Cheng-Yuan Xu

Genetic diversity of alligator weed in China by RAPD analysis

Random amplified polymorphic DNA (RAPD) was applied to analyze geneticdiversity of an invasive weedy species, alligator weed (Alternantheraphiloxeroides (Martius) Grisebach), collected from eight differentsites in southern China. Amplified by 108 RAPD primers, 391 bands wereidentified from samples collected from three of the eight sites withconsiderably large spatial intervals, but no genetic variation was detectedamong the samples. A total number of 196 RAPD fragments were amplified from allsamples collected in the eight sites by 31 primers that produced the mostconsistent results, but no genetic variation was detected within or betweenpopulations. The molecular data indicated extremely low genetic diversity in thealligator weed. Given the fact that the alligator weed is a serious invasiveweed, and widely found in China, we consider that the low genetic diversity ofthe alligator weed does not affect the success of its expansion in China, andlow genetic diversity does not necessarily lead to endangered status of a plantspecies. In addition, molecular evidence from this study suggests that thealligator weed in southern China might originate from a very few clones or evenonly from a single clone. Therefore, the rapid range expansion of the alligatorweed is most likely the result of a massive vegetative propagation since it wasintroduced in China.

Phenotypic divergence during the invasion of Phyla canescens in Australia and France: evidence for selection-driven evolution

Rapid adaptive evolution has been advocated as a mechanism that promotes invasion. Demonstrating adaptive evolution in invasive species requires rigorous analysis of phenotypic shifts driven by selection. Here, we document selection-driven evolution of Phyla canescens, an Argentine weed, in two invaded regions (Australia and France). Invasive populations possessed similar or higher diversity than native populations, and displayed mixed lineages from different sources, suggesting that genetic bottlenecks in both countries might have been alleviated by multiple introductions. Compared to native populations, Australian populations displayed more investment in sexual reproduction, whereas French populations possessed enhanced vegetative reproduction and growth. We partitioned evolutionary forces (selection vs. stochastic events) using two independent methods. Results of both analyses suggest that the pattern of molecular and phenotypic variability among regions was consistent with selection-driven evolution, rather than stochastic events. Our findings indicate that selection has shaped the evolution of P. canescens in two different invaded regions.

Responses of soil respiration and its components to drought stress

PurposeClimate change is likely to increase both intensity and frequency of drought stress. The responses of soil respiration (Rs) and its components (root respiration, Rr; mycorrhizal respiration, Rm; and heterotrophic respiration, Rh) to drought stress can be different. This work aims to review the recent and current literature about the variations in Rs during the period of drought stress, to explore potential coupling processes and mechanisms between Rs and driving factors in the context of global climate change.Results and discussionThe sensitivity of soil respiration and its components to drought stress depended on the ecosystems and seasonality. Drought stress depressed Rs in mesic and xeric ecosystems, while it stimulated Rs in hydric ecosystems. The reductions in supply and availability of substrate decreased both auto- and heterotrophic respirations, leading to the temporal decoupling of root and mycorrhizal respiration from canopy photosynthesis as well as C allocation. Drought stress also reduced the diffusion of soluble C substrate, and activities of extracellular enzymes, consequently, limited microbial activity and reduced soil organic matter decomposition. Drought stress altered Q10 values and broke the coupling between temperature and soil respiration. Under drought stress conditions, Rm is generally less sensitive to temperature than Rr and Rh. Elevated CO2 concentration alleviated the negative effect of drought stress on soil respiration, principally due to the promotion of plant C assimilation subsequently, which increased substrate supply for respiration in both roots and soil microorganisms. Additionally, rewetting stimulated soil respiration dramatically in most cases, except for soil that experienced extreme drought stress periods. The legacy of drought stress can also regulate the response of soil respiration rate to rewetting events in terrestrial ecosystems through changing abiotic drivers and microbial community structure.Conclusions and perspectivesThere is increasing evidence that drought stress can result in the decoupling of the above- and belowground processes, which are associated with soil respiration. However, studies on the variation in rates of soil respiration and its components under different intensities and frequencies of drought stress over the ecosystems should be reinforced. Meanwhile, molecular phylogenetics and functional genomics should be applied to link microbial ecology to the process of Rs. In addition, we should quantify the relationship between soil respiration and global change parameters (such as warming and elevated [CO2]) under drought stress. Models simulating the rates of soil respiration and its components under global climate change and drought stress should also be developed.

Effects of biochar application on soil greenhouse gas fluxes: a meta-analysis

Biochar application to soils may increase carbon (C) sequestration due to the inputs of recalcitrant organic C. However, the effects of biochar application on the soil greenhouse gas (GHG) fluxes appear variable among many case studies; therefore, the efficacy of biochar as a carbon sequestration agent for climate change mitigation remains uncertain. We performed a meta‐analysis of 91 published papers with 552 paired comparisons to obtain a central tendency of three main GHG fluxes (i.e., CO2, CH4, and N2O) in response to biochar application. Our results showed that biochar application significantly increased soil CO2 fluxes by 22.14%, but decreased N2O fluxes by 30.92% and did not affect CH4 fluxes. As a consequence, biochar application may significantly contribute to an increased global warming potential (GWP) of total soil GHG fluxes due to the large stimulation of CO2 fluxes. However, soil CO2 fluxes were suppressed when biochar was added to fertilized soils, indicating that biochar application is unlikely to stimulate CO2 fluxes in the agriculture sector, in which N fertilizer inputs are common. Responses of soil GHG fluxes mainly varied with biochar feedstock source and soil texture and the pyrolysis temperature of biochar. Soil and biochar pH, biochar applied rate, and latitude also influence soil GHG fluxes, but to a more limited extent. Our findings provide a scientific basis for developing more rational strategies toward widespread adoption of biochar as a soil amendment for climate change mitigation.

Leaf structural characteristics are less important than leaf chemical properties in determining the response of leaf mass per area and photosynthesis of Eucalyptus saligna to industrial-age changes in [CO2] and temperature

The rise in atmospheric [CO(2)] is associated with increasing air temperature. However, studies on plant responses to interactive effects of [CO(2)] and temperature are limited, particularly for leaf structural attributes. In this study, Eucalyptus saligna plants were grown in sun-lit glasshouses differing in [CO(2)] (290, 400, and 650 µmol mol(-1)) and temperature (26 °C and 30 °C). Leaf anatomy and chloroplast parameters were assessed with three-dimensional confocal microscopy, and the interactive effects of [CO(2)] and temperature were quantified. The relative influence of leaf structural attributes and chemical properties on the variation of leaf mass per area (LMA) and photosynthesis within these climate regimes was also determined. Leaf thickness and mesophyll size increased in higher [CO(2)] but decreased at the warmer temperature; no treatment interaction was observed. In pre-industrial [CO(2)], warming reduced chloroplast diameter without altering chloroplast number per cell, but the opposite pattern (reduced chloroplast number per cell and unchanged chloroplast diameter) was observed in both current and projected [CO(2)]. The variation of LMA was primarily explained by total non-structural carbohydrate (TNC) concentration rather than leaf thickness. Leaf photosynthetic capacity (light- and [CO(2)]-saturated rate at 28 °C) and light-saturated photosynthesis (under growth [CO(2)] and temperature) were primarily determined by leaf nitrogen contents, while secondarily affected by chloroplast gas exchange surface area and chloroplast number per cell, respectively. In conclusion, leaf structural attributes are less important than TNC and nitrogen in affecting LMA and photosynthesis responses to the studied climate regimes, indicating that leaf structural attributes have limited capacity to adjust these functional traits in a changing climate.

Differential influence of clonal integration on morphological and growth responses to light in two invasive herbs.

Background and aims In contrast to seeds, high sensitivity of vegetative fragments to unfavourable environments may limit the expansion of clonal invasive plants. However, clonal integration promotes the establishment of propagules in less suitable habitats and may facilitate the expansion of clonal invaders into intact native communities. Here, we examine the influence of clonal integration on the morphology and growth of ramets in two invasive plants, Alternanthera philoxeroides and Phyla canescens, under varying light conditions. Methods In a greenhouse experiment, branches, connected ramets and severed ramets of the same mother plant were exposed under full sun and 85% shade and their morphological and growth responses were assessed. Key results The influence of clonal integration on the light reaction norm (connection×light interaction) of daughter ramets was species-specific. For A. philoxeroides, clonal integration evened out the light response (total biomass, leaf mass per area, and stem number, diameter and length) displayed in severed ramets, but these connection×light interactions were largely absent for P. canescens. Nevertheless, for both species, clonal integration overwhelmed light effect in promoting the growth of juvenile ramets during early development. Also, vertical growth, as an apparent shade acclimation response, was more prevalent in severed ramets than in connected ramets. Finally, unrooted branches displayed smaller organ size and slower growth than connected ramets, but the pattern of light reaction was similar, suggesting mother plants invest in daughter ramets prior to their own branches. Conclusions Clonal integration modifies light reaction norms of morphological and growth traits in a species-specific manner for A. philoxeroides and P. canescens, but it improves the establishment of juvenile ramets of both species in light-limiting environments by promoting their growth during early development. This factor may be partially responsible for their ability to successfully colonize native plant communities.

Seasonal variation of temperature response of respiration in invasive Berberis thunbergii (Japanese barberry) and two co-occurring native understory shrubs in a northeastern US deciduous forest.

In the understory of a closed forest, plant growth is limited by light availability, and early leafing is proposed to be an important mechanism of plant invasion by providing a spring C “subsidy” when high light is available. However, studies on respiration, another important process determining plant net C gain, are rare in understory invasive plants. In this study, leaf properties and the temperature response of leaf respiration were compared between invasive Berberis thunbergii, an early leafing understory shrub, and two native shrubs, Kalmia latifolia, a broadleaf evergreen and Vaccinium corymbosum, a late-leafing deciduous species, in an oak-dominated deciduous forest. The seasonal trend of the basal respiration rates (R0) and the temperature response coefficient (E0), were different among the three shrubs and species-specific negative correlations were observed between R0 and E0. All three shrubs showed significant correlation between respiration rate on an area basis (20°C) and leaf N on an area basis. The relationship was attributed to the variation of both leaf N on a mass basis and leaf mass per area (LMA) in B. thunbergii, but to LMA only in K. latifolia and V. corymbosum. After modeling leaf respiration throughout 2004, B. thunbergii displayed much higher annual leaf respiration (mass based) than the two native shrubs, indicating a higher cost per unit of biomass investment. Thus, respiratory properties alone were not likely to lead to C balance advantage of B. thunbergii. Future studies on whole plant C budgets and leaf construction cost are needed to address the C balance advantage in early leafing understory shrubs like B. thunbergii.

Predicting ecosystem carbon balance in a warming Arctic: the importance of long-term thermal acclimation potential and inhibitory effects of light on respiration

The carbon balance of Arctic ecosystems is particularly sensitive to global environmental change. Leaf respiration (R), a temperature-dependent key process in determining the carbon balance, is not well-understood in Arctic plants. The potential for plants to acclimate to warmer conditions could strongly impact future global carbon balance. Two key unanswered questions are (1) whether short-term temperature responses can predict long-term respiratory responses to growth in elevated temperatures and (2) to what extent the constant daylight conditions of the Arctic growing season inhibit leaf respiration. In two dominant Arctic species Eriophorum vaginatum (tussock grass) and Betula nana (woody shrub), we assessed the extent of respiratory inhibition in the light (RL/RD), respiratory response to short-term temperature change, and respiratory acclimation to long-term warming treatments. We found that R of both species is strongly inhibited by light (averaging 35% across all measurement temperatures). In E. vaginatum both RL and RD acclimated to the long-term warming treatment, reducing the magnitude of respiratory response relative to the short-term response to temperature increase. In B. nana, both RL and RD responded to short-term temperature increase but showed no acclimation to the long-term warming. The ability to predict plant respiratory response to global warming with short-term temperature responses will depend on species-specific acclimation potential and the differential response of RL and RD to temperature. With projected woody shrub encroachment in Arctic tundra and continued warming, changing species dominance between these two functional groups, may impact ecosystem respiratory response and carbon balance.

Dendrochonological Potential of Japanese Barberry (Berberis thunbergii): A Case Study in the Black Rock Forest, New York

Abstract The deciduous forests of northeastern United States are currently experiencing an invasion of the exotic plant species Japanese barberry (Berberis thunbergii). This recent and rapid invasion leads to rising concern about its potential threats to native species as well as natural ecosystems, demanding a better understanding of its invasion mechanisms and potential responses to climate change. Unfortunately, few studies have been conducted to understand the influence of climate on the growth of B. thunbergii, largely because of the absence of long-term growth records. In this study we demonstrate growth rings of B. thunbergii are annually resolved and crossdatable. The first ring-width chronology of B. thunbergii was therefore developed using samples collected from the Black Rock Forest (BRF), New York. Climate-growth relationship analysis indicates the growth of B. thunbergii in the BRF is positively correlated with precipitation in prior October, current February and May–August, but is negatively correlated with current March precipitation. The growth of B. thunbergii is also negatively correlated with temperatures in prior winter (November–January) and current summer (June–July), but is positively correlated with current spring temperature (March–May). These dendrochronological results on B. thunbergii, together with further physiological studies, will improve our understanding on how the growth of this invasive species is affected by local climate dynamics, as well as the long-term invasion potential that is tied to its responses to climate change.

Soil Biochar Quantification via Hyperspectral Unmixing

Biochar has unique function to improve soil chemo-physical and biological properties for crop growth. Because changes of biochar in soil may affect its long-term effectiveness as an amendment, it is important to quantify and monitor biochar after application. In this paper, we propose a solution for this problem via hyperspectral image analysis. We treat the soil image as a mixture of soil and biochar signals, and then apply hyperspectral unmixing methods to predict the biochar abundance at each pixel. The final percentage of biochar can be calculated by taking the mean of the abundance of hyperspectral pixels. We have compared several hyperspectral unmixing methods based on least squares estimation and nonnegative matrix factorization with various sparsity constraints. Experimental results are evaluated by polynomial regression and root mean square errors against the ground truth data collected in the environmental labs. The results show that hyperspectral unmixing is a promising method to measure the percentage of biochar in the soil.