Christina Hamlet

A numerical study of the effects of bell pulsation dynamics and oral arms on the exchange currents generated by the upside-down jellyfish Cassiopea xamachana

SUMMARY Mathematical and experimental studies of the flows generated by jellyfish have focused primarily on mechanisms of swimming. More recent work has also considered the fluid dynamics of feeding from currents generated during swimming. Here we capitalize on the benthic lifestyle of the upside-down jellyfish (Cassiopea xamachana) to explore the fluid dynamics of feeding uncoupled from swimming. A two-dimensional mathematical model is developed to capture the fundamental characteristics of the motion of the unique concave bell shape. Given the prominence of the oral arms, this structure is included and modeled as a porous layer that perturbs the flow generated by bell contractions. The immersed boundary method is used to solve the fluid–structure interaction problem. Velocity fields obtained from live organisms using digital particle image velocimetry were used to validate the numerical simulations. Parameter sweeps were used to numerically explore the effects of changes in pulse dynamics and the properties of the oral arms independently. Numerical experiments allow the opportunity to examine physical effects and limits within and beyond the biologically relevant range to develop a better understanding of the system. The presence of the prominent oral arm structures in the field of flow increased the flux of new fluid from along the substrate to the bell. The numerical simulations also showed that the presence of pauses between bell expansion and the next contraction alters the flow of the fluid over the bell and through the oral arms.

Reconfiguration and the reduction of vortex-induced vibrations in broad leaves.

SUMMARY Flexible plants, fungi and sessile animals reconfigure in wind and water to reduce the drag acting upon them. In strong winds and flood waters, for example, leaves roll up into cone shapes that reduce drag compared with rigid objects of similar surface area. Less understood is how a leaf attached to a flexible leaf stalk will roll up stably in an unsteady flow. Previous mathematical and physical models have only considered the case of a flexible sheet attached to a rigid tether in steady flow. In this paper, the dynamics of the flow around the leaf of the wild ginger Hexastylis arifolia and the wild violet Viola papilionacea are described using particle image velocimetry. The flows around the leaves are compared with those of simplified physical and numerical models of flexible sheets attached to both rigid and flexible beams. In the actual leaf, a stable recirculation zone is formed within the wake of the reconfigured cone. In the physical model, a similar recirculation zone is observed within sheets constructed to roll up into cones with both rigid and flexible tethers. Numerical simulations and experiments show that flexible rectangular sheets that reconfigure into U-shapes, however, are less stable when attached to flexible tethers. In these cases, larger forces and oscillations due to strong vortex shedding are measured. These results suggest that the three-dimensional cone structure in addition to flexibility is significant to both the reduction of vortex-induced vibrations and the forces experienced by the leaf.

Flow structure and transport characteristics of feeding and exchange currents generated by upside-down Cassiopea jellyfish

SUMMARY Quantifying the flows generated by the pulsations of jellyfish bells is crucial for understanding the mechanics and efficiency of their swimming and feeding. Recent experimental and theoretical work has focused on the dynamics of vortices in the wakes of swimming jellyfish with relatively simple oral arms and tentacles. The significance of bell pulsations for generating feeding currents through elaborate oral arms and the consequences for particle capture are not as well understood. To isolate the generation of feeding currents from swimming, the pulsing kinematics and fluid flow around the benthic jellyfish Cassiopea spp. were investigated using a combination of videography, digital particle image velocimetry and direct numerical simulation. During the rapid contraction phase of the bell, fluid is pulled into a starting vortex ring that translates through the oral arms with peak velocities that can be of the order of 10 cm s–1. Strong shear flows are also generated across the top of the oral arms throughout the entire pulse cycle. A coherent train of vortex rings is not observed, unlike in the case of swimming oblate medusae such as Aurelia aurita. The phase-averaged flow generated by bell pulsations is similar to a vertical jet, with induced flow velocities averaged over the cycle of the order of 1–10 mm s–1. This introduces a strong near-horizontal entrainment of the fluid along the substrate and towards the oral arms. Continual flow along the substrate towards the jellyfish is reproduced by numerical simulations that model the oral arms as a porous Brinkman layer of finite thickness. This two-dimensional numerical model does not, however, capture the far-field flow above the medusa, suggesting that either the three-dimensionality or the complex structure of the oral arms helps to direct flow towards the central axis and up and away from the animal.

The Fluid Dynamics of Feeding In the Upside-Down Jellyfish

The jellyfish has been the subject of numerous mathematical and physical studies ranging from the discovery of reentry phenomenon in electrophysiology to the development of axisymmetric methods for solving fluid-structure interaction problems. In the area of biologically inspired design, the jellyfish serves as a simple case study for understanding the fluid dynamics of unsteady propulsion with the goal of improving the design of underwater vehicles. In addition to locomotion, the study of jellyfish fluid dynamics could also lead to innovations in the design of filtration and sensing systems since an additional purpose of bell pulsations is to bring fluid to the organism for the purposes of feeding and nutrient exchange. The upside-down jellyfish, Cassiopea spp., is particularly well suited for feeding studies since it spends most of its time resting on the seafloor with its oral arms extended upward, pulsing to generate currents used for feeding and waste removal. In this paper, experimental measurements of the bulk flow fields generated by these organisms as well as the results from supporting numerical simulations are reviewed. Contraction, expansion, and pause times over the course of many contraction cycles are reported, and the effects of these parameters on the resulting fluid dynamics are explored. Of particular interest is the length of the rest period between the completion of bell expansion and the contraction of the next cycle. This component of the pulse cycle can be modeled as a Markov process. The discrete time Markov chain model can then be used to simulate cycle times using the distributions found empirically. Numerical simulations are used to explore the effects of the pulse characteristics on the fluid flow generated by the jellyfish. Preliminary results suggest that pause times have significant implications for the efficiency of particle capture and exchange.

Feeding Currents of the Upside Down Jellyfish in the Presence of Background Flow

The upside-down jellyfish (Cassiopea spp.) is an ideal organism for examining feeding and exchange currents generated by bell pulsations due to its relatively sessile nature. Previous experiments and numerical simulations have shown that the oral arms play an important role in directing new fluid into the bell from along the substrate. All of this work, however, has considered the jellyfish in the absence of background flow, but the natural environments of Cassiopea and other cnidarians are dynamic. Flow velocities and directions fluctuate on multiple time scales, and mechanisms of particle capture may be fundamentally different in moving fluids. In this paper, the immersed boundary method is used to simulate a simplified jellyfish in flow. The elaborate oral arm structure is modeled as a homogenous porous layer. The results show that the oral arms trap vortices as they form during contraction and expansion of the bell. For constant flow conditions, the vortices are directed gently across the oral arms where particle capture occurs. For variable direction flows, the secondary structures change the overall pattern of the flow around the bell and appear to stabilize regions of mixing around the secondary mouths.

Three-Dimensional Low Reynolds Number Flows near Biological Filtering and Protective Layers

Mesoscale filtering and protective layers are replete throughout the natural world. Within the body, arrays of extracellular proteins, microvilli, and cilia can act as both protective layers and mechanosensors. For example, blood flow profiles through the endothelial surface layer determine the amount of shear stress felt by the endothelial cells and may alter the rates at which molecules enter and exit the cells. Characterizing the flow profiles through such layers is therefore critical towards understanding the function of such arrays in cell signaling and molecular filtering. External filtering layers are also important to many animals and plants. Trichomes (the hairs or fine outgrowths on plants) can drastically alter both the average wind speed and profile near the leaf’s surface, affecting the rates of nutrient and heat exchange. In this paper, dynamically scaled physical models are used to study the flow profiles outside of arrays of cylinders that represent such filtering and protective layers. In addition, numerical simulations using the Immersed Boundary Method are used to resolve the three-dimensional flows within the layers. The experimental and computational results are compared to analytical results obtained by modeling the layer as a homogeneous porous medium with free flow above the layer. The experimental results show that the bulk flow is well described by simple analytical models. The numerical results show that the spatially averaged flow within the layer is well described by the Brinkman model. The numerical results also demonstrate, however, that the flow can be highly three-dimensional with fluid moving into and out of the layer. These effects are not described by the Brinkman model and may be significant for biologically relevant volume fractions. The results of this paper can be used to understand how variations in density and height of such structures can alter shear stresses and bulk flows.