Cécile Dupouy

Optical algorithms at satellite wavelengths for Total Suspended Matter in tropical coastal waters

Is it possible to derive accurately Total Suspended Matter concentration or its proxy, turbidity, from remote sensing data in tropical coastal lagoon waters? To investigate this question, hyperspectral remote sensing reflectance, turbidity and chlorophyll pigment concentration were measured in three coral reef lagoons. The three sites enabled us to get data over very diverse environments: oligotrophic and sediment-poor waters in the southwest lagoon of New Caledonia, eutrophic waters in the Cienfuegos Bay (Cuba), and sediment-rich waters in the Laucala Bay (Fiji). In this paper, optical algorithms for turbidity are presented per site based on 113 stations in New Caledonia, 24 stations in Cuba and 56 stations in Fiji. Empirical algorithms are tested at satellite wavebands useful to coastal applications. Global algorithms are also derived for the merged data set (193 stations). The performances of global and local regression algorithms are compared. The best one-band algorithms on all the measurements are obtained at 681 nm using either a polynomial or a power model. The best two-band algorithms are obtained with R412/R620, R443/R670 and R510/R681. Two three-band algorithms based on Rrs620.Rrs681/Rrs412 and Rrs620.Rrs681/Rrs510 also give fair regression statistics. Finally, we propose a global algorithm based on one or three bands: turbidity is first calculated from Rrs681 and then, if < 1 FTU, it is recalculated using an algorithm based on Rrs620.Rrs681/Rrs412. On our data set, this algorithm is suitable for the 0.2-25 FTU turbidity range and for the three sites sampled (mean bias: 3.6 %, rms: 35%, mean quadratic error: 1.4 FTU). This shows that defining global empirical turbidity algorithms in tropical coastal waters is at reach.

Satellite captures trichodesmium blooms in the southwestern tropical Pacific

Obtaining a true estimate of nitrogen fixation by cyanobacteria in the oceans, mainly Trichodesmium, is an important step toward understanding the entire nitrogen cycle in the tropical ocean. This strictly anaerobic process, which has a high Fe requirement, could regulate atmospheric CO2 over geological time. For example, during interglacial periods, N2 fixation would be too low (low Fe) to balance denitrification and the ocean would lose its fixed nitrogen [Falkowski, 1997]. Has the level of marine nitrogen fixation been underestimated until now? High N2 fixation rates measured on Trichodesmium spp. communities have led to an upward revision of this marine flux [Capone et al, 1997]. Recent modeling studies and observations predict that N2 fixation could regulate the long-term N:P equilibrium in the oceans and balance denitrification [Tyrell, 1999; J L. Sarmiento and N. Gruber, manuscript in preparation, 1999].The major nitrogen fixer, Trichodesmium spp., which are filamentous, nonheterocystous N2-fixing cyanobacteria, has a nearly ubiquitous distribution in the euphotic zone of tropical and subtropical seas and could play a major role in bringing new N to these oligotrophic systems. Satellite images from Sea-viewing Wide Field-of-view Sensor (SeaWiFs), the recently launched ocean color sensor, and data from a recent cruise, provide further evidence of the importance of Trichodesmium in the southwestern tropical Pacific Ocean.

Modeled and observed impacts of the 1997–1998 El Niño on nitrate and new production in the equatorial Pacific

The impact of the strong 1997-1998 E1Nifio event on nitrate distribution and new production in the equatorial Pacific is investigated, using a combination of satellite and in situ observations, and an ocean circulation-biogeochemical model. The general circulation model is forced with realistic wind stresses deduced from ERS-1 and ERS-2 scatterometers over the 1993-1998 period. Its outputs are used to drive a biogeochemical model where biology is parameterized as a nitrate sink. We first show that the models capture the essential circulation and biogeochemical equatorial features along with their temporal evolution during the 1997-1998 event, although the modeled variability seems underestimated. In particular, the model fails to reproduce unusual bloom conditions. This is attributed to the simplicity of the biological model. An analysis of the physical mechanisms responsible for the dramatic decrease of the biological equatorial production during E1 Nifio is then proposed. During the growth phase (November 1996 through June 1997), nitrate-poor waters of the western Pacific are advected eastward, and the vertical supply of nitrate is reduced due to nitracline deepening. These processes result in the invasion of the equatorial Pacific by nitrate-poor waters during the mature phase (November 1997 through January 1998). At that time, the central Pacific is nitrate limited and experiences warm pool oligotrophic conditions. As a result, the modeled new production over the equatorial Pacific drops by 40% compared to the mean 1993-1996 values. Then, while E1Nifio conditions are still present at the surface, the nitracline shallows over most of the basin in early 1998. Therefore the strengthening of the trade winds in May 1998 efficiently switches on the nitrate vertical supply over a large part of the equatorial Pacific, leading to a rapid return of high biological production conditions. Strong La Nifia conditions then develop, resulting in a biologically rich tongue extending as far west as 160oE for several months.

Inherent optical properties and satellite retrieval of chlorophyll concentration in the lagoon and open ocean waters of New Caledonia

The retrieval of chlorophyll-a concentration from remote sensing reflectance (Rrs) data was tested with the NASA OC4v4 algorithm on the inner New Caledonian lagoon (Case 2) and adjacent open ocean (Case 1) waters. The input to OC4v4 was Rrs measured in situ or modeled from waters inherent optical properties (2001-2007). At open ocean stations, backscattering and absorption coefficients were correlated with chlorophyll (R(2)=0.31-0.51, respectively), in agreement with models for Case 1 waters. Taking spectrofluorometric measurement as reference, the OC4v4 model leads to an average underestimation of 33% of the chlorophyll concentration. For the lagoon waters, OC4v4 performed inadequately because the backscattering coefficient, highly correlated with turbidity and suspended matter (R(2)=0.98), was poorly correlated to chlorophyll (R(2)=0.42). The OC4v4 performance was better in deep lagoon waters for stations with a TDT index (Tchla x depth/turbidity) higher than 19 mg m(-2) NTU(-1) (R(2)=0.974, bias=10.2%). Global Imager Rrs provided a good estimate of Tchla (R(2)=0.79, N=28) in the deeper part of the lagoon.

Bio-optical properties of the marine cyanobacteria Trichodesmium spp.

Bio-optical spectral properties were determined on fresh suspensions of Trichodesmium spp. collected in a tropical lagoon and put in seawater tanks (total chlorophyll concentrations range between 0.1 and 3.8 mg m -3). The spectrum of the backscattering coefficient was a hyperbolic function with a slope of 1.2, often showing troughs at 440, 550 and 676 nm, due to absorption peaks of chlorophyll and phycoerythrin. The absorption spectrum computed with a specific beta correction for Trichodesmium, showed a blue to red ratio (B/R) equivalent to the one of a single colony (B/R=2), and also showed the double peak of mycosporine-like amino acids (MAAs, 330 and 360 nm). The CDOM absorption spectrum showed minor MAA peaks when cyanobacterial concentrations were above 1 mg Chl a m -3. The chlorophyll a-specific backscattering and absorption coefficients at 442 nm were respectively 0.0126 m 2 (mg.chl a) -1 and 0.027 m 2 (mg chl a) -1. Suspensions in tanks exhibited a high backscattering ratio at 660 nm (b˜ b=b bp/b p). The above-water reflectance spectrum clearly showed troughs at the wavelength of the pigment absorption peaks. Datasets of Trichodesmium normalized absorption, backscattering and reflectance spectra will allow its detection with future hyperspectral ocean colour sensors.

Remote sensing observations of biological material by LANDSAT along a tidal thermal front and their relevancy to the available field data

Abstract Two images recorded on two successive summer days by LANDSAT satellite over the western approaches to the English Channel show bright pattern of complex shape the origin of which is puzzling. Among the wavelength bands available on LANDSATs multispectral scanner, these patterns are apparent only in the green region of the spectrum, and they are located towards the stratified side of a well marked tidal thermal front. Spectral signature analysis and available knowledge on hydrography and plankton in the area are used to derive a proposed interpretation. Phytoplankton would accordingly be the best candidate for being responsible for the observed patterns.

Chlorophylls and Phycoerythrins as Markers of Environmental Forcings Including Cyclone Erica Effect (March 2003) on Phytoplankton in the Southwest Lagoon of New Caledonia and Oceanic Adjacent Area

Spatio-temporal variations of chlorophylls and phycoerythrins, inferred by spectrofluorometric methods, were studied from April 2002 to June 2003 in the southwest lagoon and oceanic waters of New Caledonia. Trade winds blew 75% of the time and appeared as the main factor influencing surface Tchl (sum of monovinyl- and divinyl-chlorophyll ) variations in the ocean, near the barrier reef. Lagoon and oceanic waters differed in the composition of picoplanktonic cyanobacteria with a relative dominance of Prochlorococcus and high-phycourobilin Synechococcus in the ocean, and a relative dominance of high-phycoerythrobilin Synechococcus in the lagoon. Main pigment variations in the lagoon were associated with cyclone Erica in March 2003 and showed a 5-6 fold Tchl increase around Noumea. The cyclone stimulated mainly diatom growth as indicated by the high chlorophyll ()/chlorophyll ratio and by the lowest values for the other pigment ratios. The relative importance of divinyl-chlorophyll concentration and fluorescence excitation spectra of phycoerythrins appeared as useful tools for characterizing lagoon-ocean exchanges.

The Coral Sea: Physical Environment, Ecosystem Status and Biodiversity Assets

The Coral Sea, located at the southwestern rim of the Pacific Ocean, is the only tropical marginal sea where human impacts remain relatively minor. Patterns and processes identified within the region have global relevance as a baseline for understanding impacts in more disturbed tropical locations. Despite 70 years of documented research, the Coral Sea has been relatively neglected, with a slower rate of increase in publications over the past 20 years than total marine research globally. We review current knowledge of the Coral Sea to provide an overview of regional geology, oceanography, ecology and fisheries. Interactions between physical features and biological assemblages influence ecological processes and the direction and strength of connectivity among Coral Sea ecosystems. To inform management effectively, we will need to fill some major knowledge gaps, including geographic gaps in sampling and a lack of integration of research themes, which hinder the understanding of most ecosystem processes.

Modelling the impact of a La Niña event on a South West Pacific Lagoon

In view of increasing environmental awareness and biodiversity conservation, understanding the main forcing mechanism driving biogeochemical cycles in coral reefs and lagoon coastal areas is a priority. La Niña events cause unbalanced situations in the Equatorial Pacific and result in enhanced precipitation in South West Pacific coastal areas. We investigated the impact of heavy rainfalls during the 2008 La Niña event on the New Caledonia lagoon using a 3D coupled on-line hydrodynamic-biogeochemical model. Simulations and data showed that the whole lagoon was impacted by river inputs and stronger hydrodynamics, enhancing chlorophyll-a concentration by a factor between 1.7 and 1.9. The coupled model provided new insights into plume transport, highlighting that eastern plumes can be advected northwards or can reach the South West Lagoon, depending on the balance between regional, tide-induced, and wind-induced surface currents. It also provided a synoptic view of lagoon biogeochemical-hydrodynamic response, when remote sensing data are not available due to cloud coverage.

Atmospheric correction and inherent optical property estimation in the southwest New Caledonia lagoon using AVNIR-2 high-resolution data.

Retrievals of inherent optical properties (IOPs) and chlorophyll-a concentration (Chla) were investigated for AVNIR-2 images with 30 m spatial resolution and four bands in the southwest tropical lagoon of New Caledonia. We corrected the atmospheric and sea-surface reflectance iteratively through the retrieval of IOPs. After an additional correction of seafloor reflectance, the estimated IOPs and Chla agreed well with the in situ measurements even in the lagoon areas. This study provides a method to allow a local optimal estimation of IOPs and Chla with a high-resolution sensor by preparing the candidate spectra for the target areas.