Cèlia Marrasé

Changes in Bacterioplankton Composition under Different Phytoplankton Regimens

ABSTRACT The results of empirical studies have revealed links between phytoplankton and bacterioplankton, such as the frequent correlation between chlorophyll a and bulk bacterial abundance and production. Nevertheless, little is known about possible links at the level of specific taxonomic groups. To investigate this issue, seawater microcosm experiments were performed in the northwestern Mediterranean Sea. Turbulence was used as a noninvasive means to induce phytoplankton blooms dominated by different algae. Microcosms exposed to turbulence became dominated by diatoms, while small phytoflagellates gained importance under still conditions. Denaturing gradient gel electrophoresis (DGGE) of 16S rRNA gene fragments showed that changes in phytoplankton community composition were followed by shifts in bacterioplankton community composition, both as changes in the presence or absence of distinct bacterial phylotypes and as differences in the relative abundance of ubiquitous phylotypes. Sequencing of DGGE bands showed that four Roseobacter phylotypes were present in all microcosms. The microcosms with a higher proportion of phytoflagellates were characterized by four phylotypes of the Bacteroidetes phylum: two affiliated with the family Cryomorphaceae and two with the family Flavobacteriaceae. Two other Flavobacteriaceae phylotypes were characteristic of the diatom-dominated microcosms, together with one Alphaproteobacteria phylotype (Roseobacter) and one Gammaproteobacteria phylotype (Methylophaga). Phylogenetic analyses of published Bacteroidetes 16S rRNA gene sequences confirmed that members of the Flavobacteriaceae are remarkably responsive to phytoplankton blooms, indicating these bacteria could be particularly important in the processing of organic matter during such events. Our data suggest that quantitative and qualitative differences in phytoplankton species composition may lead to pronounced differences in bacterioplankton species composition.

Helical Lévy walks: Adjusting searching statistics to resource availability in microzooplankton

The searching trajectories of different animals can be described with a broad class of flight length (lj) distributions with P(lj) = lj–μ. Theoretical studies have shown that changes in these distributions (i.e., different μ values) are key to optimizing the long-term encounter statistics under certain searcher–resource scenarios. In particular, they predict the advantage of Lévy searching (μ ≈ 2) over Brownian motion (μ ≥ 3) for low-prey-density scenarios. Here, we present experimental evidence of predicted optimal changes in the flight-time distribution of a predators walk in response to gradual density changes of its moving prey. Flight times of the dinoflagellate Oxyrrhis marina switched from an exponential to an inverse square power-law distribution when the prey (Rhodomonas sp.) decreased in abundance. Concomitantly, amplitude and frequency of the short-term helical path increased. The specific biological mechanisms involved in these searching behavioral changes are discussed. We suggest that, in a three-dimensional environment, a stronger helical component combined with a Lévy walk searching strategy enhances predators encounter rates. Our results support the idea of universality of the statistical laws in optimal searching processes despite variations in the biological details of the organisms.

Net Production and Consumption of Fluorescent Colored Dissolved Organic Matter by Natural Bacterial Assemblages Growing on Marine Phytoplankton Exudates

ABSTRACT An understanding of the distribution of colored dissolved organic matter (CDOM) in the oceans and its role in the global carbon cycle requires a better knowledge of the colored materials produced and consumed by marine phytoplankton and bacteria. In this work, we examined the net uptake and release of CDOM by a natural bacterial community growing on DOM derived from four phytoplankton species cultured under axenic conditions. Fluorescent humic-like substances exuded by phytoplankton (excitation/emission [Ex/Em] wavelength, 310 nm/392 nm; Cobles peak M) were utilized by bacteria in different proportions depending on the phytoplankton species of origin. Furthermore, bacteria produced humic-like substances that fluoresce at an Ex/Em wavelength of 340 nm/440 nm (Cobles peak C). Differences were also observed in the Ex/Em wavelengths of the protein-like materials (Cobles peak T) produced by phytoplankton and bacteria. The induced fluorescent emission of CDOM produced by prokaryotes was an order of magnitude higher than that of CDOM produced by eukaryotes. We have also examined the final compositions of the bacterial communities growing on the exudates, which differed markedly depending on the phytoplankton species of origin. Alteromonas and Roseobacter were dominant during all the incubations on Chaetoceros sp. and Prorocentrum minimum exudates, respectively. Alteromonas was the dominant group growing on Skeletonema costatum exudates during the exponential growth phase, but it was replaced by Roseobacter afterwards. On Micromonas pusilla exudates, Roseobacter was replaced by Bacteroidetes after the exponential growth phase. Our work shows that fluorescence excitation-emission matrices of CDOM can be a helpful tool for the identification of microbial sources of DOM in the marine environment, but further studies are necessary to explore the association of particular bacterial groups with specific fluorophores.

Planktonic ciliate distribution relative to a deep chlorophyll maximum: Catalan Sea, N.W. Mediterranean, June 1993

Vertical distributions and relative contributions of distinct trophic guilds of ciliates were investigated in an oligotrophic system with a deep chlorophyll maximum (DCM) in early summer. Ciliates were classified as heterotrophic: micro and nano ciliates, tintinnids and predacious forms or photosynthetic: large mixotrophic oligotrichs (Laboea strobilia, Tontonia spp.), and the autotrophic Mesodinium rubrum. Variability between vertical profiles (0–200 m) was relatively low with station to station differences (C.V.s of ∼30%) generally larger than temporal (1–4 day) differences (C.V.s of ∼15%), for integrated concentrations. Total ciliate biomass, based on volume estimates integrated from 0–80 m, averaged ∼ 125 mg C m−2, compared to ∼35 mg m−2 for chlorophyll a (chl a), yielding a ciliate to chi ratio of 3.6, well within the range of 1 to 6 reported for the euphotic zones of most oceanic systems. Heterotrophic ciliate concentrations were correlated with chl a concentration (r = 0.83and0.82, biomass and cells l−1, respectively) and averaged ∼230 cells 1−1 in near surface samples (chl a = 0.1 μg 1−1) to ∼850 cells 1−1 at 50 m depth, coinciding with the DCM (chl a = 1–2 μg 1−1). Tintinnid ciliates were diverse (36 species in 19 genera) but a minor part of heterotrophic ciliates. Nanociliates represented <1% of heterotrophic or total ciliate biomass, in contrast to reports on near-shore ciliate communities. Predacious ciliates were very rare. Large mixotrophic oligotrichs, while a minor portion of ciliate cells l−1, were an important part of total ciliate biomass, representing 63% at 5 m and 21 % integrated over 0–80 m. Mesodinium rubrum was found throughout the water column, usually with a sub-surface peak (∼100 cells 1−1). Concentrations of neither large mixotrophic oligotrichs, nor the autotrophic M. rubrum, were correlated with chl a. Estimates of the contribution of photosynthetic ciliate chi (mixotrophic and autotrophic) to total chl a (based on literature values of chla cell−1) ranged from ∼20% in some surface samples to <0.5% in the DCM.

Phytoplankton biomass and productivity off the Namibian Coast

During September–October 1985 and April 1986, several transects of oceanographic stations were occupied off the coast of Namibia between 17°30′ and 26°30′S. During the 1985 cruise, active upwelling was apparent in all sections, but during 1986, upwelling was moderate. On both surveys, lowest inshore temperatures were found around 26°S. In spring 1985, chlorophyll-rich tongues were recorded off Luderitz and Meob Bay and north of Walvis Bay, between 23 and 20°30′S. Concentrations of chlorophyll a were, in general, fairly homogeneous throughout a layer of 40–60 m depth, and correlation between surface chlorophyll a and integrated values for the water column was good. In April 1986, concentrations of chlorophyll a of 40 mg·m−3 were found off Walvis Bay; from there, bands of surface chlorophyll a concentrations exceeding 10 mg·m−3 extended towards the north and south-west. The vertical sections in April 1986 showed a certain degree of stratification, and in the northern one (at 17°30′S) there was a marked subs...

Water mass age and aging driving chromophoric dissolved organic matter in the dark global ocean

The omnipresence of chromophoric dissolved organic matter (CDOM) in the open ocean enables its use as a tracer for biochemical processes throughout the global overturning circulation. We made an inventory of CDOM optical properties, ideal water age (τ), and apparent oxygen utilization (AOU) along the Atlantic, Indian, and Pacific Ocean waters sampled during the Malaspina 2010 expedition. A water mass analysis was applied to obtain intrinsic, hereinafter archetypal, values of τ, AOU, oxygen utilization rate (OUR), and CDOM absorption coefficients, spectral slopes and quantum yield for each one of the 22 water types intercepted during this circumnavigation. Archetypal values of AOU and OUR have been used to trace the differential influence of water mass aging and aging rates, respectively, on CDOM variables. Whereas the absorption coefficient at 325 nm (a325) and the fluorescence quantum yield at 340 nm (Φ340) increased, the spectral slope over the wavelength range 275–295 nm (S275–295) and the ratio of spectral slopes over the ranges 275–295 nm and 350–400 nm (SR) decreased significantly with water mass aging (AOU). Combination of the slope of the linear regression between archetypal AOU and a325 with the estimated global OUR allowed us to obtain a CDOM turnover time of 634 ± 120 years, which exceeds the flushing time of the dark ocean (>200 m) by 46%. This positive relationship supports the assumption of in situ production and accumulation of CDOM as a by-product of microbial metabolism as water masses turn older. Furthermore, our data evidence that global-scale CDOM quantity (a325) is more dependent on aging (AOU), whereas CDOM quality (S275–295, SR, Φ340) is more dependent on aging rate (OUR).

Succession patterns of phytoplankton blooms: directionality and influence of algal cell size

Using four replicate microcosms in the laboratory, we induced a phytoplankton bloom by enclosing a natural community sampled from Masnou Harbor (N.E. Spain) in November 1987, and examined the pattern of algal succession during the bloom. Good replicability of the temporal patterns of the community biomass and the abundance of most species demonstrated that succession was a directional, non-random process. The successional pathway observed (small flagellates » small centric diatoms » small flagellates) resembled that observed by other authors studying phytoplankton blooms. This pattern differed from previous models of algal succession in that dinoflagellates never comprised a substantial fraction of the community biomass, and in that algal cell size did not tend to increase along the successional sequence. Algal cell size, however, was an important determinant of phytoplankton community structure, since it constrained the density, but not the biomass, achievable by the different species. We suggest that there is not a single, general pattern of phytoplankton succession, but that distinction should be made, at least between seasonal and bloom patterns of phytoplankton succession.

Microbially-Mediated Fluorescent Organic Matter Transformations in the Deep Ocean. Do the Chemical Precursors Matter?

The refractory nature of marine dissolved organic matter (DOM) increases while it travels from surface waters to the deep ocean. This resistant fraction is in part composed of fluorescent humic-like material, which is relatively difficult to metabolize by deep water prokaryotes, and it can also be generated by microbial activity. It has been recently argued that microbial production of new fluorescent DOM (FDOM) requires the presence of humic precursors in the surrounding environment. In order to experimentally test how the chemical quality of the available organic compounds influences the production of new FDOM, three experiments were performed with bathypelagic Atlantic waters. Microbial communities were incubated in three treatments which differed in the quality of the organic compounds added: i) glucose and acetate; ii) glucose, acetate, essential amino acids and humic acids; and iii) humic acids alone. The response of the prokaryotes and the production of FDOM were simultaneously monitored. Prokaryotic abundance was highest in treatments where labile compounds were added. The rate of humic-like fluorescence production scaled to prokaryotic abundance varied depending on the quality of the additions. The precursor compounds affected the generation of new humic-like FDOM, and the cell-specific production of this material was higher in the incubations amended with humic precursors. Furthermore, we observed that the protein-like fluorescence decreased only when fresh amino acids were added. These findings contribute to the understanding of FDOM variability in deep waters and provide valuable information for studies where fluorescent compounds are used in order to track water masses and/or microbial processes.

Changes in bacterial metabolism as a response to dissolved organic matter modification during protozoan grazing in coastal Cantabrian and Mediterranean waters

We explored how marine dissolved organic matter (DOM) altered by bacterial growth and protozoan grazing modify the metabolism of Southeastern Cantabrian Sea (CS) and NW Mediterranean Sea (MS) coastal bacterial communities. Major metabolic features were measured in treatments with half of the natural water replaced by water with different DOM quality, characterized by fluorescent DOM analysis and collected from key times of the predator-prey curve. In both ecosystems, protozoan-altered DOM led to similar increases in bacterial carbon demand (238% and 213%) and decreases in bacterial growth efficiency (BGE: 56% for the CS and 46% for the MS). These low BGEs were caused by similar bacterial production but much higher bacterial respiration rates, which in turn were positively related to aminopeptidase activity. However, in the CS bacterial community dominated by Bacteroidetes (41%), the enhanced hydrolytic activity was produced at a lower metabolic cost than in the MS, dominated by SAR11 (47%), which suggests a better adaptation of Bacteroidetes to the DOM altered during protozoan grazing. These results highlight protozoan grazing as a relevant factor influencing BGE in coastal ecosystems, and relate bacterial community composition to the major metabolic processes that result after a change in the quality of marine DOM.

Anthropogenic versus mineral aerosols in the stimulation of microbial planktonic communities in coastal waters of the northwestern Mediterranean Sea.

The atmosphere of the northwestern (NW) Mediterranean Sea is affected by continuous inputs of anthropogenic aerosols and episodic Saharan dust events. These atmospheric inputs deliver to the surface waters high amounts of macronutrients and trace metals that can constitute their main source at certain times of the year. The effect of both anthropogenic and crustal particles over the autotrophic and heterotrophic planktonic community assembles was evaluated through three microcosm experiments carried out in the summer of 2013 and in the winter and spring of 2014 at an urban coastal location of the NW Mediterranean (Barcelona, Spain). Particles were added to seawater at a concentration of 0.8mgl-1. The results showed that (i) a greater stimulation of the whole community was observed in summer and spring than in winter; (ii) both kinds of aerosols produced an increase in the growth of phytoplankton, although the stimulation of nanoeukaryotes was significantly larger with anthropogenic aerosols; and (iii) bacterial abundance increased more with mineral dust, whereas bacterial production was more stimulated with anthropogenic inputs. Overall, the effect of atmospheric particles was dependent on their composition and solubility in seawater, as well as on the initial biogeochemical conditions present in the seawater and had the potential to change the net metabolic balance of the microbial planktonic community.