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Dive into the research topics where Chenyang Shen is active.

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Featured researches published by Chenyang Shen.


Physics in Medicine and Biology | 2017

Comprehensive analysis of proton range uncertainties related to stopping-power-ratio estimation using dual-energy CT imaging

Bin Li; H C Lee; Xinhui Duan; Chenyang Shen; Linghong Zhou; Xun Jia; Ming Yang

The dual-energy CT-based (DECT) approach holds promise in reducing the overall uncertainty in proton stopping-power-ratio (SPR) estimation as compared to the conventional stoichiometric calibration approach. The objective of this study was to analyze the factors contributing to uncertainty in SPR estimation using the DECT-based approach and to derive a comprehensive estimate of the range uncertainty associated with SPR estimation in treatment planning. Two state-of-the-art DECT-based methods were selected and implemented on a Siemens SOMATOM Force DECT scanner. The uncertainties were first divided into five independent categories. The uncertainty associated with each category was estimated for lung, soft and bone tissues separately. A single composite uncertainty estimate was eventually determined for three tumor sites (lung, prostate and head-and-neck) by weighting the relative proportion of each tissue group for that specific site. The uncertainties associated with the two selected DECT methods were found to be similar, therefore the following results applied to both methods. The overall uncertainty (1σ) in SPR estimation with the DECT-based approach was estimated to be 3.8%, 1.2% and 2.0% for lung, soft and bone tissues, respectively. The dominant factor contributing to uncertainty in the DECT approach was the imaging uncertainties, followed by the DECT modeling uncertainties. Our study showed that the DECT approach can reduce the overall range uncertainty to approximately 2.2% (2σ) in clinical scenarios, in contrast to the previously reported 1%.


Medical Physics | 2018

Material elemental decomposition in dual and multi-energy CT via a sparsity-dictionary approach for proton stopping power ratio calculation

Chenyang Shen; Bin Li; L Chen; Ming Yang; Yifei Lou; Xun Jia

PURPOSE Accurate calculation of proton stopping power ratio (SPR) relative to water is crucial to proton therapy treatment planning, since SPR affects prediction of beam range. Current standard practice derives SPR using a single CT scan. Recent studies showed that dual-energy CT (DECT) offers advantages to accurately determine SPR. One method to further improve accuracy is to incorporate prior knowledge on human tissue composition through a dictionary approach. In addition, it is also suggested that using CT images with multiple (more than two) energy channels, i.e., multi-energy CT (MECT), can further improve accuracy. In this paper, we proposed a sparse dictionary-based method to convert CT numbers of DECT or MECT to elemental composition (EC) and relative electron density (rED) for SPR computation. METHOD A dictionary was constructed to include materials generated based on human tissues of known compositions. For a voxel with CT numbers of different energy channels, its EC and rED are determined subject to a constraint that the resulting EC is a linear non-negative combination of only a few tissues in the dictionary. We formulated this as a non-convex optimization problem. A novel algorithm was designed to solve the problem. The proposed method has a unified structure to handle both DECT and MECT with different number of channels. We tested our method in both simulation and experimental studies. RESULTS Average errors of SPR in experimental studies were 0.70% in DECT, 0.53% in MECT with three energy channels, and 0.45% in MECT with four channels. We also studied the impact of parameter values and established appropriate parameter values for our method. CONCLUSION The proposed method can accurately calculate SPR using DECT and MECT. The results suggest that using more energy channels may improve the SPR estimation accuracy.


IEEE Transactions on Medical Imaging | 2018

Intelligent Parameter Tuning in Optimization-Based Iterative CT Reconstruction via Deep Reinforcement Learning

Chenyang Shen; Yesenia Gonzalez; L Chen; S Jiang; Xun Jia

A number of image-processing problems can be formulated as optimization problems. The objective function typically contains several terms specifically designed for different purposes. Parameters in front of these terms are used to control the relative importance among them. It is of critical importance to adjust these parameters, as quality of the solution depends on their values. Tuning parameters are a relatively straight forward task for a human, as one can intuitively determine the direction of parameter adjustment based on the solution quality. Yet manual parameter tuning is not only tedious in many cases, but also becomes impractical when a number of parameters exist in a problem. Aiming at solving this problem, this paper proposes an approach that employs deep reinforcement learning to train a system that can automatically adjust parameters in a human-like manner. We demonstrate our idea in an example problem of optimization-based iterative computed tomography (CT) reconstruction with a pixel-wise total-variation regularization term. We set up a parameter-tuning policy network (PTPN), which maps a CT image patch to an output that specifies the direction and amplitude by which the parameter at the patch center is adjusted. We train the PTPN via an end-to-end reinforcement learning procedure. We demonstrate that under the guidance of the trained PTPN, reconstructed CT images attain quality similar or better than those reconstructed with manually tuned parameters.


Siam Journal on Imaging Sciences | 2018

Multienergy Cone-Beam Computed Tomography Reconstruction with a Spatial Spectral Nonlocal Means Algorithm

Bin Li; Chenyang Shen; Y Chi; Ming Yang; Yifei Lou; Linghong Zhou; Xun Jia

Multi-energy computed tomography (CT) is an emerging medical image modality with a number of potential applications in diagnosis and therapy. However, high system cost and technical barriers obstruct its step into routine clinical practice. In this study, we propose a framework to realize multi-energy cone beam CT (ME-CBCT) on the CBCT system that is widely available and has been routinely used for radiotherapy image guidance. In our method, a kVp switching technique is realized, which acquires x-ray projections with kVp levels cycling through a number of values. For this kVp-switching based ME-CBCT acquisition, x-ray projections of each energy channel are only a subset of all the acquired projections. This leads to an undersampling issue, posing challenges to the reconstruction problem. We propose a spatial spectral non-local means (ssNLM) method to reconstruct ME-CBCT, which employs image correlations along both spatial and spectral directions to suppress noisy and streak artifacts. To address the intensity scale difference at different energy channels, a histogram matching method is incorporated. Our method is different from conventionally used NLM methods in that spectral dimension is included, which helps to effectively remove streak artifacts appearing at different directions in images with different energy channels. Convergence analysis of our algorithm is provided. A comprehensive set of simulation and real experimental studies demonstrate feasibility of our ME-CBCT scheme and the capability of achieving superior image quality compared to conventional filtered backprojection-type (FBP) and NLM reconstruction methods.


Physics in Medicine and Biology | 2017

A new method to reconstruct intra-fractional prostate motion in volumetric modulated arc therapy

Y Chi; N H Rezaeian; Chenyang Shen; Y Zhou; Weiguo Lu; Ming Yang; Raquibul Hannan; Xun Jia

Intra-fractional motion is a concern during prostate radiation therapy, as it may cause deviations between planned and delivered radiation doses. Because accurate motion information during treatment delivery is critical to address dose deviation, we developed the projection marker matching method (PM3), a novel method for prostate motion reconstruction in volumetric modulated arc therapy. The purpose of this method is to reconstruct in-treatment prostate motion trajectory using projected positions of implanted fiducial markers measured in kV x-ray projection images acquired during treatment delivery. We formulated this task as a quadratic optimization problem. The objective function penalized the distance from the reconstructed 3D position of each fiducial marker to the corresponding straight line, defined by the x-ray projection of the marker. Rigid translational motion of the prostate and motion smoothness along the temporal dimension were assumed and incorporated into the optimization model. We tested the motion reconstruction method in both simulation and phantom experimental studies. We quantified the accuracy using 3D normalized root-mean-square (RMS) error defined as the norm of a vector containing ratios between the absolute RMS errors and corresponding motion ranges in three dimensions. In the simulation study with realistic prostate motion trajectories, the 3D normalized RMS error was on average [Formula: see text] (range from [Formula: see text] to [Formula: see text]). In an experimental study, a prostate phantom was driven to move along a realistic prostate motion trajectory. The 3D normalized RMS error was [Formula: see text]. We also examined the impact of the model parameters on reconstruction accuracy, and found that a single set of parameters can be used for all the tested cases to accurately reconstruct the motion trajectories. The motion trajectory derived by PM3 may be incorporated into novel strategies, including 4D dose reconstruction and adaptive treatment replanning to address motion-induced dose deviation.


Medical Physics | 2016

WE-AB-207A-04: Random Undersampled Cone Beam CT: Theoretical Analysis and a Novel Reconstruction Method

Chenyang Shen; Yifei Lou; L Chen; X Jia

PURPOSE Reducing x-ray exposure and speeding up data acquisition motived studies on projection data undersampling. It is an important question that for a given undersampling ratio, what the optimal undersampling approach is. In this study, we propose a new undersampling scheme: random-ray undersampling. We will mathematically analyze its projection matrix properties and demonstrate its advantages. We will also propose a new reconstruction method that simultaneously performs CT image reconstruction and projection domain data restoration. METHODS By representing projection operator under the basis of singular vectors of full projection operator, matrix representations for an undersampling case can be generated and numerical singular value decomposition can be performed. We compared properties of matrices among three undersampling approaches: regular-view undersampling, regular-ray undersampling, and the proposed random-ray undersampling. To accomplish CT reconstruction for random undersampling, we developed a novel method that iteratively performs CT reconstruction and missing projection data restoration via regularization approaches. RESULTS For a given undersampling ratio, random-ray undersampling preserved mathematical properties of full projection operator better than the other two approaches. This translates to advantages of reconstructing CT images at lower errors. Different types of image artifacts were observed depending on undersampling strategies, which were ascribed to the unique singular vectors of the sampling operators in the image domain. We tested the proposed reconstruction algorithm on a Forbid phantom with only 30% of the projection data randomly acquired. Reconstructed image error was reduced from 9.4% in a TV method to 7.6% in the proposed method. CONCLUSION The proposed random-ray undersampling is mathematically advantageous over other typical undersampling approaches. It may permit better image reconstruction at the same undersampling ratio. The novel algorithm suitable for this random-ray undersampling was able to reconstruct high-quality images.


Medical Physics | 2015

WE‐G‐207‐08: Imaging Dose Reduction and Scatter Removal in Cone Beam CT Via Random Undersampling: A Simulation Study

Chenyang Shen; L. Chen; Y Xu; Z Tian; M. Ng; T Zeng; Yifei Lou; L Zhu; X Jia

Purpose: Cone-beam CT (CBCT) is widely used in image-guided radiation therapy. The high imaging dose from repeated uses is a clinical concern and its image quality is impeded by a large amount of scattered photons. We propose to solve these two problems via a random undersampling method. We have performed Monte Carlo (MC) simulation studies for an initial test of the method. Methods: We propose to place a moving beam blocker with a random blocking pattern in front of the x-ray source. It blocks a projection with a random pattern, which varies among projections. Scatter signal is measured in the deliberately created shadows, which is further interpolated to the entire projection. After removing the interpolated scatter from the total signal in the un-blocked area, the cleaned data were used for CBCT reconstruction under a Tight Frame (TF) based iterative method. The random sampling yields a projection matrix that has a better numerical property compared to regular undersampling, permitting better image reconstruction. Results: 360 CBCT projections of a head-and-neck cancer patient were generated via MC simulations. We first reconstructed CBCTs using 90 full projections with only primary data. The RMS error was 16%. When scattered photons were included in the projection, reduced contrast was observed and the RMS error was 22%. In our proposed method, 360 projections were used, but each of them was randomly blocked by 75% of pixels. Scatter estimation and was performed and the corrected data were used in reconstruction, yielding a reconstruction error of 15%. In these two approaches, the imaging doses were both reduced by ∼75% compared to a full scan with 360 unblocked projections. Conclusion: we proposed a method to solve the imaging dose and scatter problem in CBCT in a unified manner. Preliminary simulation studies demonstrated its efficacy.


International Journal of Radiation Oncology Biology Physics | 2017

Element-Resolved Multi-energy Cone Beam CT Realized on a Conventional Cone Beam CT Platform

Chenyang Shen; B. Li; Y. Lou; Xun Jia


Medical Physics | 2018

Multienergy element‐resolved cone beam CT (MEER‐CBCT) realized on a conventional CBCT platform

Chenyang Shen; Bin Li; Yifei Lou; Ming Yang; Linghong Zhou; Xun Jia


International Journal of Radiation Oncology Biology Physics | 2018

Automatic Inverse Treatment Planning for Cervical Cancer High Dose-Rate Brachytherapy via Deep Reinforcement Learning

Chenyang Shen; Y. Gonzalez; H. Jung; L. Chen; N. Qin; Xun Jia

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Xun Jia

University of Texas Southwestern Medical Center

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Ming Yang

University of Texas Southwestern Medical Center

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Yifei Lou

University of Texas at Dallas

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Bin Li

University of Texas Southwestern Medical Center

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L Chen

University of Texas Southwestern Medical Center

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S Jiang

University of Texas Southwestern Medical Center

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X Jia

University of Texas Southwestern Medical Center

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Linghong Zhou

Southern Medical University

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Y Chi

University of Texas Southwestern Medical Center

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Z Tian

University of Texas Southwestern Medical Center

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