: a wider cephalotorax (5.10-5.70 vs. 4.40-4.70), wider abdomen (4.52-4.84 vs. 3.94-4.35) a more robust chela (2.12-2.48 vs. 1.72-1.96) and a shorter merus (3.04-4.20 vs. 4.26-4.71) and mesial process of first pleopod of the form I male reaching distally well beyond the other elements. This study emphasizes the utility of using an integrative framework for species recognition in crayfish.

Sergey gen. n., a new doryctine genus from temperate forests of Mexico and Cuba (Hymenoptera, Braconidae)

Abstract The new doryctine genus Sergey gen. n. is described with four new species (Sergey cubaensis Zaldívar-Riverón & Martínez, sp. n., Sergey coahuilensis Zaldívar-Riverón & Martínez, sp. n., Sergey tzeltal Martínez & Zalídivar-Riverón, sp. n., Sergey tzotzil Martínez & Zalídivar-Riverón, sp. n.) from temperate forests of Mexico and Cuba. Similar to many other doryctine taxa, the new genus has a considerably elongated, petiolate basal sternal plate of the first metasomal tergite, although it can be distinguished from these by having the mesoscutum sharply declivous anteriorly with sharp anterolateral edges. The described species have been characterised molecularly based on two mitochondrial (COI, cyt b) and one nuclear (28S) gene markers. Based on the mitochondrial gene genealogies reconstructed, the evidence suggests the existence of incomplete lineage sorting or hybridization in the populations from Chiapas and Oaxaca assigned to Sergey tzeltal sp. n.

Identity of freshwater shrimp populations (Palaemon Weber, 1795) from northern Mexico: genetic variation at local and regional scales

The freshwater genus Palaemon is widely distributed in north-eastern Mexico, where six species have been recognized. Of special interest is the area of the Cuatro Cienegas Valley (CCV) and the Salado and Bravo Rivers basins in central and northern Coahuila, where interconnections, ancient and contemporary, have created a mosaic of populations of species belonging to Palaemon that cannot unequivocally be assigned to one species. We seek to encompass the species determination in a phylogenetic framework by reconstructing phylogenetic relationships of the aforementioned populations and 4 of the species occurring in Mexico. We collected information of three genetic fragments (COI, 12S, and H3) and performed maximum likelihood and Bayesian inference phylogenetic analyses. Also, through the analysis of a partial sequence of the cytochrome oxidase subunit I gene (COI) from individuals coming from 22 populations, we explored phylogeographic patterns from the three basins. Relaxed molecular clock were carried out focused on dating the cladogenesis of all species, while mismatch and Bayesian Skyline Plots analyses were used to test for possible demographic changes in populations from CCV. Gene-separated and concatenated phylogenetic analyses supported the monophyly of the species described from Mexico, but did not show their inclusion in one monophyletic clade, rather depicting a structure congruent with multiple invasions to freshwater. Dating analysis provided long-term temporal framework for cladogenesis. Three different lineages were found in the CCV, confirming the high diversity of this region. One of them is identified with P. sutkussi, and two are possible new species to science. Haplotype analyses provided insight from recent population processes and are congruent with a scenario where despite keeping signatures of past cladogenesis, more recent genetic structure reveals surprisingly higher connectivity between basins associated to the Bravo river system and CCV.