Chih-Yu Chiu

Bacterial Community Diversity in Undisturbed Perhumid Montane Forest Soils in Taiwan

The diversity and composition of soil bacterial communities in three topographic sites (summit, foot slope, and lakeshore) from subtropical montane forest ecosystem in Taiwan were examined by using 16S rRNA gene clone library analysis. This locality is temperate, perhumid, and has low soil acidity (pH < 4), which is an uncommon ecosystem in a monsoonal part of Southeast Asia. A total of 481 clones were sequenced and placed into ten phylogenetic groups according to their similarities to type strains of described organisms. Toposequence of the transect was investigated from summit to foot slope and at the lakeshore. More than 86% of the clones were affiliated with members of the Proteobacteria, Acidobacteria, and Actinobacteria. Within the Proteobacteria, the β-Proteobacteria was the most abundant, then α-Proteobacteria and γ-Proteobacteria. Based on the Shannon diversity index (H) analysis, the bacterial community in the foot slope was the most diverse (H = 0.86) and that in summit was the least diverse (H = 0.68). The composition and diversity of soil bacterial communities in the three sites suggested no trend with topographic change. Less than 20% of the sequences were Acidobacteria-affiliated clones. The low proportion of Acidobacteria observed may be related to the high soil moisture and anaerobic microhabitats. Moreover, Shannon diversity indices revealed these bacterial communities to have lower diversity than that of other temperate (H = 0.90) and tropical forest (H = 0.82) ecosystems. The extreme acidity of soil pH and high soil moisture of this forest may explain composition and reduced the diversity of these soil bacterial communities.

Denitrification associated N loss in mangrove soil

Despite the well-known mechanism of N loss through denitrification in wetland, little information is available for mangrove soil. The aim of this study is to quantify N loss via denitrification in mangrove soil, to clarify factors affecting denitrification and to evaluate the role of plants in the mechanism of nitrification–denitrification in mangrove soil. The N loss from mangrove soil was 76%, possibly 55% through denitrification, measured using a 15N tracer technique. The N loss was reduced to 45% when a nitrification inhibitor, N-serve, was added. Planting reduced the N loss from mangrove soil more than the nitrification inhibitor. The combination of planting and applicasion of nitrification inhibitor completely prevented N loss from mangrove soil. Denitrification in fresh soil samples from a mangrove forest declined markedly from the surface to the sub-surface soil. Available C limited denitrification. The ability of glucose to induce denitrification declined with soil depth, suggesting a decline in the denitrifier population with depth. Significant reduction in N loss from mangrove soil after adding nitrification inhibitor indicates that nitrification is the key factor in N loss of mangrove soil. As there was no significant difference in denitrification between rhizosphere and non-rhizosphere soil, the cause of N loss in the mangrove soil may occur primarily in the surface soil rather than in the rhizosphere soil.

Seasonal and Episodic Lake Mixing Stimulate Differential Planktonic Bacterial Dynamics

Yuan Yang Lake (YYL), Taiwan, experiences both winter and typhoon-initiated mixing, and each type of mixing event is characterized by contrasting environmental conditions. Previous work suggested that after typhoon mixing, bacterial communities in YYL reset to a pioneer composition and then follow a predictable trajectory of change until the next typhoon. Our goal was to continue this investigation by observing bacterial community change after a range of mixing intensities, including seasonal winter mixing. We fingerprinted aquatic bacterial communities in the epilimnion and hypolimnion using automated ribosomal intergenic spacer analysis and then assessed community response using multivariate statistics. We found a significant linear relationship between water column stability and the epilimnion to hypolimnion divergences. In comparison to the summer, we found the winter community had a distinct composition and less variation. We divided the bacterial community into population subsets according to abundance (rare, common, or dominant) and occurrence (transient or persistent) and further explored the contribution of these subsets to the overall community patterns. We found that transient taxa did not drive bacterial community patterns following weak typhoon mixing events, but contributed substantially to patterns observed following strong events. Common taxa generally did not follow the community trajectory after weak or strong events. Our results suggest intensity, frequency, and seasonality jointly contribute to aquatic bacterial response to mixing disturbance.

Cesium and strontium sorption by selected tropical and subtropical soils around nuclear facilities.

The dynamics of Cs and Sr sorption by soils, especially in the subtropics and tropics, as influenced by soil components are not fully understood. The rates and capacities of Cs and Sr sorption by selected subtropical and tropical soils in Taiwan were investigated to facilitate our understanding of the transformation and dynamics of Cs and Sr in soils developed under highly weathering intensity. The Langmuir isotherms and kinetic rates of Cs and Sr sorption on the Ap1 and Bt1 horizons of the Long-Tan (Lt) and the A and Bt1 horizons of the Kuan-Shan (Kt), Mao-Lin (Tml) and Chi-Lo (Cl) soils were selected for this study. Air-dried soil (<2mm) samples were reacted with of 7.5 x 10(-5) to 1.88 x 10(-3)M of CsCl (pH 4.0) or 1.14 x 10(-4) to 2.85 x 10(-3)M of SrCl(2) (pH 4.0) solutions at 25 degrees C. The sorption maximum capacity (q(m)) of Cs by the Ap1 and Bt1 horizons of the Lt soil (62.24 and 70.70 mmol Cs kg(-1) soil) were significantly (p<0.05) higher than those by the A and Bt1 horizons of the Kt and Cl soils (26.46 and 27.49 mmol Cs kg(-1) soil in Kt soil and 34.83 and 29.96 mmol Cs kg(-1) soil in Cl soil, respectively), however, the sorption maximum capacity values of the Lt and Tml soils did not show significant differences. The amounts of pyrophosphate extractable Fe (Fe(p)) were correlated significantly with the Cs and Sr sorption capacities (for Cs sorption, r(2)=0.97, p<1.0 x 10(-4); for Sr sorption, r(2)=0.82, p<2.0 x 10(-3)). The partition coefficient of radiocesium sorbed on soil showed the following order: Cl soil>>Kt soil>Tml soil>Lt soil. It was due to clay minerals. The second-order kinetic model was applied to the Cs and Sr sorption data. The rate constant of Cs or Sr sorption on the four soils was substantiality increased with increasing temperature. This is attributable to the availability of more energy for bond breaking and bond formation brought about by the higher temperatures. The rate constant of Cs sorption at 308 K was 1.39-2.09 times higher than that at 278K in the four soils. The activation energy of Cs and Sr sorbed by the four soils ranged from 7.2 to 16.7 kJ mol(-1) and from 15.2 to 22.4 kJ mol(-1), respectively. Therefore, the limiting step of the Cs(+) or Sr(2+) sorption on the soils was diffusion-controlled processes. The reactive components, which are significantly correlated with the Langmuir sorption maxima of Cs and Sr by these soils, substantially influenced their kinetic rates of Cs and Sr sorption. The data indicate that among components of the subtropical and tropical soils studied, short-range ordered sesquioxides especially Al- and Fe-oxides complexed with organics play important roles in influencing their capacity and dynamics of Cs and Sr sorption.

Low-molecular-weight Organic Acids Exuded by Millet ( setaria italica (l.) Beauv.) Roots and Their Effect on the Remediation of Cadmium-contaminated Soil

Cadmium (Cd)-contaminated soils are of concern because of their possible effects on ecosystems and human health. Millet (Setaria italica (L.) Beauv.) is moderately tolerant to salinity and poor soil fertility as well as pristine soils contaminated with trace elements. It has been hypothesized that low-molecular-weight organic acids (LMWOA) exuded into the rhizosphere may play important roles in Cd uptake by millet. Thus the objectives of this study were to assess the LMWOA exudations of millet in Cd-contaminated soils and to evaluate the capacity of millet to remove Cd for phytoremediation. Millet was grown for 3 weeks in soils containing between 0 and 1,000 mg Cd kg−1. These soils and plant tissues were analyzed for Cd content after harvest. The Cd accumulated in millet tissues was significantly increased with increasing Cd-amended rate. The total LMWOA concentrations in root exudates were significantly correlated with the amount of Cd accumulated in millet shoots and roots. High levels of Cd amendment stimulated secretion of LMWOA, a process capable of reducing Cd toxicity via the formation of Cd-organic complexes (Cd-LMWOA), thereby detoxifying the contaminated soil.

LOW-MOLECULAR-WEIGHT ORGANIC ACID EXUDATION OF RAPE (BRASSICA CAMPESTRIS) ROOTS IN CESIUM-CONTAMINATED SOILS

Cesium is an emission element from nuclear energy generation easily transferred to food chain. More evidence has been found that Brassica crops take up pollutants from soils. The objective of this study was to investigate the correlation between soil bioavailability of cesium and low-molecular-weight organic acids (LMWOAs) in rape (Brassica campestris) root exudates. Longtan (LT) red (Typic Hapladox) and Kuanshan (KS) iron-rich calcareous soils (Typic Paleudalf) were collected for this study. The pot experiments of rape were conducted with cesium-amended soils and plants grown in the soils (4 weeks). Cesium concentration in shoots and roots correlated well with Cs concentration in the amended soils. Within the amended range of 50 to 300 mg Cs kg−1 soil, Cs did not inhibit rape growth. The bioaccumulation ratio ([Cs]root/[Cs]soil] or [Cs]shoot/[Cs]soil) for Cs in shoots of pot grown plants ranged between 9 and 31 and showed significant differences (P < 0.05). Plant roots can exude LMWOAs, which are important components in root exudation. The total amounts of volatile and nonvolatile LMWOAs in all Cs-amended soils were higher than those in nonamended soils. Meanwhile, the LMWOA concentrations of the rape root exudates showed good correlation with Cs concentrations in the applied range of 50 to 300 mg Cs kg−1 soil.

13C-NMR spectroscopy studies of humic substances in subtropical perhumid montane forest soil

We investigated soil organic matter in a forest of natural Hinoki cypress (Chamaecyparis obtusa) under perhumid weather conditions in north central Taiwan. Humic substances along the transect from the summit and footslope to lakeshore were characterized by use of solid-state cross-polarization, magic-angle-spinning 13C nuclear magnetic resonance spectroscopy (CP/MAS 13C-NMR). The major components of soil organic carbon in whole soil and humic substances were alkyl-C, O-alkyl-C, and di-O-alkyl-C, ranging from 60.6% to 80.7%, then aromatic-C, 7.5% to 9.8%. The degree of humification of soil organic matter, both O-alkyl-C/alkyl-C ratio and aromaticity, decreased slightly from the summit to lakeshore. The content of functional groups of polar and acidic groups, including O-alkyl-C, di-O-alkyl-C, and carboxyl-C, corresponded with the topographical effect, increasing slightly from the summit to lakeshore. However, the relatively low degree of humification in soils of this perhumid forest and low aromaticity were due to high precipitation and acidity, which appeared to hinder organic matter decomposition with topography change.

Changes of soil bacterial communities in bamboo plantations at different elevations

The effect of altitude on the distribution of plants and animals has been well studied. In contrast, the response of microbes to elevation is poorly understood. To determine whether soil bacterial communities respond to altitudinal gradients, moso bamboo forest soils along a gradient of six elevations from 600 to 1800 m were investigated using the barcoded pyrosequencing method. The results revealed that Acidobacteria and Proteobacteria predominated in the six communities, although the relative abundances were different. Non-metric multidimensional scaling analysis with the abundant OTUs showed that the community composition possessed a complex relationship with elevation. The communities at 1000 and 1200 m were similar and possessed higher levels of diversity than the communities at both lower and higher elevations, giving the diversity a hump-backed trend with elevation. By contrast, the soil C and N and microbial biomass properties increased linearly with elevation. Thus, the complex response of the bacterial community composition and diversity across elevation could not be explained as a simple response to elevation and presumably results from interactions between multiple factors such as soil organic matter content and temperature.

Comparison of soil bacterial communities in a natural hardwood forest and coniferous plantations in perhumid subtropical low mountains

BackgroundThe bacterial community of forest soils is influenced by environmental disturbance and/or meteorological temperature and precipitation. In this study, we investigated three bacterial communities in soils of a natural hardwood forest and two plantations of conifer, Calocedrus formosana and Cryptomeria japonica, in a perhumid, low mountain area. By comparison with our previous studies with similar temperature and/or precipitation, we aimed to elucidate how disturbance influences the bacterial community in forest soils and whether bacterial communities in similar forest types differ under different climate conditions.ResultsAnalysis of 16S ribosomal RNA gene clone libraries revealed that Acidobacteria and Proteobacteria were the most abundant phyla in the three forest soil communities, with similar relative abundance of various bacterial groups. However, UniFrac analysis based on phylogenetic information revealed differences of bacterial communities between natural hardwood forest and coniferous plantation soils. The diversities of bacterial communities of the replanted Calocedrus and Cryptomeria forests were higher than that in natural hardwood forest. The bacterial diversity of these three forest soil were all higher than those in the same forest types at other locations with less precipitation or with lower temperature. In addition, the distribution of some of the most abundant operational taxonomic units in the three communities differed from other forest soils, including those related to Acidobacteria, α-, β- and γ-Proteobacteria.ConclusionsReforestation could increase the bacterial diversity. Therefore, soil bacterial communities could be shaped by the forestry management practices and climate differences in warm and humid conditions.

Humic Acid Composition and Characteristics of Soil Organic Matter in Relation to the Elevation Gradient of Moso Bamboo Plantations.

Studying the influence of climatic and/or site-specific factors on soil organic matter (SOM) along an elevation gradient is important for understanding the response of SOM to global warming. We evaluated the composition of SOM and structure of humic acids along an altitudinal gradient from 600 to 1400 m in moso bamboo (Phyllostachys edulis) plantations in central Taiwan using NMR spectroscopy and photometric analysis. Total organic C and total nitrogen (N) content increased with increasing elevation. Aromaticity decreased and ΔlogK (the logarithm of the absorbance ratio of humic acids at 400 and 600 nm) increased with increasing elevation, which suggests that SOM humification decreased with increasing elevation. High temperature at low elevations seemed to enhance the decomposition (less accumulation of total organic C and N) and humification (high aromaticity and low ΔlogK). The alkyl-C/O-alkyl-C (A/O-A) ratio of humic acids increased with increasing elevation, which suggests that SOM humification increased with increasing elevation; this finding was contrary to the trend observed for ΔlogK and aromaticity. Such a discrepancy might be due to the relatively greater remaining of SOM derived from high alkyl-C broadleaf litter of previous forest at high elevations. The ratio of recalcitrant C to total organic C was low at low elevations, possibly because of enhanced decomposition of recalcitrant SOM from the previous broadleaf forest during long-term intensive cultivation and high temperature. Overall, the change in SOM pools and in the rate of humification with elevation was primarily affected by changes in climatic conditions along the elevation gradient in these bamboo plantations. However, when the composition of SOM, as assessed by NMR spectroscopy and photometric analysis was considered, site-specific factors such as residual SOM from previous forest and intensive cultivation history could also have an important effect on the humic acid composition and humification of SOM.