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Featured researches published by Dai Shiba.


The Journal of Neuroscience | 2008

Reactive Oxygen Species Derived from NOX1/NADPH Oxidase Enhance Inflammatory Pain

Masakazu Ibi; Kuniharu Matsuno; Dai Shiba; Masato Katsuyama; Kazumi Iwata; Tomoko Kakehi; Takayuki Nakagawa; Kazunori Sango; Yasuhito Shirai; Takahiko Yokoyama; Shuji Kaneko; Naoaki Saito; Chihiro Yabe-Nishimura

The involvement of reactive oxygen species (ROS) in an augmented sensitivity to painful stimuli (hyperalgesia) during inflammation has been suggested, yet how and where ROS affect the pain signaling remain unknown. Here we report a novel role for the superoxide-generating NADPH oxidase in the development of hyperalgesia. In mice lacking Nox1 (Nox1−/Y), a catalytic subunit of NADPH oxidase, thermal and mechanical hyperalgesia was significantly attenuated, whereas no change in nociceptive responses to heat or mechanical stimuli was observed. In dorsal root ganglia (DRG) neurons of Nox1+/Y, pretreatment with chemical mediators bradykinin, serotonin, or phorbol 12-myristate 13-acetate (PMA) augmented the capsaicin-induced calcium increase, whereas this increase was significantly attenuated in DRG neurons of Nox1−/Y. Concomitantly, PMA-induced translocation of PKCε was markedly perturbed in Nox1−/Y or Nox1+/Y DRG neurons treated with ROS-scavenging agents. In cells transfected with tagged PKCε, hydrogen peroxide induced translocation and a reduction in free sulfhydryls of full-length PKCε but not of the deletion mutant lacking the C1A domain. These findings indicate that NOX1/NADPH oxidase accelerates the translocation of PKCε in DRG neurons, thereby enhancing the TRPV1 activity and the sensitivity to painful stimuli.


Journal of Cell Science | 2009

Localization of Inv in a distinctive intraciliary compartment requires the C-terminal ninein-homolog-containing region

Dai Shiba; Yoshihisa Yamaoka; Haruo Hagiwara; Tetsuro Takamatsu; Hiroshi Hamada; Takahiko Yokoyama

The primary cilium is an antenna-like structure extending from the surface of most vertebrate cells. Loss or mutation of ciliary proteins can lead to polycystic kidney disease and other developmental abnormalities. inv mutant mice develop multiple renal cysts and are a model for human nephronophthisis type 2. The mouse Inv gene encodes a 1062-amino-acid protein that is localized in primary cilia. In this study, we show that the Inv protein (also known as inversin) is localized at a distinctive proximal segment of the primary cilium, using GFP-tagged Inv constructs and anti-Inv antibody. We named this segment the Inv compartment of the cilium. Further investigation of the Inv protein showed that 60 amino acids at its C-terminal, which contains ninein homologous sequences, are crucial for its localization to the Inv compartment. Fluorescence recovery after photobleaching analysis revealed that the Inv protein was dynamic within this compartment. These results suggest that localization of the Inv protein to the Inv compartment is actively regulated. The present study revealed that the primary cilium has a distinct molecular compartment in the body of the primary cilium with a specific confining and trafficking machinery that has not been detected previously by morphological examination.


Cytoskeleton | 2010

Inv acts as a molecular anchor for Nphp3 and Nek8 in the proximal segment of primary cilia.

Dai Shiba; Danielle K. Manning; Hisashi Koga; David R. Beier; Takahiko Yokoyama

A primary cilium is an antenna‐like structure extending from the surface of most vertebrate cells. It is structurally divided along its vertical axis into sub‐compartments that include the ciliary tip, the shaft, the ciliary necklace segment, the transitional zone and the basal body. We recently discovered that the shaft of the primary cilia has a distinct molecular compartment, termed the “Inv compartment”, which is characterized by the accumulation of Inv at the base of primary cilia. Inv was discovered as a causative gene in inv mutant mice. It was later found to be responsible for the infantile type of nephronophthisis (NPHP2). Nephronophthisis (NPHP) is an autosomal recessive kidney disease. Nine causative genes have been identified, with all examined products thought to function in cilia, basal body and/or centrioles. However, their exact intra‐ciliary localization and relationship have not been clear. Here, we report that products of Nphp3 and Nek8 (the mouse orthologs of the causative genes for NPHP3 and NPHP9, respectively) localize to the Inv compartment. We also show that Inv is essential for the compartmental localization of Nphp3 and Nek8, whereas localization of Inv does not require Nphp3 or Nek8. Nphp1 and Nphp4 also localize at the proximal region of the cilium, but not in Inv compartment. Our results indicate that Inv acts as an anchor for Nphp3 and Nek8 in the Inv compartment, and suggest that Inv compartment is a candidate site for intra‐ciliary interaction of Inv, Nphp3 and Nek8.


FEBS Letters | 2009

A murine model of neonatal diabetes mellitus in Glis3-deficient mice.

Naoki Watanabe; Kentaro Hiramatsu; Rieko Miyamoto; Kaoru Yasuda; Norihiko Suzuki; Naoko Oshima; Hiroshi Kiyonari; Dai Shiba; Saori Nishio; Toshio Mochizuki; Takahilco Yokoyama; Shoichi Maruyama; Seiichi Matsuo; Yuko Wakamatsu; Hisashi Hashimoto

Glis3 is a member of the Gli‐similar subfamily. GLIS3 mutations in humans lead to neonatal diabetes, hypothyroidism, and cystic kidney disease. We generated Glis3‐deficient mice by gene‐targeting. The Glis3 −/− mice had significant increases in the basal blood sugar level during the first few days after birth. The high levels of blood sugar are attributed to a decrease in the Insulin mRNA level in the pancreas that is caused by impaired islet development and the subsequent impairment of Insulin‐producing cell formation. The pancreatic phenotypes indicate that the Glis3‐deficient mice are a model for GLIS3 mutation and diabetes mellitus in humans.


PLOS ONE | 2009

Polycystic Kidney Disease in the Medaka (Oryzias latipes) pc Mutant Caused by a Mutation in the Gli-Similar3 (glis3) Gene

Hisashi Hashimoto; Rieko Miyamoto; Naoki Watanabe; Dai Shiba; Kenjiro Ozato; Chikako Inoue; Yuko Kubo; Akihiko Koga; Tomoko Jindo; Takanori Narita; Kiyoshi Naruse; Kazuko Ohishi; Keiko Nogata; Tadasu Shin-I; Shuichi Asakawa; Nobuyoshi Shimizu; Tomotsune Miyamoto; Toshio Mochizuki; Takahiko Yokoyama; Hiroshi Hori; Hiroyuki Takeda; Yuji Kohara; Yuko Wakamatsu

Polycystic kidney disease (PKD) is a common hereditary disease in humans. Recent studies have shown an increasing number of ciliary genes that are involved in the pathogenesis of PKD. In this study, the Gli-similar3 (glis3) gene was identified as the causal gene of the medaka pc mutant, a model of PKD. In the pc mutant, a transposon was found to be inserted into the fourth intron of the pc/glis3 gene, causing aberrant splicing of the pc/glis3 mRNA and thus a putatively truncated protein with a defective zinc finger domain. pc/glis3 mRNA is expressed in the epithelial cells of the renal tubules and ducts of the pronephros and mesonephros, and also in the pancreas. Antisense oligonucleotide-mediated knockdown of pc/glis3 resulted in cyst formation in the pronephric tubules of medaka fry. Although three other glis family members, glis1a, glis1b and glis2, were found in the medaka genome, none were expressed in the embryonic or larval kidney. In the pc mutant, the urine flow rate in the pronephros was significantly reduced, which was considered to be a direct cause of renal cyst formation. The cilia on the surface of the renal tubular epithelium were significantly shorter in the pc mutant than in wild-type, suggesting that shortened cilia resulted in a decrease in driving force and, in turn, a reduction in urine flow rate. Most importantly, EGFP-tagged pc/glis3 protein localized in primary cilia as well as in the nucleus when expressed in mouse renal epithelial cells, indicating a strong connection between pc/glis3 and ciliary function. Unlike human patients with GLIS3 mutations, the medaka pc mutant shows none of the symptoms of a pancreatic phenotype, such as impaired insulin expression and/or diabetes, suggesting that the pc mutant may be suitable for use as a kidney-specific model for human GLIS3 patients.


Cytoskeleton | 2012

Targeting of Nphp3 to the primary cilia is controlled by an N-terminal myristoylation site and coiled-coil domains†

Kana Nakata; Dai Shiba; Daisuke Kobayashi; Takahiko Yokoyama

Primary cilia are organelles that extend from the cell surface. More than 600 proteins have been identified in cilia, but ciliary targeting mechanisms are poorly understood. Nephronophthisis (NPHP) is an autosomal recessive cystic kidney disease with 11 responsible genes (NPHP1–11) thus far being identified. The mouse Nphp3 gene product is localized in the cilia and contains coiled‐coil (CC) domains and tetratricopeptide repeats, but the ciliary targeting sequences (CTSs) are unknown. In the present study, we generated a series of GFP‐tagged deletion constructs of Nphp3 and tried to find the CTSs of Nphp3. We found that the N‐terminal 201 amino acid fragment (Nphp3 [1–201]), which contains two CC domains, is necessary and sufficient for cilia localization. Further analysis revealed that an N‐terminal glycine (G2), which is a conserved myristoylation site among vertebrates, is also essential for trafficking of Nphp3 to the ciliary shaft. Interestingly, the N‐terminal fragments, Nphp3 (8–201), Nphp3 (52–201), and Nphp3 (96–201), that contain the CC domains, targeted the basal body, but could not enter into the ciliary shaft. Our results showed the importance of myristoylation in ciliary trafficking, and suggest that Nphp3 trafficking to the ciliary shaft occurs in a two‐step process.


Arteriosclerosis, Thrombosis, and Vascular Biology | 2014

Deficiency of NOX1/Nicotinamide Adenine Dinucleotide Phosphate, Reduced Form Oxidase Leads to Pulmonary Vascular Remodeling

Kazumi Iwata; Kanako Ikami; Kuniharu Matsuno; Toshiharu Yamashita; Dai Shiba; Masakazu Ibi; Misaki Matsumoto; Masato Katsuyama; Wenhao Cui; Jia Zhang; Kai Zhu; Norio Takei; Yasuo Kokai; Osamu Ohneda; Takahiko Yokoyama; Chihiro Yabe-Nishimura

Objective— Involvement of reactive oxygen species derived from nicotinamide adenine dinucleotide phosphate, reduced form (NADPH) oxidase has been documented in the development of hypoxia-induced model of pulmonary arterial hypertension (PAH). Because the PAH-like phenotype was demonstrated in mice deficient in Nox1 gene (Nox1−/Y) raised under normoxia, the aim of this study was to clarify how the lack of NOX1/NADPH oxidase could lead to pulmonary pathology. Approach and Results— Spontaneous enlargement and hypertrophy of the right ventricle, accompanied by hypertrophy of pulmonary vessels, were demonstrated in Nox1−/Y 9 to 18 weeks old. Because an increased number of &agr;-smooth muscle actin-positive vessels were observed in Nox1−/Y, pulmonary arterial smooth muscle cells (PASMCs) were isolated and characterized by flow cytometry and terminal deoxynucleotidyl transferase dUTP nick end labeling staining. In Nox1−/Y PASMCs, the number of apoptotic cells was significantly reduced without any change in the expression of endothelin-1, and hypoxia-inducible factors HIF-1&agr; and HIF-2&agr;, factors implicated in the pathogenesis of PAH. A significant decrease in a voltage-dependent K+ channel, Kv1.5 protein, and an increase in intracellular potassium levels were demonstrated in Nox1−/Y PASMCs. When a rescue study was performed in Nox1−/Y crossed with transgenic mice overexpressing rat Nox1 gene, impaired apoptosis and the level of Kv1.5 protein in PASMCs were almost completely recovered in Nox1−/Y harboring the Nox1 transgene. Conclusions— These findings suggest a critical role for NOX1 in cellular apoptosis by regulating Kv1.5 and intracellular potassium levels. Because dysfunction of Kv1.5 is among the features demonstrated in PAH, inactivation of NOX1/NADPH oxidase may be a causative factor for pulmonary vascular remodeling associated with PAH.


Differentiation | 2012

The ciliary transitional zone and nephrocystins.

Dai Shiba; Takahiko Yokoyama

Loss of cilia and ciliary protein causes various abnormalities (called ciliopathy), including situs inversus, renal cystic diseases, polydactyly and dysgenesis of the nervous system. Renal cystic diseases are the most frequently observed symptoms in ciliopathies. Cilia are microtubule-based organelles with the following regions: a ciliary tip, shaft, transitional zone and basal body/mother centriole. Joubert syndrome (JBTS), Meckel Gruber syndrome (MKS) and Nephronophthisis (NPHP) are overlapping syndromes. Recent studies show that JBST and MKS responsible gene products are localized in the transitional zone of the cilia, where they function as a diffusion barrier, and control protein sorting and ciliary membrane composition. Nephrocystins are gene products of NPHP responsible genes, and at least 11 genes have been identified. Although some nephrocystins interact with JBST and MKS proteins, proteomic analysis suggests that they do not form a single complex. Localization analysis reveals that nephrocystins can be divided into two groups. Group I nephrocystins are localized in the transitional zone, whereas group II nephrocystins are localized in the Inv compartment. Homologs of group I nephrocystins, but not group II nephrocystins, have been reported in C. reinhardtii and C. elegans. In this review, we summarize the structure of the ciliary base of C. reinhardtii, C. elegans and mammalian primary cilia, and discuss function of nephrocystins. We also propose a new classification of nephrocystins.


FEBS Letters | 2012

The ciliary protein Nek8/Nphp9 acts downstream of Inv/Nphp2 during pronephros morphogenesis and left-right establishment in zebrafish.

Hajime Fukui; Dai Shiba; Kazuhide Asakawa; Koichi Kawakami; Takahiko Yokoyama

Inv physically interacts with Nek8 by pull down ( View interaction )


Cilia | 2012

A three-step process of Nphp3 ciliary localization

Dai Shiba; Kana Nakata; H Fukui; Daisuke Kobayashi; Takahiko Yokoyama

Primary cilia are microtubule-based organelles projecting from the surface of nearly all cells. Primary cilia are complex organelles and are structurally divided longitudinally into sub-compartments that include the basal body, the transitional zone, the ciliary shaft and the tip. Nephronophthisis (NPHP) is an autosomal recessive cystic kidney disease with 11 responsible genes (NPHP1-11) thus far being identified. The causative gene products, nephrocystins, are divided into at least two groups based on these localizations. Group I nephrocystins (Nphp1, 4, 5, 6 and 8) are localized in the transitional zone, whereas group II nephrocystins are localized in the Inv compartment (Nphp2, 3 and 9). Here, we show the localization mechanism of Nphp3. We generated a series of GFP-tagged deletion constructs of Nphp3 and tried to find the ciliary targeting sequences of Nphp3. We found that the N-terminal fragments, Nphp3 (8–201), Nphp3 (52–201) and Nphp3 (96–201), that contain the CC domains, targeted the basal body, but could not enter into the ciliary shaft. Further analysis revealed that an N-terminal glycine (G2), which is a conserved myristoylation site among vertebrates, is also essential for trafficking of Nphp3 to the ciliary shaft. We revealed that Inv/Nphp2 is not required for entry of Nphp3 into the ciliary shaft. Following entry of Nphp3 into the ciliary shaft, Inv/Nphp2 is required for the localization of Nphp3 to “the Inv compartment”. Our results showed the importance of myristoylation in ciliary trafficking, and suggest that Nphp3 ciliary localization occurs in a three-step process. http://www.f.kpu-m.ac.jp/k/anat2/English/index.html

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Takahiko Yokoyama

Kyoto Prefectural University of Medicine

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Chihiro Yabe-Nishimura

Kyoto Prefectural University of Medicine

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Kana Nakata

Kyoto Prefectural University of Medicine

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Kazumi Iwata

Kyoto Prefectural University of Medicine

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Kuniharu Matsuno

Kyoto Prefectural University of Medicine

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Masakazu Ibi

Kyoto Prefectural University of Medicine

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Masato Katsuyama

Kyoto Prefectural University of Medicine

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