Celia James

Mapping Co, a gene controlling the columnar phenotype of apple, with molecular markers

The columnar phenotype is a very valuable genetic resource for apple breeding because of its compact growth form determined by the dominant gene Co. Using bulked segregant analysis combined with several DNA molecular marker techniques to screen the F1 progeny of Spur Fuji × Telamon (heterozygous for Co), 9 new DNA markers (6 RAPD, 1 AFLP and 2 SSRs) linked to the Co gene were identified. A total of 500 10-mer random primers, 56 pairs of selective AFLP primers and 8 SSR primer pairs were screened. One RAPD marker S1142682, and the AFLP marker, E-ACT/M-CTA346, were converted into SCAR markers designated SCAR682 and SCAR216, respectively. These markers will enable early selection in progenies where Co is difficult to identify. The Co gene was located between the SSR markers CH03d11 and COL on linkage group 10 of the apple genetic linkage map. Finally, a local genetic map of the region around the Co gene was constructed by linkage analysis of the nine new markers and three markers developed earlier.

Genetic variation of Prunus cerasoides D. Don, a framework tree species in northern Thailand

Prunus cerasoides D. Don has been identified as an excellent ‘framework tree species’ for restoring evergreen forest in seasonally dry tropical forestlands. Here we describe the level of microsatellite variation in P. cerasoides trees within and among three National Parks in northern Thailand: Doi Suthep-Pui, Doi Inthanon and Doi Ang Khang, using published primers developed for peach, sweet cherry and sour cherry. The five microsatellite loci employed detected a total of 41 alleles, with the average number of alleles per locus per study site ranging from 2.7 to 8.0 (n = 82). The value of FST over the three sites was 0.115, indicating that while the majority of genetic diversity may be contained within sites, they should be considered as genetically distinct. The implications of this for seed collection of this species for forest restoration are discussed.

Genetic diversity of Castanopsis acuminatissima (Bl.) A. DC. in northern Thailand and the selection of seed trees for forest restoration

Castanopsis acuminatissima (Bl.) A. DC. is one of a number of ‘framework species’ which are being planted to restore seasonally dry tropical forests in northern Thailand. This study describes the level of microsatellite variation within and among three populations of this species in three National Parks in northern Thailand: Doi Suthep-Pui, Doi Inthanon and Jae Sawn, using published primers developed for Castanopsis cuspidata var. sieboldii Nakai. The five microsatellite loci employed in this study detected a total of 54 alleles (n = 72). The informativeness of the microsatellite loci varied from six to 18 alleles, with an average of 10.8 alleles found over all loci. The mean observed heterozygosities in the three populations showed no significant deviations from Hardy-Weinberg expectations. The vast majority of genetic diversity was contained within the populations, with no significant differentiation between them (FST = 0.006). Algorithms were designed to capture microsatellite diversity, and the rationale for using microsatellite markers to inform genetic conservation is discussed. The implications for seed collection of C. acuminatissima for forest restoration are also discussed.