Carol L. Chambers

Response of Small Mammals to Clearcutting, Burning, and Glyphosate Application in the Oregon Coast Range

We sampled amphibians on 3 red alder (Alnus rubra) sites 1 year before and 1 and 2 years after the following treatments were applied to each site: (1) control (uncut), (2) clearcut and broadcast burned, and (3) clearcut, broadcast burned, and then sprayed with the herbicide glyphosate. All sites included uncut riparian buffer strips. For 3 of the 6 species with ≥20 captures in pitfall traps, we did not detect changes in capture rates after clearcutting. Capture rates of ensatinas (Ensatina eschscholtzii) and Pacific giant salamanders (Dicamptodon tenebrosus) decreased after logging. Capture rates of western redback salamanders (Plethodon vehiculum) increased the first year after logging, probably because the salamanders sheltered in pitfalls, but effects on populations were unclear. Logging did not significantly alter capture rates of rough-skin newts (Taricha granulosa), Dunns salamanders (P. dunni), and red-legged frogs (Rana aurora). Planning the location and timing of clearcuts or other silvicultural practices over a landscape and retaining riparian buffer strips may be necessary to ensure long-term persistence of Pacific giant salamanders. We did not detect any effects of herbicide spraying on capture rates. Capture rates for rough-skin newts and red-legged frogs were higher in uncut red alder stands than in Douglas-fir (Pseudotsuga menziesii) stands sampled in other studies, an indication that, when red alder stands are converted to Douglas-fir, some alders should be left adjacent to streams to provide habitat for these species and other hardwood associates.

Use of Wildlife Water Developments by Birds in Southwest Arizona During Migration

Abstract Anecdotal evidence suggests that desert water developments attract birds; however, few studies have focused on the role of surface water in habitat selection by migratory birds. Therefore, we studied bird use of wildlife water developments in the Sonoran Desert of southwestern Arizona, USA, using 2 observational approaches (bird surveys in washes with and without water developments and direct observations at water developments) and 1 experimental approach (direct observations at water sources with and without vegetation cover). In spring 2004, we conducted weekly bird surveys at 3 pairs (with and without water developments) of washes. In spring 2005, we designed an experiment to test whether migratory birds more frequently used water developments with than without vegetation cover. During spring, in both 2004 and 2005, we documented use of water by directly observing birds at 13 existing water developments. We found little evidence to support that water developments were important water sources for migratory birds. Migratory bird communities in desert washes near wildlife water developments did not differ in species richness, relative abundance, or density when compared with washes without water developments. This observation suggests that the wildlife water developments that we studied were not an attractant to migratory birds at the landscape scale. At a finer scale, migratory birds rarely (0.1% of all observations) used water developments and experimental water sources. However, resident bird species frequently were recorded (>69,000 observations) drinking and bathing at wildlife water developments. Based on our observations, we conclude that water developments are an important resource for local bird populations in the Sonoran Desert, USA, particularly during periods of drought.

Potential effects of livestock water-trough modifications on bats in northern Arizona

Abstract In the southwestern United States, livestock water troughs may be the only water source available to bats during dry seasons or periods of drought. We found that 38% of the 90 livestock water troughs we surveyed in northern Arizona, USA, were modified with either fencing to separate pastures or braces to strengthen the structures. We tested if these modifications could affect bat drinking behavior or increase injury risk by simultaneously videotaping modified and unmodified troughs in a series of crossover experiments performed between 1 March and 26 August 2004. The bats that we observed did not avoid modified troughs but required 3–6 times the number of passes to approach the water surface at both troughs with fences and those with support braces. The number of passes required to drink increased with reduced water surface area, suggesting that modifications of smaller troughs may have a greater effect. Small (e.g., Myotis spp.) and large (e.g., pallid bat [Antrozous pallidus]) bats responded similarly in the experiments. These effects may be energetically expensive for bats, especially during periods of high energy demands, such as pregnancy and lactation. Although we did not document any injuries or mortalities, 16 bats contacted wires at modified troughs with smaller surface area. This suggests that modifications of smaller troughs may pose higher risks of injury. To reduce these risks, we recommend removing modifications on water troughs whenever feasible.

Community occupancy responses of small mammals to restoration treatments in ponderosa pine forests, northern Arizona, USA.

In western North American conifer forests, wildfires are increasing in frequency and severity due to heavy fuel loads that have accumulated after a century of fire suppression. Forest restoration treatments (e.g., thinning and/or burning) are being designed and implemented at large spatial and temporal scales in an effort to reduce fire risk and restore forest structure and function. In ponderosa pine (Pinus ponderosa) forests, predominantly open forest structure and a frequent, low-severity fire regime constituted the evolutionary environment for wildlife that persisted for thousands of years. Small mammals are important in forest ecosystems as prey and in affecting primary production and decomposition. During 2006-2009, we trapped eight species of small mammals at 294 sites in northern Arizona and used occupancy modeling to determine community responses to thinning and habitat features. The most important covariates in predicting small mammal occupancy were understory vegetation cover, large snags, and treatment. Our analysis identified two generalist species found at relatively high occupancy rates across all sites, four open-forest species that responded positively to treatment, and two dense-forest species that responded negatively to treatment unless specific habitat features were retained. Our results indicate that all eight small mammal species can benefit from restoration treatments, particularly if aspects of their evolutionary environment (e.g., large trees, snags, woody debris) are restored. The occupancy modeling approach we used resulted in precise species-level estimates of occupancy in response to habitat attributes for a greater number of small mammal species than in other comparable studies. We recommend our approach for other studies faced with high variability and broad spatial and temporal scales in assessing impacts of treatments or habitat alteration on wildlife species. Moreover, since forest planning efforts are increasingly focusing on progressively larger treatment implementation, better and more efficiently obtained ecological information is needed to inform these efforts.

SELECTION OF GAMBEL OAK ROOSTS BY SOUTHWESTERN MYOTIS IN PONDEROSA PINE-DOMINATED FORESTS, NORTHERN ARIZONA

Abstract Gambel oak (Quercus gambelii) is a valuable tree species for wildlife. In Arizona, USA, it occurs at higher elevations in association with ponderosa pine (Pinus ponderosa). Southwestern myotis (Myotis auriculus) is a bat species that has been anecdotally documented as selecting Gambel oak for maternity roost sites. During summers of 1999 and 2000, we conducted a radiotelemetry study to determine whether lactating, female southwestern myotis selected Gambel oak as maternity roosts within the ponderosa pine–Gambel oak forest in northern Arizona. We located 34 maternity roosts for southwestern myotis in Gambel oak trees (14 females) and 5 roosts in ponderosa pine snags (1 female). Maternity roosts were located in live Gambel oak trees >26-cm diameter at root collar (drc) that contained cavities. We used Akaikes Information Criterion (AIC) to evaluate 4 a priori hypotheses about southwestern Myotis maternity roost selection in northern Arizona. Our top model contained parameters for roost tree height and density of potential roost trees. Roost trees were taller than randomly selected Gambel oak trees. Forest patches immediately surrounding roost trees contained a higher density of large oak trees (drc >26 cm) than around randomly selected trees. We recommend the protection of large Gambel oak trees and encourage recruitment of large Gambel oak trees from smaller size classes to ensure that roosts remain available for southwestern myotis.

Species From Feces: Order-Wide Identification of Chiroptera From Guano and Other Non-Invasive Genetic Samples.

Bat guano is a relatively untapped reservoir of information, having great utility as a DNA source because it is often available at roosts even when bats are not and is an easy type of sample to collect from a difficult-to-study mammalian order. Recent advances from microbial community studies in primer design, sequencing, and analysis enable fast, accurate, and cost-effective species identification. Here, we borrow from this discipline to develop an order-wide DNA mini-barcode assay (Species from Feces) based on a segment of the mitochondrial gene cytochrome c oxidase I (COI). The assay works effectively with fecal DNA and is conveniently transferable to low-cost, high-throughput Illumina MiSeq technology that also allows simultaneous pairing with other markers. Our PCR primers target a region of COI that is highly discriminatory among Chiroptera (92% species-level identification of barcoded species), and are sufficiently degenerate to allow hybridization across diverse bat taxa. We successfully validated our system with 54 bat species across both suborders. Despite abundant arthropod prey DNA in guano, our primers were highly specific to bats; no arthropod DNA was detected in thousands of feces run on Sanger and Illumina platforms. The assay is extendable to fecal pellets of unknown age as well as individual and pooled guano, to allow for individual (using singular fecal pellets) and community (using combined pellets collected from across long-term roost sites) analyses. We developed a searchable database (http://nau.edu/CEFNS/Forestry/Research/Bats/Search-Tool/) that allows users to determine the discriminatory capability of our markers for bat species of interest. Our assay has applications worldwide for examining disease impacts on vulnerable species, determining species assemblages within roosts, and assessing the presence of bat species that are vulnerable or facing extinction. The development and analytical pathways are rapid, reliable, and inexpensive, and can be applied to ecology and conservation studies of other taxa.

Roosts of Allen's Lappet‐Browed Bat in Northern Arizona

Abstract In Arizona, USA, Allens lappet-browed bat (Idionycteris phyllotis) forms maternity colonies in ponderosa pine (Pinus ponderosa) snags. There is little information on the roosting habitat of males. We used radiotelemetry to locate 16 maternity, 3 postlactating, and 2 bachelor roosts and combined data with unpublished data for maternity roosts (n = 11) located in 1993–1995. Most (96%) maternity roosts were in large-diameter (x̄ ± SE: 64 ± 2.7 cm) ponderosa pine snags under sloughing bark. Models that best predicted the probability of a snags use as a maternity roost indicated bats selected taller snags closer to forest roads than comparison snags. Maternity roosts averaged 11 bats per roost (SE = 2, n = 15; from exit counts) and were an average distance of 1.6 km from capture sites (SE = 0.3, n = 17). Bachelor roosts were in vertical sandstone cliff faces in pinyon–juniper (Pinus edulis–Juniperus spp.) woodlands approximately 12 km from capture sites; these and other capture records in Arizona indicated sexual segregation may have occurred during the maternity season. Of 11 maternity snag roosts located in 1993–1995, only one continued to function as a roost. Resource managers should maintain patches of large-diameter ponderosa pine snags with peeling bark to provide maternity roosting habitat for Allens lappet-browed bat.

Population genetic patterns among social groups of the endangered Central American spider monkey (Ateles geoffroyi) in a human‐dominated landscape

Spider monkeys (Genus: Ateles) are a widespread Neotropical primate with a highly plastic socioecological strategy. However, the Central American species, Ateles geoffroyi, was recently re-listed as endangered due to the accelerated loss of forest across the subcontinent. There is inconsistent evidence that spider monkey populations could persist when actively protected, but their long-term viability in unprotected, human-dominated landscapes is not known. We analyzed noninvasive genetic samples from 185 individuals in 14 putative social groups on the Rivas Isthmus in southwestern Nicaragua. We found evidence of weak but significant genetic structure in the mitochondrial control region and in eight nuclear microsatellite loci plus negative spatial autocorrelation in Fst and kinship. The overall pattern suggests strong localized mating and at least historical female-biased dispersal, as is expected for this species. Heterozygosity was significantly lower than expected under random mating and lower than that found in other spider monkey populations, possibly reflecting a recent decline in genetic diversity and a threat from inbreeding. We conclude that despite a long history of human disturbance on this landscape, spider monkeys were until recently successful at maintaining gene flow. We consider the recent decline to be further indication of accelerated anthropogenic disturbance, but also of an opportunity to conserve native biodiversity. Spider monkeys are one of many wildlife species in Central America that is threatened by land cover change, and an apt example of how landscape-scale conservation planning could be used to ensure long-term persistence.

Avian Use of Desert Wildlife Water Developments as Determined by Remote Videography

Abstract In the desert Southwest, migrating birds have been documented using upland habitat and xeroriparian washes as well as riparian areas. Yet aside from the river corridors, natural water sources (e.g., natural rock tanks [tinajas], springs, and ephemeral washes) in upland areas are scarce. Because of this scarcity, state and federal resource managers augmented water sources throughout the Southwest by constructing permanent wildlife water developments with the intention of enhancing game populations. However, despite these increases in free-standing water, there is a paucity of information on the use of water by birds during migration. Our objectives were to document use of these wildlife water developments by resident and migratory songbirds and assess the effectiveness of monitoring these species using remote color videography. We placed color video cameras at 2 wildlife water developments in southwestern Arizona during the spring and fall of 2004. Although we observed more use by migrants during spring than fall, overall use by migratory birds was low. However, the wildlife water developments were frequently used by resident birds. Remote videography provided continuous information on daily and seasonal patterns of bird use at wildlife water catchments with negligible disturbance by observers, yet for passerines, we felt that the benefits of remote videography did not justify the high cost of equipment purchase, installation, maintenance, and data processing.

A RECONNAISSANCE OF SMALL MAMMAL COMMUNITIES IN GARLAND AND GOVERNMENT PRAIRIES, ARIZONA

ABSTRACT. Small mammals play key ecological roles in grassland ecosystems, yet little is known regarding small mammal communities in large (>50 km2), high-elevation prairies embedded in ponderosa pine (Pinus ponderosa) forests in north central Arizona. To provide information on community composition and habitat relationships, we live-trapped small mammals on 6 transects in 2 prairies in 2008. We captured 78 individuals in 5501 trap occasions. Capture rates were low and varied widely among transects. Community composition was simple, with only 3 species of small mammals captured. In order of relative abundance, these species were deer mouse (Peromyscus maniculatus, n = 44 individuals), Mogollon vole (Microtus mogollonensis, n = 22), and spotted ground squirrel (Spermophilus spilosoma, n = 12). Deer mice were captured on all transects and voles on all but one transect. In contrast, spotted ground squirrels were captured on only 2 transects and were relatively common on only one transect. There were no previous records of spotted ground squirrels in these prairies. Deer mice were positively associated with rock cover and vegetation height. Voles were positively associated with shrub cover and combined cover of live and dead vegetation and were negatively associated with bare ground. Spotted ground squirrels were positively associated with forb cover. This study provides baseline data on small mammal communities in these prairies and documents the presence of a previously unknown species. Further studies would be desirable to better understand spatial and temporal variation in these communities, habitat relationships, and effects of land-use practices on small mammals and their habitats.