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Featured researches published by Dai Nozaki.


Biochemistry | 2017

Hydrogen Bonding Environment of the N3–H Group of Flavin Mononucleotide in the Light Oxygen Voltage Domains of Phototropins

Tatsuya Iwata; Dai Nozaki; Atsushi Yamamoto; Takayuki Koyama; Yasuzo Nishina; Kiyoshi Shiga; Satoru Tokutomi; Masashi Unno; Hideki Kandori

The light oxygen voltage (LOV) domain is a flavin-binding blue-light receptor domain, originally found in a plant photoreceptor phototropin (phot). Recently, LOV domains have been used in optogenetics as the photosensory domain of fusion proteins. Therefore, it is important to understand how LOV domains exhibit light-induced structural changes for the kinase domain regulation, which enables the design of LOV-containing optogenetics tools with higher photoactivation efficiency. In this study, the hydrogen bonding environment of the N3-H group of flavin mononucleotide (FMN) of the LOV2 domain from Adiantum neochrome (neo) 1 was investigated by low-temperature Fourier transform infrared spectroscopy. Using specifically 15N-labeled FMN, [1,3-15N2]FMN, the N3-H stretch was identified at 2831 cm-1 for the unphotolyzed state at 150 K, indicating that the N3-H group forms a fairly strong hydrogen bond. The N3-H stretch showed temperature dependence, with a shift to lower frequencies at ≤200 K and to higher frequencies at ≥250 K from the unphotolyzed to the intermediate states. Similar trends were observed in the LOV2 domains from Arabidopsis phot1 and phot2. By contrast, the N3-H stretch of the Q1029L mutant of neo1-LOV2 and neo1-LOV1 was not temperature dependent in the intermediate state. These results seemed correlated with our previous finding that the LOV2 domains show the structural changes in the β-sheet region and/or the adjacent Jα helix of LOV2 domain, but that such structural changes do not take place in the Q1029L mutant or neo1-LOV1 domain. The environment around the N3-H group was also investigated.


Biochemistry | 2004

Role of Gln1029 in the Photoactivation Processes of the LOV2 Domain in Adiantum Phytochrome3

Dai Nozaki; Tatsuya Iwata; Tomoko Ishikawa; Takeshi Todo; Satoru Tokutomi; Hideki Kandori


Biochemistry | 2003

Light-induced structural changes in the LOV2 domain of Adiantum phytochrome3 studied by low-temperature FTIR and UV-visible spectroscopy.

Tatsuya Iwata; Dai Nozaki; Satoru Tokutomi; Takatoshi Kagawa; Masamitsu Wada; Hideki Kandori


Biochemistry | 2005

Comparative investigation of the LOV1 and LOV2 domains in Adiantum phytochrome3.

Tatsuya Iwata; Dai Nozaki; Satoru Tokutomi; Hideki Kandori


Biochemistry | 2006

Identification of the C=O stretching vibrations of FMN and peptide backbone by 13C-labeling of the LOV2 domain of Adiantum phytochrome3

Tatsuya Iwata; Dai Nozaki; Yoshiaki Sato; Kyosuke Sato; Yasuzo Nishina; Kiyoshi Shiga; Satoru Tokutomi; Hideki Kandori


Chemical Physics Letters | 2005

Unique temperature dependence in the adduct formation between FMN and cysteine S-H group in the LOV2 domain of Adiantum phytochrome3

Dai Nozaki; Tatsuya Iwata; Satoru Tokutomi; Hideki Kandori


Journal of Molecular Structure | 2005

Water structural changes in the activation process of the LOV2 domain of Adiantum phytochrome3

Dai Nozaki; Tatsuya Iwata; Satoru Tokutomi; Hideki Kandori


Seibutsu Butsuri | 2006

1P412 Identification of the N-H stretch of Asn1008 by FTIR spectroscopy in the LOV2 domain of Adiantum Phytochrome3(17. Light driven system,Poster Session,Abstract,Meeting Program of EABS &BSJ 2006)

Tatsuya Iwata; Dai Nozaki; Satoru Tokutomi; Hideki Kandori


Seibutsu Butsuri | 2005

2P291 Structural analysis of the triplet excited-state of phy3-LOV2 by low-temperature FTIR spectroscopy

Yoshiaki Sato; Tatsuya Iwata; Dai Nozaki; K. Sato; Y. Nishina; K. Shiga; Satoru Tokutomi; Hideki Kandori


Seibutsu Butsuri | 2005

2P292 C=O Stretching Vibrations from FMN and Peptide Backbone Identified by ^ C Labeling in the LOV2 domain of Adiantum Phytochrome3

Tatsuya Iwata; Dai Nozaki; Yoshiaki Sato; K. Sato; Y. Nishina; K. Shiga; Satoru Tokutomi; Hideki Kandori

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Hideki Kandori

Nagoya Institute of Technology

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Tatsuya Iwata

Nagoya Institute of Technology

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Satoru Tokutomi

Osaka Prefecture University

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Yoshiaki Sato

Nagoya Institute of Technology

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Atsushi Yamamoto

Osaka University of Pharmaceutical Sciences

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