Corey E. Roelke

A Comprehensive Analysis of Groundwater Quality in The Barnett Shale Region

The exploration of unconventional shale energy reserves and the extensive use of hydraulic fracturing during well stimulation have raised concerns about the potential effects of unconventional oil and gas extraction (UOG) on the environment. Most accounts of groundwater contamination have focused primarily on the compositional analysis of dissolved gases to address whether UOG activities have had deleterious effects on overlying aquifers. Here, we present an analysis of 550 groundwater samples collected from private and public supply water wells drawing from aquifers overlying the Barnett shale formation of Texas. We detected multiple volatile organic carbon compounds throughout the region, including various alcohols, the BTEX family of compounds, and several chlorinated compounds. These data do not necessarily identify UOG activities as the source of contamination; however, they do provide a strong impetus for further monitoring and analysis of groundwater quality in this region as many of the compounds we detected are known to be associated with UOG techniques.

The fitness consequences of the autotomous blue tail in lizards: an empirical test of predator response using clay models.

Numerous vertebrates employ one or more autotomous body parts as an anti-predation mechanism. Many lizards possess an autotomous tail that is brightly colored blue, which has been suggested to either serve as a decoy mechanism to divert predator attention to the autotomous body part, as an interspecific signal, or as an aposematic signal to predators that it is distasteful or dangerous. While theoretical studies suggest that a conspicuous autotomous body part that increases the probability of escape while not increasing the rate of detection will be favorable over a completely cryptic form, there is little empirical evidence supporting the adaptive benefit of an autotomous blue tail. We used in situ clay models of a scincid lizard to test the fitness consequences of blue coloration. Lizard models with a dark base color and blue decoy coloration experienced no measurable difference in avian predation relative to an all-dark model, which suggests that blue coloration neither serves as an aposematic signal nor increases the conspicuousness of the lizard model. Despite statistically similar attack rates, avian attacks on models with blue coloration were indeed focused on body sections that were colored blue. Our results suggest that the blue tail in lizards serves as an effective decoy, and that avian predation has possibly played a role in the evolution of the blue tail.

Analyzing the relationship between sequence divergence and nodal support using Bayesian phylogenetic analyses.

Determining the appropriate gene for phylogeny reconstruction can be a difficult process. Rapidly evolving genes tend to resolve recent relationships, but suffer from alignment issues and increased homoplasy among distantly related species. Conversely, slowly evolving genes generally perform best for deeper relationships, but lack sufficient variation to resolve recent relationships. We determine the relationship between sequence divergence and Bayesian phylogenetic reconstruction ability using both natural and simulated datasets. The natural data are based on 28 well-supported relationships within the subphylum Vertebrata. Sequences of 12 genes were acquired and Bayesian analyses were used to determine phylogenetic support for correct relationships. Simulated datasets were designed to determine whether an optimal range of sequence divergence exists across extreme phylogenetic conditions. Across all genes we found that an optimal range of divergence for resolving the correct relationships does exist, although this level of divergence expectedly depends on the distance metric. Simulated datasets show that an optimal range of sequence divergence exists across diverse topologies and models of evolution. We determine that a simple to measure property of genetic sequences (genetic distance) is related to phylogenic reconstruction ability in Bayesian analyses. This information should be useful for selecting the most informative gene to resolve any relationships, especially those that are difficult to resolve, as well as minimizing both cost and confounding information during project design.

Biogeography, phylogeny, and morphological evolution of central Texas cave and spring salamanders

BackgroundSubterranean faunal radiations can result in complex patterns of morphological divergence involving both convergent or parallel phenotypic evolution and cryptic species diversity. Salamanders of the genus Eurycea in central Texas provide a particularly challenging example with respect to phylogeny reconstruction, biogeography and taxonomy. These predominantly aquatic species inhabit karst limestone aquifers and spring outflows, and exhibit a wide range of morphological and genetic variation. We extensively sampled spring and cave populations of six Eurycea species within this group (eastern Blepsimolge clade), to reconstruct their phylogenetic and biogeographic history using mtDNA and examine patterns and origins of cave- and surface-associated morphological variation.ResultsGenetic divergence is generally low, and many populations share ancestral haplotypes and/or show evidence of introgression. This pattern likely indicates a recent radiation coupled with a complex history of intermittent connections within the aquatic karst system. Cave populations that exhibit the most extreme troglobitic morphologies show no or very low divergence from surface populations and are geographically interspersed among them, suggesting multiple instances of rapid, parallel phenotypic evolution. Morphological variation is diffuse among cave populations; this is in contrast to surface populations, which form a tight cluster in morphospace. Unexpectedly, our analyses reveal two distinct and previously unrecognized morphological groups encompassing multiple species that are not correlated with spring or cave habitat, phylogeny or geography, and may be due to developmental plasticity.ConclusionsThe evolutionary history of this group of spring- and cave-dwelling salamanders reflects patterns of intermittent isolation and gene flow influenced by complex hydrogeologic dynamics that are characteristic of karst regions. Shallow genetic divergences among several species, evidence of genetic exchange, and nested relationships across morphologically disparate cave and spring forms suggests that cave invasion was recent and many troglobitic morphologies arose independently. These patterns are consistent with an adaptive-shift hypothesis of divergence, which has been proposed to explain diversification in other karst fauna. While cave and surface forms often do not appear to be genetically isolated, morphological diversity within and among populations may be maintained by developmental plasticity, selection, or a combination thereof.

Systematics and Conservation Status of Two Distinct Albertine Rift Treefrogs, Leptopelis karissimbensis and Leptopelis kivuensis (Anura: Arthroleptidae)

Abstract We examined the systematics of two frequently confused Albertine Rift endemic treefrogs, Leptopelis karissimbensis and Leptopelis kivuensis. One mitochondrial (16S) and one nuclear (BDNF) gene were sequenced to demonstrate genetic differences between the two species. Although we did not find morphometric differences between the two taxa, several characters can be used to diagnose each species, including coloration (adult male throat), ventral pigmentation, presence/absence of a slight heel spur in large individuals, and male advertisement calls. The geographic distribution of each species is revised based on our new locality records and reconsideration of historical records from the literature. We recommend that L. karissimbensis be downgraded in conservation status to near threatened, because it does not meet the IUCN restricted geographic distribution criteria of an endangered species.

Tadpole of the frog, Leptopelis karissimbensis, from Rwanda (Anura: Arthroleptidae)

Abstract The previously unreported tadpole of Leptopelis karissimbensis, an endangered treefrog from Rwanda, is described. Tadpoles were collected, photographed, measured, and examined for standard metrics of tadpole morphology. Larvae of L. karissimbensis resemble other tadpoles in the genus Leptopelis in being muscular, elongate, and eel-like. The lateral tooth row formula for L. karissimbensis is 4/3. In late stage larvae, tadpoles of L. karissimbensis exhibit a prominent white spot below the eye. Larvae of this species were often abundant in suitable habitat at approximately 2,800 m in elevation. Larval habitat for L. karissimbensis includes seasonally flooded marshes, forest pools, and permanent ponds in the Virunga Mountains, the only known range of this species.

Herpetofauna, Parc National des Volcans, North Province, Republic of Rwanda

Herein is presented a list of the reptiles and anurans from the Parc National des Volcans (PNV) (01°43’ S, 29°52’ W), an area in the west and north provinces of the Republic of Rwanda in the Albertine Rift region of Africa. Fieldwork was conducted between two and six days per week from June through August 2007 and 2008. We also conducted literature searches of all historical expeditions within the park for species records. Seventeen species of reptiles and anurans are recorded from the PNV. Nine of the species were anurans, distributed in five families: Arthroleptidae (3), Bufonidae (1), Hyperoliidae (3), Phrynobatrachidae (1), and Pipidae (1). Eight species of reptiles were recorded from five families: Chamaeleonidae (1), Lacertidae (2), Scincidae (2), Colubridae (2), and Viperidae (1). Eight of the seventeen species found in the PNV are endemic to the Albertine Rift.

Mitochondrial genetic variation within and between Holbrookia lacerata lacerata and Holbrookia lacerata subcaudalis, the spot-tailed earless lizards of Texas

ABSTRACT We examined genetic relationships among individuals and populations of the species Holbrookia lacerata, the spot-tailed earless lizard, using whole mitochondrial genomes. Lizards were collected from south, central and west Texas. We found significant amounts of genetic structure among populations and evidence of two major reciprocally monophyletic groups of spot-tailed earless lizards in Texas. Holbrookia lacerata lacerata occurs on the Edwards Plateau and adjacent regions of West Texas north of the Balcones Escarpment, while Holbrookia lacerata subcaudalis occurs in South Texas and adjacent Mexico south of the Balcones Escarpment. These two recognised subspecies correspond to the two clades we discovered. Holbrookia l. lacerata occupies much of its historical range at sometimes high population densities, while populations of H. l. subcaudalis appear to be highly fragmented based on recent observations compared to their historical range.

Synopsis and taxonomic revision of three genera in the snake tribe Sonorini

ABSTRACT Delimiting species is a crucial goal of integrative biology, and yet can be misled by homoplasy and high levels of morphological variation. The snake tribe Sonorini contains three genera that have long confounded taxonomists: Chilomeniscus, Chionactis and Sonora. Dynamic colour evolution in this group, including rampant geographic variation in colour and colour polymorphism, has led to a chaotic taxonomy. We used mitochondrial and high-throughput nuclear data (ddRADseq) and complete taxonomic sampling of each genus to reconstruct phylogenetic relationships and systematically revise the genus. Our research revealed that Sonora is paraphyletic with regards to Chilomeniscus and Chionactis and that at least one species (S. semiannulata) is paraphyletic with respect to at least one other recognized species. Additionally, we found substantial undescribed genetic diversity within multiple species which is incongruent with morphological variation in coloration. Accordingly, we proposed synonymizing Chionactis and Chilomeniscus with Sonora, which has taxonomic priority over both genera. As we found genetic evidence that supported some of the historically delimited diversity within multiple taxa, we revised species-level taxonomy accordingly. This new taxonomy recognizes a revised genus of Sonora that contains 15 species of diminutive and often brightly coloured snakes that are distributed from central Mexico to north-western USA. http://www.zoobank.org/urn:lsid:zoobank.org:pub:45A553D8-6435-4E0A-84ED-DF31E2CCD872