Changyong Huang

Substrate utilization pattern, biomass and activity of microbial communities in a sequence of heavy metal-polluted paddy soils

Abstract The microbial biomass, activity and substrate utilization pattern of seven Chinese paddy soils with different heavy metal concentrations in the vicinity of a Cu–Zn smelter was investigated. Microbial biomass and basal respiration were negatively affected by the elevated metal levels. Two important biological parameters, namely, the microbial biomass-C (Cmic)/organic C (Corg) ratio and metabolic quotient were closely correlated to heavy metal stress. There was a significant decrease in the Cmic/Corg ratio and an increase in the metabolic quotient with increasing metal concentration. Multivariate analysis of sole carbon source utilization pattern demonstrated that heavy metal pollution had a significant impact on microbial community structure and there was a threshold metal concentration for substrate utilization pattern. However, the average well colour development (AWCD) of the carbon sources in Biolog plates did not vary in a consistent manner with the microbial biomass or heavy metal concentration.

The uptake of copper by plants dominantly growing on copper mining spoils along the Yangtze River, the People's Republic of China

Elsholtzia haichowensis Sun., Commelina communis Linn., and Rumex acetosa Linn. are the dominant species that vastly grow over the copper mining spoil heaps and copper-contaminated soil of the areas along the middle and lower streams of the Yangtze River. Each has its own ecological habits. Chemical analytical data show that these plants can accumulate copper to various extents, depending on the copper content of the supporting soils and plant species. The highest concentration copper was found in R. acetosa with the leaf copper concentration ranging from 340 to 1102 mg/kg and averaging 601 mg/kg (dry weight basis). C. communis also contained high copper concentration in its leaves ranging from 19 to 587 mg/kg and averaging 157 mg/kg. E. haichowensis has the lowest copper concentration in its leaves from 18 to 391 mg/kg and averaging 102 mg/kg. The copper content of the soils supporting all the species varies to a great extent from place to place. All these lines of evidence suggest that E. haichowensis, C. communis, and R. acetosa can serve as pioneer species for reclamation of copper mined land and can be used as model plants for investigation of plant tolerance mechanisms, and geochemical prospecting.

Soil Microbial Community Structure in Diverse Land Use Systems:A Comparative Study Using Biolog,DGGE,and PLFA Analyses

Biolog, 16S rRNA gene denaturing gradient gel electrophoresis (DGGE), and phospholipid fatty acid (PLFA) analyses were used to assess soil microbial community characteristics in a chronosequence of tea garden systems (8-, 50-, and 90 year-old tea gardens), an adjacent wasteland, and a 90-year-old forest. Biolog analysis showed that the average well color development (AWCD) of all carbon sources and the functional diversity based on the Shannon index decreased (P forest > tea garden. For the DGGE analysis, the genetic diversity based on the Shannon index was significantly lower in the tea garden soils than in the wasteland. However, compared to the 90-year-old forest, the tea garden soils showed significantly higher genetic diversity. PLFA analysis showed that the ratio of Gram positive bacteria to Gram negative bacteria was significantly higher in the tea garden soils than in the wasteland, and the highest value was found in the 90-year-old forest. Both the fungal PLFA and the ratio of fungi to bacteria were significantly higher in the three tea garden soils than in the wasteland and forest, indicating that fungal PLFA was significantly affected by land-use change. Based on cluster analysis of the soil microbial community structure, all three analytical methods showed that land-use change had a greater effect on soil microbial community structure than tea garden age.

Microbial Biomass, N Mineralization and Nitrification, Enzyme Activities, and Microbial Community Diversity in Tea Orchard Soils

Understanding the chronological changes in soil microbial and biochemical properties of tea orchard ecosystems after wasteland has been reclaimed is important from ecological, environmental, and management perspectives. In this study, we determined microbial biomass, net N mineralization, and nitrification, enzyme (invertase, urease, proteinase, and acid phosphatase) activities, microbial community diversity assessed by denaturing gradient gel electrophoresis (DGGE) of 16S rDNA polymerase chain reaction (PCR) products, and related ecological factors in three tea orchard systems (8-, 50-, and 90-year-old tea orchards), adjacent wasteland and 90-year-old forest. Soil microbial biomass C (Cmic) and activity, i.e., soil basal respiration (Rmic), microbial biomass C as a percent of soil organic C (Cmic/Corg), N mineralization, invertase, urease, proteinase, and acid phosphatase, significantly increased after wasteland was reclaimed; however, with the succeeding development of tea orchard ecosystems, a decreasing trend from the 50- to 90-year-old tea orchard became apparent. Soil net nitrification showed an increasing trend from the 8- to 50-year-old tea orchard and then a decreasing trend from the 50- to 90-year-old tea orchard, and was significantly higher in the tea orchards compared to the wasteland and forest. Urea application significantly stimulated soil net nitrification, indicating nitrogen fertilizer application may be an important factor leading to high-nitrification rates in tea orchard soils. The Shannon’s diversity index (H) and richness (S) based on DGGE profiles of 16S rRNA genes were obviously lower in all three tea orchards than those in the wasteland; nevertheless, they were significantly higher in all three tea orchards than those in the forest. As for the three tea orchard soils, comparatively higher community diversity was found in the 50-year-old tea orchard.

Microbial biomass phosphorus and its significance in predicting phosphorus availability in red soils

Abstract Red soils are widespread in Southern China and other subtropical regions in the world. An improved management of phosphorus (P) is crucial for sustainable agriculture and environmental quality in red soil regions. Plant‐availability of P in red soils mainly depends on fertilization and biological cycling. Both laboratory analyses and greenhouse experiments were conducted to examine the relationships between plant P uptake, chemical index of P, and microbial biomass P in red soils with different fertility levels. Microbial biomass P ranged from 2.1 to 43 mg kg‐1 in the red soils and was significantly correlated with total P (r=0.84*), organic P (r=0.87*), or Bray I extractable P (r=0.94**). Extractable P plus organic carbon accounted for >85% of the variation in microbial biomass P in the red soils. The significant relationship between microbial biomass P and extractable P suggests that microbial biomass P has a great potential in predicting P‐supply ability in soil. Greenhouse experiments showed that there were close relationships between ryegrass dry matter yield, plant P uptake or tissue P concentration and microbial biomass P in the red soils. The corresponding correlation coefficients were 0.79*, 0.90*, and 0.91*, respectively. These results imply that microbial biomass P plays an important role in the availability of P to plants, and is a potential biological index of P availability in the red soils.

Assessing the effect of air-drying and storage on microbial biomass and community structure in paddy soils

To understand the effect of air-drying pre-treatment, refrigeration, and freezing storages on microbial biomass and community structure in paddy soils, we measured total phospholipid fatty acid (PLFA) and PLFA profile after five treatments, including flooded (F), flooded-freezing (FF), flooded-air-drying (FAD), flooded-air-drying-freezing (FADF), and flooded-air-drying-refrigeration (FADR). FF and FADF treatments were followed by freeze-drying before analyzing the total PLFA and PLFA profile. The results showed that FF and FADF treatments increased the content of polyunsaturated fatty acids, but decreased that of branched chain saturated fatty acids. FAD treatment increased the concentrations of bacterial, aerobic bacterial, stress, Type I methanotrophs, and Gram-negative bacterial biomarkers, while it decreased the concentration of hydroxy fatty acid group and the ratios of cyclopropyl saturated fatty acids to their monoenoic precursors. FADR significantly decreased the concentration of total PLFA and all PLFA groups except for the mono-unsaturated fatty acid group. Statistical analysis with correspondence analysis showed that air-drying and storage changed the microbial community structure, but the effect of air-drying on soil microbial community structure was more pronounced than that of freezing. These results indicated that deep freezing followed by freeze-drying may be the most recommendable procedure before soil biochemical analysis in flooded paddy soils.

Effect of lime application on microbial community in acidic tea orchard soils in comparison with those in wasteland and forest soils.

Lime application is a conventional technology to control acidification in tea orchard soils. We investigated the effect of lime application on soil microbial community diversity in the soils of three tea orchards, wasteland and forest. The BIOLOG data showed that both the average well color development of all carbon sources and the functional diversity index increased with the liming rate in the tea orchards and the forest, but decreased in the wasteland. The phospholipid fatty acid (PLFA) analysis showed that the structural diversity index of soil microbial community increased with the liming rate in all the tea orchards, the wasteland and the forest. Lime application also increased the soil-bacterial PLFA content in all the soils. Soil fungal and actinomycete PLFAs in the tea orchards showed an increasing trend from 0 to 3.2 g CaCO3/kg application and then a decreasing trend from 3.2 to 6.4 g CaCO3/kg application. The principal component analysis of BIOLOG and PLFA data suggested that lime application had a significant effect on soil microbial community structure, and land use had a greater effect on soil microbial community structure compared to lime application.

Tolerance of grasses to heavy metals and microbial functional diversity in soils contaminated with copper mine tailings

Copper (Cu) mine tailings, because of their high content of heavy metals, are usually hostile to plant colonization. A pot experiment was conducted to determine the tolerance of four forage grasses to heavy metals in Cu mine tailings and to examine the variation in the microbial functional diversity of soils from the tailing sites in southern China. All the four grass species survived on Cu mine tailings and Cu mine tailing-soil mixture. However, on pure mine tailings, the growth was minimal, whereas the growth was maximum for the control without mine tailings. The tolerance of grasses to heavy metals followed the sequence: Paspalum notatum > Festuca arundinacea > Lolium perenne > Cynodon dactylon. The planting of forage grasses enhanced the soil microbial biomass. The Biolog data indicated that the soil microbial metabolic profile values (average well color development, community richness, and Shannon index) of the four forage grasses also followed the sequence: P. notatum > F. arundinacea > L. perenne > C. dactylon .T hus,P. notatum, under the experimental conditions of this study, may be considered as the preferred plant species for revegetation of Cu mine tailing areas.

Nitrification potentials of Chinese tea orchard soils and their adjacent wasteland and forest soils.

To investigate the nitrifying activities of different soil types, soil samples collected from 8-, 50- and 90-year old tea orchards, the adjacent wasteland, and 90-year old forest were measured for their nitrification potentials using the conventional soil incubation and the liquid incubation method. Among different soil types, the nitrification potential of soil in tea orchards was higher than that of wasteland and forest soils. The slurry shaken liquid incubation method was confirmed to be more accurate and have reliable results than the soil incubation. Interestingly, experimental result revealed that the generally applied pH value of 7.2 for the liquid media was not the optimal pH for these acid soils with a strong buffer capacity. This suggested that tea orchard soils may have nitrifiers requiring pH-neutral condition for the best activity. Our data also showed that treatment with the commonly used nitrogen fertilizer urea significantly improved nitrification potential of the soils; such enhancement effect was stronger on all of three tea orchard soils than on wasteland and forest soils, and also stronger on the younger (8- and 50-year old) tea orchard soils than on the older one (90-year old).