Charles P. Scholes

Porphyrin–phospholipid liposomes permeabilized by near-infrared light

The delivery of therapeutic compounds to target tissues is a central challenge in treating disease. Externally controlled drug release systems hold potential to selectively enhance localized delivery. Here we describe liposomes doped with porphyrin–phospholipid that are permeabilized directly by near-infrared light. Molecular dynamics simulations identified a novel light-absorbing monomer esterified from clinically approved components predicted and experimentally demonstrated to give rise to a more stable porphyrin bilayer. Light-induced membrane permeabilization is enabled with liposomal inclusion of 10 molar % porphyrin–phospholipid and occurs in the absence of bulk or nanoscale heating. Liposomes reseal following laser exposure and permeability is modulated by varying porphyrin–phospholipid doping, irradiation intensity or irradiation duration. Porphyrin–phospholipid liposomes demonstrate spatial control of release of entrapped gentamicin and temporal control of release of entrapped fluorophores following intratumoral injection. Following systemic administration, laser irradiation enhances deposition of actively loaded doxorubicin in mouse xenografts, enabling an effective single-treatment antitumour therapy.

EPR–ENDOR Characterization of (17O, 1H, 2H) Water in Manganese Catalase and Its Relevance to the Oxygen-Evolving Complex of Photosystem II

The synthesis of efficient water-oxidation catalysts demands insight into the only known, naturally occurring water-oxidation catalyst, the oxygen-evolving complex (OEC) of photosystem II (PSII). Understanding the water oxidation mechanism requires knowledge of where and when substrate water binds to the OEC. Mn catalase in its Mn(III)-Mn(IV) state is a protein model of the OECs S(2) state. From (17)O-labeled water exchanged into the di-μ-oxo di-Mn(III,IV) coordination sphere of Mn catalase, CW Q-band ENDOR spectroscopy revealed two distinctly different (17)O signals incorporated in distinctly different time regimes. First, a signal appearing after 2 h of (17)O exchange was detected with a 13.0 MHz hyperfine coupling. From similarity in the time scale of isotope incorporation and in the (17)O μ-oxo hyperfine coupling of the di-μ-oxo di-Mn(III,IV) bipyridine model (Usov, O. M.; Grigoryants, V. M.; Tagore, R.; Brudvig, G. W.; Scholes, C. P. J. Am. Chem. Soc. 2007, 129, 11886-11887), this signal was assigned to μ-oxo oxygen. EPR line broadening was obvious from this (17)O μ-oxo species. Earlier exchange proceeded on the minute or faster time scale into a non-μ-oxo position, from which (17)O ENDOR showed a smaller 3.8 MHz hyperfine coupling and possible quadrupole splittings, indicating a terminal water of Mn(III). Exchangeable proton/deuteron hyperfine couplings, consistent with terminal water ligation to Mn(III), also appeared. Q-band CW ENDOR from the S(2) state of the OEC was obtained following multihour (17)O exchange, which showed a (17)O hyperfine signal with a 11 MHz hyperfine coupling, tentatively assigned as μ-oxo-(17)O by resemblance to the μ-oxo signals from Mn catalase and the di-μ-oxo di-Mn(III,IV) bipyridine model.

Effect of freezing conditions on distances and their distributions derived from Double Electron Electron Resonance (DEER): A study of doubly-spin-labeled T4 lysozyme

Pulsed dipolar ESR spectroscopy, DEER and DQC, require frozen samples. An important issue in the biological application of this technique is how the freezing rate and concentration of cryoprotectant could possibly affect the conformation of biomacromolecule and/or spin-label. We studied in detail the effect of these experimental variables on the distance distributions obtained by DEER from a series of doubly spin-labeled T4 lysozyme mutants. We found that the rate of sample freezing affects mainly the ensemble of spin-label rotamers, but the distance maxima remain essentially unchanged. This suggests that proteins frozen in a regular manner in liquid nitrogen faithfully maintain the distance-dependent structural properties in solution. We compared the results from rapidly freeze-quenched (≤100 μs) samples to those from commonly shock-frozen (slow freeze, 1 s or longer) samples. For all the mutants studied we obtained inter-spin distance distributions, which were broader for rapidly frozen samples than for slowly frozen ones. We infer that rapid freezing trapped a larger ensemble of spin label rotamers; whereas, on the time-scale of slower freezing the protein and spin-label achieve a population showing fewer low-energy conformers. We used glycerol as a cryoprotectant in concentrations of 10% and 30% by weight. With 10% glycerol and slow freezing, we observed an increased slope of background signals, which in DEER is related to increased local spin concentration, in this case due to insufficient solvent vitrification, and therefore protein aggregation. This effect was considerably suppressed in slowly frozen samples containing 30% glycerol and rapidly frozen samples containing 10% glycerol. The assignment of bimodal distributions to tether rotamers as opposed to protein conformations is aided by comparing results using MTSL and 4-Bromo MTSL spin-labels. The latter usually produce narrower distance distributions.

Spectroscopic and Computational Studies of Nitrite Reductase: Proton Induced Electron Transfer and Backbonding Contributions to Reactivity

A combination of spectroscopy and DFT calculations has been used to define the geometric and electronic structure of the nitrite bound type 2 (T2) copper site at high and low pH in nitrite reductase from Rhodobacter sphaeroides. At high pH there is no electron transfer from reduced type 1 (T1) to the nitrite bound T2 copper, while protonation triggers T1 --> T2 electron transfer and generation of NO. The DFT calculated reaction coordinate for the N-O bond cleavage in nitrite reduction by the reduced T2 copper suggests that the process is best described as proton transfer triggering electron transfer. Bidentate nitrite binding to copper is calculated to play a major role in activating the reductive cleavage of the nitrite bond through backbonding combined with stabilization of the (-)OH product by coordination to the Cu(2+).

Ubisemiquinone radicals from the cytochrome b−c1 complex of the mitochondrial electron transport chain—Demonstration of QP-S radical formation

Abstract Stable ubisemiquinone radical(s) in the cytochrome b − c 1 -II complex of bovine heart was observed following reduction by succinate in the presence of catalytic amounts of succinate dehydrogenase. The radical was abolished by addition of antimycin A, but a residual radical remained in the presence of excess exogenous Q2. The radical showed an EPR signal of g = 2.0046 ± .003 at X band (∼9.4 GHz) with no resolved hyperfine structure and had a line width of 8.1 ± .5 Gauss at 23°C. The Q band (35 GHz) spectra showed wellresolved g -anisotropy and had a field separation between derivative extrema of 26 ± 1 Gauss. This radical is evidently from QP-C. These observations substantiate that the radical is immobilized and bound to a protein. The QP-S radical was demonstrated in the cytochrome b - c 1 -II complex only in the presence of more than a catalytic amount of succinate dehydrogenase and cytochrome b - c 1 . This signal was not antimycin a inhibitory. The signal amplitude paralleled the reconstitutive enzymic activity of succinate-cytochrome c reductase from succinate dehydrogenase and the cytochrome b - c 1 -II complex.

Thermodynamic equilibrium between blue and green copper sites and the role of the protein in controlling function

A combination of spectroscopies and density functional theory calculations indicate that there are large temperature-dependent absorption spectral changes present in green nitrite reductases (NiRs) due to a thermodynamic equilibrium between a green and a blue type 1 (T1) copper site. The axial methionine (Met) ligand is unconstrained in the oxidized NiRs, which results in an enthalpically favored (ΔH ≈4.6 kcal/mol) Met-bound green copper site at low temperatures, and an entropically favored (TΔS ≈4.5 kcal/mol, at room temperature) Met-elongated blue copper site at elevated temperatures. In contrast to the NiRs, the classic blue copper sites in plastocyanin and azurin show no temperature-dependent behavior, indicating that a single species is present at all temperatures. For these blue copper proteins, the polypeptide matrix opposes the gain in entropy that would be associated with the loss of the weak axial Met ligand at physiological temperatures by constraining its coordination to copper. The potential energy surfaces of Met binding indicate that it stabilizes the oxidized state more than the reduced state. This provides a mechanism to tune down the reduction potential of blue copper sites by >200 mV.

Dielectric resonator‐based stopped‐flow electron paramagnetic resonance

We present the technical details and relevant performance aspects of a dielectric resonator‐based electron paramagnetic resonance probe for stopped‐flow kinetic studies. The major benefits of this system are: (1) It incorporates a small, high sensitivity resonator system that is insensitive to stopped‐flow induced noisy transients. (2) The resonator system is cheap, robust, and easily assembled. (3) It contains a microwave coupling scheme that provides finesse in tuning and freedom from microphonics.

Temperature dependence of the electron spin-lattice relaxation rate from pulsed EPR of CUA and heme a in cytochrome c oxidase.

This work shows the feasibility of using pulsed, saturation recovery EPR to study directly the magnetic relaxation properties of metal centers in cytochrome c oxidase in the 1.5-20 K range. Heme a and CuA both showed remarkably similar Tn temperature dependences in their spin-lattice relaxation rates. Either both are in environments with very similar protein backbone configurations (Stapleton, H.J., J.P. Allen, C.P. Flynn, D.G. Stinson, and S.R. Kurtz, 1980, Phys. Rev. Lett., 45:1456-1459; Allen, J.P., J.T. Colvin, D.G. Stinson, C.P. Flynn, and H.J. Stapleton, 1982, Biophys. J., 38:299-310), or the CuA is relaxed by nearby heme a. Spin-lattice relaxation of the nitrosylferrocytochrome a3 center in mixed valence oxidase showed enhancement of relaxation by a nearby paramagnetic center, most likely heme a.

Pulsed and continuous wave electron nuclear double resonance patterns of aquo protons coordinated in frozen solution to high spin MN2

For the water protons that coordinate to Mn2+, the frozen solution ENDOR (electron nuclear double resonance) spectra are made complex by the anisotropic electron–proton hyperfine interaction and by multiple contributions of the electron spin 5/2 manifold. A spin 5/2 Mn2+ ion having magnetic quantum numbers Ms=±1/2, ±3/2, ±5/2 and small zero‐field splittings has overlapping electron spin EPR transitions. Proton hyperfine couplings to each of these electron spin states have yielded overlapping ENDOR patterns whose interpretation is nontrivial, even in so simple a system as Mn2+ ion having hexaaquo coordination. We have experimentally obtained and theoretically explained these proton ENDOR patterns and in so doing have laid the foundation for interpreting and sorting out frozen solution ENDOR patterns in more complex (enzyme) environments. Pulsed and cw ENDOR experiments showed features of metal‐coordinated water protons occurring not only within a few MHz of the free proton frequency (as will happen for an ...

Tunable Q‐band resonator for low temperature electron paramagnetic resonance/electron nuclear double resonance measurements

We present a tunable Q‐band cavity for performing electron paramagnetic resonance and electron nuclear double resonance experiments at cryogenic temperatures. The resonator is a TE011 brass cavity with radio frequency and magnetic field modulation (100 kHz) posts inside the microwave resonator. These posts are located close to the central sample position and thereby enhance the effective modulation and radio frequency fields. The crucial novel design aspect is the provision for continuously tuning the cavity resonant frequency, even under pumped liquid helium conditions over a broad frequency range (≳2.0 GHz). Such a range will compensate for cooling‐induced cavity contraction, presence of cryogenic in the cavity, and insertion of high dielectric frozen aqueous samples. The tuning range is indispensable for use with present commercial Q‐band bridges whose low noise Gunn diode oscillators provide a small ∼50 MHz tuning range.