Christof Walter

A clear correlation between the diradical character of 1,3-dipoles and their reactivity toward ethylene or acetylene.

A series of nine 1,3-dipoles, belonging to the families of diazonium betaines, nitrilium betaines, and azomethine betaines, has been studied by means of the breathing-orbital valence bond ab initio method. Each 1,3-dipole is described as a linear combination of three valence bond structures, two zwitterions and one diradical, for which the weights in the total wave function can be quantitatively estimated. In agreement with an early proposition of Harcourt, the diradical character of 1,3-dipoles is shown to be a critical feature to favor 1,3-dipolar cycloaddition. Within each family, a linear relationship is evidenced between the weight of the diradical structure in the 1,3-dipole and the barrier to cycloaddition to ethylene or acetylene, with correlation coefficients of 0.98-1.00. The barrier heights also correlate very well with the transition energies from ground state to pure diradical states of the 1,3-dipoles at equilibrium geometry. Moreover, the weight of the diradical structure is shown to increase significantly in all 1,3-dipoles from their equilibrium geometries to their distorted geometries in the transition states. A mechanism for 1,3-dipolar cycloaddition is proposed, in which the 1,3-dipole first distorts so as to reach a reactive state that possesses some critical diradical character and then adds to the dipolarophile with little or no barrier. This mechanism is in line with the recently proposed distortion/interaction energy model of Ess and Houk and their finding that the barrier heights for the cycloaddition of a given 1,3-dipole to ethylene and acetylene are nearly the same, despite the exothermicity difference (Ess, D. H. and Houk, K. N. J. Am. Chem. Soc. 2008, 130, 10187).

Multiple Reduction of 2,5-Bis(borolyl)thiophene: Isolation of a Negative Bipolaron by Comproportionation†

The 2,5-bis(borolyl)thiophene 2, a conjugated acceptor-π-acceptor system, can be reduced to the monoradical anion [2](.-) , the dianion [2](2-) , and the tetraanion [2](4-) . The dianion [2](2-) was also prepared by a comproportionation reaction and features an absorption maximum in the near-IR region (λmax =800 nm), which is characteristic of a bipolaron with a quinoidal structure.

Multidimensional spectroscopy of photoreactivity

Significance Many chemical reactions typically involve ultrafast reaction steps and are highly complex. Thus, one requires special methods to observe the associated atomic movements in real time. Though conventional femtosecond spectroscopy techniques are in principle capable of providing the necessary temporal resolution, they often suffer from the fact that they cannot isolate the overlapping spectral signatures of reactants, intermediates, and products. Here we demonstrate that this issue is unraveled using 2D and 3D electronic spectroscopy that directly visualizes the photochemical connectivity between photoreactive molecular species. Hence, this approach not only provides an intuitive and direct picture for which reactants can be turned into which products, but also exposes the reactive molecular modes connecting them with unprecedented perspicuity. Coherent multidimensional electronic spectroscopy is commonly used to investigate photophysical phenomena such as light harvesting in photosynthesis in which the system returns back to its ground state after energy transfer. By contrast, we introduce multidimensional spectroscopy to study ultrafast photochemical processes in which the investigated molecule changes permanently. Exemplarily, the emergence in 2D and 3D spectra of a cross-peak between reactant and product reveals the cis–trans photoisomerization of merocyanine isomers. These compounds have applications in organic photovoltaics and optical data storage. Cross-peak oscillations originate from a vibrational wave packet in the electronically excited state of the photoproduct. This concept isolates the isomerization dynamics along different vibrational coordinates assigned by quantum-chemical calculations, and is applicable to determine chemical dynamics in complex photoreactive networks.

Novel Dengue Virus NS2B/NS3 Protease Inhibitors

ABSTRACT Dengue fever is a severe, widespread, and neglected disease with more than 2 million diagnosed infections per year. The dengue virus NS2B/NS3 protease (PR) represents a prime target for rational drug design. At the moment, there are no clinical PR inhibitors (PIs) available. We have identified diaryl (thio)ethers as candidates for a novel class of PIs. Here, we report the selective and noncompetitive inhibition of the serotype 2 and 3 dengue virus PR in vitro and in cells by benzothiazole derivatives exhibiting 50% inhibitory concentrations (IC50s) in the low-micromolar range. Inhibition of replication of DENV serotypes 1 to 3 was specific, since all substances influenced neither hepatitis C virus (HCV) nor HIV-1 replication. Molecular docking suggests binding at a specific allosteric binding site. In addition to the in vitro assays, a cell-based PR assay was developed to test these substances in a replication-independent way. The new compounds inhibited the DENV PR with IC50s in the low-micromolar or submicromolar range in cells. Furthermore, these novel PIs inhibit viral replication at submicromolar concentrations.

Oligo(borolyl)benzenes--synthesis and properties.

Herein, we report the synthesis of boroles that are linked by a conjugated phenylene spacer. The characterization of these compounds was completed by NMR and UV/Vis spectroscopy, as well as X-ray crystal diffraction. Furthermore, the coordination behavior of these oligoboroles towards five electronically and sterically disparate pyridine derivatives was studied and revealed fundamental differences in the properties of the resulting adducts. The experimental results were supported by density functional theory (DFT) calculations that showed a charge-transfer effect upon formation of the pyridine-4-carbonitrile adduct. By chemical reduction of a tris(borolyl)-substituted benzene derivative, a hexaanion was isolated as a result of a two-electron reduction of each borolyl moiety. The interaction of the borolyl units through the aryl spacer, and the possible increase of the Lewis acidity due to the conjugation of the borolyl moieties, were investigated by base transfer reactions.

Photoisomerization among ring-open merocyanines. II. A computational study

The photochemical isomerization of the trans-trans-cis to the trans-trans-trans isomer of the merocyanine form of 6-nitro BIPS, which has been studied with femtosecond transient absorption spectroscopy [S. Ruetzel, M. Diekmann, P. Nuernberger, C. Walter, B. Engels, and T. Brixner, J. Chem. Phys. 140, 224310 (2014)], is investigated using time-dependent density functional theory in conjunction with polarizable continuum models. Benchmark calculations against SCS-ADC(2) evaluate the applicability of the CAM-B3LYP functional. Apart from a relaxed scan in the ground state with additional computation of the corresponding excitation energies, which produces the excited-state surface vertical to the ground-state isomerization coordinate, a relaxed scan in the S1 gives insight into the geometric changes orthogonal to the reaction coordinate and the fluorescence conditions. The shape of the potential energy surface (PES) along the reaction coordinate is found to be highly sensitive to solvation effects, with the method of solvation (linear response vs. state-specific) being critical. The shape of the PES as well as the computed harmonic frequencies in the S1 minima are in line with the experimental results and offer a straightforward interpretation.

The electronic structure of pyracene: a spectroscopic and computational study.

We report a synthetic, spectroscopic and computational study of the polycyclic aromatic molecule pyracene, which contains aliphatic five-membered rings annealed to a naphthalene chromophore. An improved route to synthesize the compound is described. Gas-phase IR and solid-state Raman spectra agree with a ground-state D2h structure. The electronically excited S1 A(1)B3u state has been studied by resonance-enhanced multiphoton ionisation. An adiabatic excitation energy T0 = 30,798 cm(-1) (3.818 eV) was determined. SCS-ADC(2) calculations found a D2h minimum energy structure of the S1 state and yielded an excitation energy of +3.98 eV, including correction for zero point vibrational energy. The spectrum shows a rich low-frequency vibrational structure that can be assigned to the overtones of out-of-plane deformation modes of the five-membered rings by comparison with computations. The appearance of these modes as well as the frequency reduction in the excited state indicate that the potential in the S1 state is very flat. At higher excess energies most bands can be assigned to fundamentals, overtones and combination bands of either totally symmetric ag modes or of b2g modes that appear due to vibronic coupling. Lifetimes between 43 ns and 76 ns were measured for a number of vibronic bands. For the S2 state an equilibrium geometry with a non-planar carbon framework was computed. In addition a signal from the pyracene dimer was present. The spectrum shows several broad and structureless transitions. The origin band has a maximum at around 329 nm (30,400 cm(-1)). Again lifetimes between 60 ns and 70 ns were found. The dimer ion signal rises within less than 10 ps. Computations show that a crossed geometry with the long axis of one unit aligned with the short axis of the second constitutes the most stable structure. The broadening of the bands is most likely caused by excimer formation.