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Dive into the research topics where Cem Yolcu is active.

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Featured researches published by Cem Yolcu.


Physical Review E | 2012

Effective field theory approach to fluctuation-induced forces between colloids at an interface.

Cem Yolcu; Ira Z. Rothstein; Markus Deserno

We discuss an effective field theory (EFT) approach to the computation of fluctuation-induced interactions between particles bound to a thermally fluctuating fluid surface controlled by surface tension. By describing particles as points, EFT avoids computing functional integrals subject to difficult constraints. Still, all information pertaining to particle size and shape is systematically restored by amending the surface Hamiltonian with a derivative expansion. The free energy is obtained as a cumulant expansion, for which straightforward techniques exist. We derive a completedescription for rigid axisymmetric objects, which allows us to develop a full asymptotic expansion-in powers of the inverse distance-for the pair interaction. We also demonstrate by a few examples the efficiency with which multibody interactions can be computed. Moreover, although the main advantage of the EFT approach lies in explicit computation, we discuss how one can infer certain features of cases involving flexible or anisotropic objects. The EFT description also permits a systematic computation of ground-state surface-mediated interactions, which we illustrate with a few examples.


Physical Review E | 2016

NMR signal for particles diffusing under potentials: From path integrals and numerical methods to a model of diffusion anisotropy.

Cem Yolcu; Muhammet Memiç; Kadir Şimşek; Carl-Fredrik Westin; Evren Özarslan

We study the influence of diffusion on NMR experiments when the molecules undergo random motion under the influence of a force field and place special emphasis on parabolic (Hookean) potentials. To this end, the problem is studied using path integral methods. Explicit relationships are derived for commonly employed gradient waveforms involving pulsed and oscillating gradients. The Bloch-Torrey equation, describing the temporal evolution of magnetization, is modified by incorporating potentials. A general solution to this equation is obtained for the case of parabolic potential by adopting the multiple correlation function (MCF) formalism, which has been used in the past to quantify the effects of restricted diffusion. Both analytical and MCF results were found to be in agreement with random walk simulations. A multidimensional formulation of the problem is introduced that leads to a new characterization of diffusion anisotropy. Unlike the case of traditional methods that employ a diffusion tensor, anisotropy originates from the tensorial force constant, and bulk diffusivity is retained in the formulation. Our findings suggest that some features of the NMR signal that have traditionally been attributed to restricted diffusion are accommodated by the Hookean model. Under certain conditions, the formalism can be envisioned to provide a viable approximation to the mathematically more challenging restricted diffusion problems.


Frontiers in Marine Science | 2017

Effective Potential for Magnetic Resonance Measurements of Restricted Diffusion

Evren Özarslan; Cem Yolcu; Magnus Herberthson; Carl-Fredrik Westin; Hans Knutsson

The signature of diffusive motion on the NMR signal has been exploited to characterize the mesoscopic structure of specimens in numerous applications. For compartmentalized specimens comprising isolated subdomains, a representation of individual pores is necessary for describing restricted diffusion within them. When gradient waveforms with long pulse durations are employed, a quadratic potential profile is identified as an effective energy landscape for restricted diffusion. The dependence of the stochastic effective force on the center-of-mass position is indeed found to be approximately linear (Hookean) for restricted diffusion even when the walls are sticky. We outline the theoretical basis and practical advantages of our picture involving effective potentials.


Physical Review E | 2016

Thermal response of nonequilibrium RC circuits

Marco Baiesi; Sergio Ciliberto; Gianmaria Falasco; Cem Yolcu

We analyze experimental data obtained from an electrical circuit having components at different temperatures, showing how to predict its response to temperature variations. This illustrates in detail how to utilize a recent linear response theory for nonequilibrium overdamped stochastic systems. To validate these results, we introduce a reweighting procedure that mimics the actual realization of the perturbation and allows extracting the susceptibility of the system from steady-state data. This procedure is closely related to other fluctuation-response relations based on the knowledge of the steady-state probability distribution. As an example, we show that the nonequilibrium heat capacity in general does not correspond to the correlation between the energy of the system and the heat flowing into it. Rather, also nondissipative aspects are relevant in the nonequilibrium fluctuation-response relations.


Physical Review B | 2010

Frenkel-Kontorova models, pinned particle configurations, and Burgers shocks

Muhittin Mungan; Cem Yolcu

We analyze the relationship between the lowest energy configurations of an infinite harmonic chain of particles in a periodic potential and the evolution of characteristics in a periodically-forced inviscid Burgers equation. The shock discontinuities in the the Burgers evolution arise from thermodynamical considerations and play an important role as they separate out flows related to lowest energy configurations from those associated with higher energies. We study in detail the exactly solvable case of an external potential consisting of parabolic segments, and calculate analytically the lowest energy configurations, as well as excited states containing discommensurations.


Frontiers of Physics in China | 2018

Influence of the Size and Curvedness of Neural Projections on the Orientationally Averaged Diffusion MR Signal

Evren Özarslan; Cem Yolcu; Magnus Herberthson; Hans Knutsson; Carl-Fredrik Westin

Neuronal and glial projections can be envisioned to be tubes of infinitesimal diameter as far as diffusion magnetic resonance (MR) measurements via clinical scanners are concerned. Recent experimental studies indicate that the decay of the orientationally-averaged signal in white-matter may be characterized by the power-law, Ē(q) ∝ q-1, where q is the wavenumber determined by the parameters of the pulsed field gradient measurements. One particular study by McKinnon et al. [1] reports a distinctively faster decay in gray-matter. Here, we assess the role of the size and curvature of the neurites and glial arborizations in these experimental findings. To this end, we studied the signal decay for diffusion along general curves at all three temporal regimes of the traditional pulsed field gradient measurements. We show that for curvy projections, employment of longer pulse durations leads to a disappearance of the q-1 decay, while such decay is robust when narrow gradient pulses are used. Thus, in clinical acquisitions, the lack of such a decay for a fibrous specimen can be seen as indicative of fibers that are curved. We note that the above discussion is valid for an intermediate range of q-values as the true asymptotic behavior of the signal decay is Ē(q) ∝ q-4 for narrow pulses (through Debye-Porod law) or steeper for longer pulses. This study is expected to provide insights for interpreting the diffusion-weighted images of the central nervous system and aid in the design of acquisition strategies.


Physical Review E | 2012

Membrane-mediated interactions between rigid inclusions: an effective field theory.

Cem Yolcu; Markus Deserno


Advances in Colloid and Interface Science | 2014

The Effective Field Theory approach towards membrane-mediated interactions between particles

Cem Yolcu; Robert C. Haussman; Markus Deserno


EPL | 2011

Effective field theory approach to Casimir interactions on soft matter surfaces

Cem Yolcu; Ira Z. Rothstein; Markus Deserno


Thin Solid Films | 2012

Fabrication of metallic nanoparticles by spinodal dewetting of thin films: A high-throughput approach

William D. Michalak; James B. Miller; Cem Yolcu; Andrew J. Gellman

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Markus Deserno

Carnegie Mellon University

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Carl-Fredrik Westin

Brigham and Women's Hospital

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Ira Z. Rothstein

Carnegie Mellon University

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Andrew J. Gellman

Carnegie Mellon University

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James B. Miller

Carnegie Mellon University

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