Carsten Budke
Bielefeld University
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Publication
Featured researches published by Carsten Budke.
Journal of Physical Chemistry B | 2009
Carsten Budke; Carolin Heggemann; M. Koch; Norbert Sewald; Thomas Koop
The Ostwald ripening of polycrystalline ice in aqueous sucrose solutions was investigated experimentally. The kinetics of this ice recrystallization process was studied at temperatures between -6 and -10 degrees C and varying ice volume fractions. Using the theory of Lifshitz, Slyozov, and Wagner (LSW), the diffusion-limited rate constant for ice recrystallization was determined. Also, the effects of synthetic analogues of natural antifreeze glycoproteins (AFGP) were studied. These analogues synAFGPmi (i = 3-5) contained monosaccharide side groups instead of disaccharide side groups that occur in natural AFGP. In order to account for the inhibition effect of the synAFGPmi, we have modified classical LSW theory, allowing for the derivation of inhibition rate constants. It was found that the investigated synAFGPmi inhibit ice recrystallization at concentrations down to approximately 3 microg mL(-1) or, equivalently, approximately 1 micromol L(-1) for the largest synAFGPmi investigated: synAFGPm5. Hence, our new method is capable of quantitatively assessing the efficiency of very similar AFGP with a sensitivity that is at least 2 orders of magnitude larger than that typical for quantitative thermal hysteresis measurements.
Amino Acids | 2010
Carolin Heggemann; Carsten Budke; Benjamin Schomburg; Zsuzsa Majer; Marco Wißbrock; Thomas Koop; Norbert Sewald
Antifreeze glycoproteins enable life at temperatures below the freezing point of physiological solutions. They usually consist of the repetitive tripeptide unit (-Ala-Ala-Thr-) with the disaccharide α-d-galactosyl-(1–3)-β-N-acetyl-d-galactosamine attached to each hydroxyl group of threonine. Monoglycosylated analogues have been synthesized from the corresponding monoglycosylated threonine building block by microwave-assisted solid phase peptide synthesis. This method allows the preparation of analogues containing sequence variations which are not accessible by other synthetic methods. As antifreeze glycoproteins consist of numerous isoforms they are difficult to obtain in pure form from natural sources. The synthetic peptides have been structurally analyzed by CD and NMR spectroscopy in proton exchange experiments revealing a structure as flexible as reported for the native peptides. Microphysical recrystallization tests show an ice structuring influence and ice growth inhibition depending on the concentration, chain length and sequence of the peptides.
Chemistry: A European Journal | 2012
Lilly Nagel; Carsten Budke; Roman S. Erdmann; Axel Dreyer; Helma Wennemers; Thomas Koop; Norbert Sewald
Certain Arctic and Antarctic ectotherm species have developed strategies for survival under low temperature conditions that, among others, consist of antifreeze glycopeptides (AFGP). AFGP form a class of biological antifreeze agents that exhibit the ability to inhibit ice growth in vitro and in vivo and, hence, enable life at temperatures below the freezing point. AFGP usually consist of a varying number of (Ala-Ala-Thr)(n) units (n=4-55) with the disaccharide β-D-galactosyl-(1→3)-α-N-acetyl-D-galactosamine glycosidically attached to every threonine side chain hydroxyl group. AFGP have been shown to adopt polyproline II helical conformation. Although this pattern is highly conserved among different species, microheterogeneity concerning the amino acid composition usually occurs; for example, alanine is occasionally replaced by proline in smaller AFGP. The influence of minor and major sequence mutations on conformation and antifreeze activity of AFGP analogues was investigated by replacement of alanine by proline and glycosylated threonine by glycosylated hydroxyproline. The target compounds were prepared by using microwave-enhanced solid phase peptide synthesis. Furthermore, artificial analogues were obtained by copper-catalyzed azide-alkyne cycloaddition (CuAAC): propargyl glycosides were treated with polyproline helix II-forming peptides comprising (Pro-Azp-Pro)(n) units (n=2-4) that contained 4-azidoproline (Azp). The conformations of all analogues were examined by circular dichroism (CD). In addition, microphysical analysis was performed to provide information on their inhibitory effect on ice recrystallization.
Scientific Reports | 2017
Katharina Dreischmeier; Carsten Budke; Lars Wiehemeier; Tilman Kottke; Thomas Koop
Ice nucleation and growth is an important and widespread environmental process. Accordingly, nature has developed means to either promote or inhibit ice crystal formation, for example ice-nucleating proteins in bacteria or ice-binding antifreeze proteins in polar fish. Recently, it was found that birch pollen release ice-nucleating macromolecules when suspended in water. Here we show that birch pollen washing water exhibits also ice-binding properties such as ice shaping and ice recrystallization inhibition, similar to antifreeze proteins. We present spectroscopic evidence that both the ice-nucleating as well as the ice-binding molecules are polysaccharides bearing carboxylate groups. The spectra suggest that both polysaccharides consist of very similar chemical moieties, but centrifugal filtration indicates differences in molecular size: ice nucleation occurs only in the supernatant of a 100 kDa filter, while ice shaping is strongly enhanced in the filtrate. This finding may suggest that the larger ice-nucleating polysaccharides consist of clusters of the smaller ice-binding polysaccharides, or that the latter are fragments of the ice-nucleating polysaccharides. Finally, similar polysaccharides released from pine and alder pollen also display both ice-nucleating as well as ice-binding ability, suggesting a common mechanism of interaction with ice among several boreal pollen with implications for atmospheric processes and antifreeze protection.
Beilstein Journal of Organic Chemistry | 2012
Lilly Nagel; Carsten Budke; Axel Dreyer; Thomas Koop; Norbert Sewald
Summary Antifreeze glycopeptides (AFGPs) are a special class of biological antifreeze agents, which possess the property to inhibit ice growth in the body fluids of arctic and antarctic fish and, thus, enable life under these harsh conditions. AFGPs are composed of 4–55 tripeptide units -Ala-Ala-Thr- glycosylated at the threonine side chains. Despite the structural homology among all the fish species, divergence regarding the composition of the amino acids occurs in peptides from natural sources. Although AFGPs were discovered in the early 1960s, the adsorption mechanism of these macromolecules to the surface of the ice crystals has not yet been fully elucidated. Two AFGP diastereomers containing different amino acid configurations were synthesized to study the influence of amino acid stereochemistry on conformation and antifreeze activity. For this purpose, peptides containing monosaccharide-substituted allo-L- and D-threonine building blocks were assembled by solid-phase peptide synthesis (SPPS). The retro-inverso AFGP analogue contained all amino acids in D-configuration, while the allo-L-diastereomer was composed of L-amino acids, like native AFGPs, with replacement of L-threonine by its allo-L-diastereomer. Both glycopeptides were analyzed regarding their conformational properties, by circular dichroism (CD), and their ability to inhibit ice recrystallization in microphysical experiments.
NUCLEATION AND ATMOSPHERIC AEROSOLS: 19th International Conference | 2013
Carsten Budke; Katharina Dreischmeier; D. Analía Pedernera; Axel Dreyer; Thomas Koop
Heterogeneous immersion mode freezing of water droplets is a process relevant to mixed-phase clouds. There exists, however, still uncertainty about the detailed mechanism of this process, i.e. is heterogeneous ice nucleation stochastic or singular? Here, an automated optical freezing array setup was developed and used in the present study. We investigated the influence of multiple experimental parameters upon ice nucleation temperatures and rates for several ice nuclei of atmospheric relevance.
Atmospheric Chemistry and Physics | 2014
Naruki Hiranuma; Stefanie Augustin-Bauditz; Heinz Bingemer; Carsten Budke; Joachim Curtius; Anja Danielczok; K. Diehl; Katharina Dreischmeier; Martin Ebert; Fabian Frank; Nadine Hoffmann; Konrad Kandler; Alexei Kiselev; Thomas Koop; Thomas Leisner; Ottmar Möhler; Björn Nillius; Andreas Peckhaus; D. Rose; Stephan Weinbruch; Heike Wex; Yvonne Boose; Paul J. DeMott; John D. Hader; Thomas C. J. Hill; Zamin A. Kanji; Gargi Kulkarni; E. J. T. Levin; Christina S. McCluskey; Masataka Murakami
ChemPhysChem | 2006
Carsten Budke; Thomas Koop
Atmospheric Chemistry and Physics | 2014
B. G. Pummer; Carsten Budke; Stefanie Augustin-Bauditz; D. Niedermeier; Laura Felgitsch; Christopher J. Kampf; Roland G. Huber; Klaus R. Liedl; Thomas Loerting; T. Moschen; Michael Schauperl; Martin Tollinger; Cindy E. Morris; Heike Wex; Hinrich Grothe; Ulrich Pöschl; Thomas Koop; Janine Fröhlich-Nowoisky
Atmospheric Chemistry and Physics | 2014
Heike Wex; Stefanie Augustin-Bauditz; Yvonne Boose; Carsten Budke; Joachim Curtius; K. Diehl; Axel Dreyer; Fabian Frank; Susan Hartmann; Naruki Hiranuma; Evelyn Jantsch; Zamin A. Kanji; Alexei Kiselev; Thomas Koop; O. Möhler; D. Niedermeier; Björn Nillius; Michael Rösch; D. Rose; C. Schmidt; I. Steinke; Frank Stratmann