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Dive into the research topics where Dan Lim is active.

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Featured researches published by Dan Lim.


Nature | 2008

Polo-like kinase-1 is activated by aurora A to promote checkpoint recovery

Libor Macůrek; Arne Lindqvist; Dan Lim; Michael A. Lampson; Rob Klompmaker; Raimundo Freire; Christophe Clouin; Stephen S. Taylor; Michael B. Yaffe; René H. Medema

Polo-like kinase-1 (PLK1) is an essential mitotic kinase regulating multiple aspects of the cell division process. Activation of PLK1 requires phosphorylation of a conserved threonine residue (Thr 210) in the T-loop of the PLK1 kinase domain, but the kinase responsible for this has not yet been affirmatively identified. Here we show that in human cells PLK1 activation occurs several hours before entry into mitosis, and requires aurora A (AURKA, also known as STK6)-dependent phosphorylation of Thr 210. We find that aurora A can directly phosphorylate PLK1 on Thr 210, and that activity of aurora A towards PLK1 is greatly enhanced by Bora (also known as C13orf34 and FLJ22624), a known cofactor for aurora A (ref. 7). We show that Bora/aurora-A-dependent phosphorylation is a prerequisite for PLK1 to promote mitotic entry after a checkpoint-dependent arrest. Importantly, expression of a PLK1-T210D phospho-mimicking mutant partially overcomes the requirement for aurora A in checkpoint recovery. Taken together, these data demonstrate that the initial activation of PLK1 is a primary function of aurora A.


The EMBO Journal | 2007

Proteomic screen defines the Polo-box domain interactome and identifies Rock2 as a Plk1 substrate

Drew M. Lowery; Karl R. Clauser; Majbrit Hjerrild; Dan Lim; Jes Alexander; Kazuhiro Kishi; Shao En Ong; Steen Gammeltoft; Steven A. Carr; Michael B. Yaffe

Polo‐like kinase‐1 (Plk1) phosphorylates a number of mitotic substrates, but the diversity of Plk1‐dependent processes suggests the existence of additional targets. Plk1 contains a specialized phosphoserine–threonine binding domain, the Polo‐box domain (PBD), postulated to target the kinase to its substrates. Using the specialized PBD of Plk1 as an affinity capture agent, we performed a screen to define the mitotic Plk1‐PBD interactome by mass spectrometry. We identified 622 proteins that showed phosphorylation‐dependent mitosis‐specific interactions, including proteins involved in well‐established Plk1‐regulated processes, and in processes not previously linked to Plk1 such as translational control, RNA processing, and vesicle transport. Many proteins identified in our screen play important roles in cytokinesis, where, in mammalian cells, the detailed mechanistic role of Plk1 remains poorly defined. We go on to characterize the mitosis‐specific interaction of the Plk1‐PBD with the cytokinesis effector kinase Rho‐associated coiled–coil domain‐containing protein kinase 2 (Rock2), demonstrate that Rock2 is a Plk1 substrate, and show that Rock2 colocalizes with Plk1 during cytokinesis. Finally, we show that Plk1 and RhoA function together to maximally enhance Rock2 kinase activity in vitro and within cells, and implicate Plk1 as a central regulator of multiple pathways that synergistically converge to regulate actomyosin ring contraction during cleavage furrow ingression.


Nature Structural & Molecular Biology | 2009

Structural and functional analyses of minimal phosphopeptides targeting the polo-box domain of polo-like kinase 1

Sang-Moon Yun; Tinoush Moulaei; Dan Lim; Jeong K. Bang; Jung-Eun Park; Shilpa R. Shenoy; Fa Liu; Young Hwi Kang; Chenzhong Liao; Nak-Kyun Soung; Sunhee Lee; Do-Young Yoon; Yoongho Lim; Dong-Hee Lee; Akira Otaka; Ettore Appella; James B. McMahon; Marc C. Nicklaus; Terrence R. Burke; Michael B. Yaffe; Alexander Wlodawer; Kyung S. Lee

Polo-like kinase-1 (Plk1) has a pivotal role in cell proliferation and is considered a potential target for anticancer therapy. The noncatalytic polo-box domain (PBD) of Plk1 forms a phosphoepitope binding module for protein-protein interaction. Here, we report the identification of minimal phosphopeptides that specifically interact with the PBD of human PLK1, but not those of the closely related PLK2 and PLK3. Comparative binding studies and analyses of crystal structures of the PLK1 PBD in complex with the minimal phosphopeptides revealed that the C-terminal SpT dipeptide functions as a high-affinity anchor, whereas the N-terminal residues are crucial for providing specificity and affinity to the interaction. Inhibition of the PLK1 PBD by phosphothreonine mimetic peptides was sufficient to induce mitotic arrest and apoptotic cell death. The mode of interaction between the minimal peptide and PBD may provide a template for designing therapeutic agents that target PLK1.


ACS Chemical Biology | 2012

Identification of high affinity polo-like kinase 1 (Plk1) polo-box domain binding peptides using oxime-based diversification.

Fa Liu; Jung-Eun Park; Wen-Jian Qian; Dan Lim; Andrej Scharow; Thorsten Berg; Michael B. Yaffe; Kyung S. Lee; Terrence R. Burke

In an effort to develop improved binding antagonists of the polo-like kinase 1 (Plk1) polo-box domain (PBD), we optimized interactions of the known high affinity 5-mer peptide PLHSpT using oxime-based post solid-phase peptide diversification of the N-terminal Pro residue. This allowed us to achieve up to two orders of magnitude potency enhancement. An X-ray crystal structure of the highest affinity analogue in complex with Plk1 PBD revealed new binding interactions in a hydrophobic channel that had been occluded in X-ray structures of the unliganded protein. This study represents an important example where amino acid modification by post solid-phase oxime ligation can facilitate the development of protein-protein interaction inhibitors by identifying new binding pockets that would not otherwise be accessible to coded amino acid residues.


Bioorganic & Medicinal Chemistry | 2013

Development of cyclic peptomer inhibitors targeting the polo-box domain of polo-like kinase 1.

Ravichandran N. Murugan; Jung-Eun Park; Dan Lim; Mija Ahn; Chaejoon Cheong; Taeho Kwon; Ky-Youb Nam; Sun Ho Choi; Bo Yeon Kim; Do-Young Yoon; Michael B. Yaffe; Dae-Yeul Yu; Kyung S. Lee; Jeong Kyu Bang

The polo-box domain (PBD) of polo-like kinase 1 (Plk1) is essentially required for the function of Plk1 in cell proliferation. The availability of the phosphopeptide-binding pocket on PBD provides a unique opportunity to develop novel protein-protein interaction inhibitors. Recent identification of a minimal 5-residue-long phosphopeptide, PLHSpT, as a Plk1 PBD-specific ligand has led to the development of several peptide-based inhibitors, but none of them is cyclic peptide. Through the combination of single-peptoid mimics and thio-ether bridged cyclization, we successfully demonstrated for the first time two cyclic peptomers, PL-116 and PL-120, dramatically improved the binding affinity without losing mono-specificity against Plk1 PBD in comparison with the linear parental peptide, PLHSpT. These cyclic peptomers could serve as promising templates for future drug designs to inhibit Plk1 PBD.


PLOS ONE | 2009

Polo-Like Kinase-1 Controls Aurora A Destruction by Activating APC/C-Cdh1

Renske van Leuken; Linda Clijsters; Wouter van Zon; Dan Lim; Xuebiao Yao; Rob M. F. Wolthuis; Michael B. Yaffe; René H. Medema; Marcel A. T. M. van Vugt

Polo-like kinase-1 (Plk1) is activated before mitosis by Aurora A and its cofactor Bora. In mitosis, Bora is degraded in a manner dependent on Plk1 kinase activity and the E3 ubiquitin ligase SCF-βTrCP. Here, we show that Plk1 is also required for the timely destruction of its activator Aurora A in late anaphase. It has been shown that Aurora A destruction is controlled by the auxiliary subunit Cdh1 of the Anaphase-Promoting Complex/Cyclosome (APC/C). Remarkably, we found that Plk1-depletion prevented the efficient dephosphorylation of Cdh1 during mitotic exit. Plk1 mediated its effect on Cdh1, at least in part, through direct phosphorylation of the human phosphatase Cdc14A, controlling the phosphorylation state of Cdh1. We conclude that Plk1 facilitates efficient Aurora A degradation through APC/C-Cdh1 activation after mitosis, with a potential role for hCdc14A.


ChemBioChem | 2012

Peptoid-Peptide hybrid ligands targeting the polo box domain of polo-like kinase 1.

Fa Liu; Jung-Eun Park; Wen-Jian Qian; Dan Lim; Andrej Scharow; Thorsten Berg; Michael B. Yaffe; Kyung S. Lee; Terrence R. Burke

We replaced the amino terminal Pro residue of the Plk1 polo‐box‐domain‐binding pentapeptide (PLHSpT) with a library of N‐alkyl‐Gly “peptoids”, and identified long‐chain tethered phenyl moieties giving greater than two‐orders‐of‐magnitude affinity enhancement. Further simplification by replacing the peptoid residue with appropriate amides gave low‐nanomolar affinity N‐acylated tetrapeptides. Binding of the N‐terminal long‐chain phenyl extension was demonstrated by X‐ray co‐crystal data.


Biopolymers | 2014

Mono‐anionic phosphopeptides produced by unexpected histidine alkylation exhibit high plk1 polo‐box domain‐binding affinities and enhanced antiproliferative effects in hela cells

Wen-Jian Qian; Jung-Eun Park; Dan Lim; Christopher C. Lai; James A. Kelley; Suk-Youl Park; Ki Won Lee; Michael B. Yaffe; Kyung S. Lee; Terrence R. Burke

Binding of polo‐like kinase 1 (Plk1) polo‐box domains (PBDs) to phosphothreonine (pThr)/phosphoserine (pSer)‐containing sequences is critical for the proper function of Plk1. Although high‐affinity synthetic pThr‐containing peptides provide starting points for developing PBD‐directed inhibitors, to date the efficacy of such peptides in whole cell assays has been poor. This potentially reflects limited cell membrane permeability arising, in part, from the di‐anionic nature of the phosphoryl group or its mimetics. In our current article we report the unanticipated on‐resin N(τ)‐alkylation of histidine residues already bearing a N(π)‐ alkyl group. This resulted in cationic imidazolium‐containing pThr peptides, several of which exhibit single‐digit nanomolar PBD‐binding affinities in extracellular assays and improved antimitotic efficacies in intact cells. We enhanced the cellular efficacies of these peptides further by applying bio‐reversible pivaloyloxymethyl (POM) phosphoryl protection. New structural insights presented in our current study, including the potential utility of intramolecular charge masking, may be useful for the further development of PBD‐binding peptides and peptide mimetics.


Chemistry & Biology | 2013

Peptide-Based Inhibitors of Plk1 Polo-box Domain Containing Mono-anionic Phosphothreonine Esters and Their Pivaloyloxymethyl Prodrugs

Wen-Jian Qian; Jung-Eun Park; Dan Lim; Suk-Youl Park; Ki Won Lee; Michael B. Yaffe; Kyung S. Lee; Terrence R. Burke

Binding of polo-like kinase 1 (Plk1) polo-box domains (PBDs) to phosphothreonine (pThr)/phosphoserine (pSer)-containing sequences is critical for the proper function of Plk1. Although high-affinity synthetic pThr-containing peptides may be used to disrupt PBD function, the efficacy of such peptides in whole cell assays has been poor. This potentially reflects limited cell membrane permeability arising in part from the di-anionic nature of the phosphoryl group. We report five-mer peptides containing mono-anionic pThr phosphoryl esters that exhibit single-digit nanomolar PBD binding affinities in extracellular assays and improved antimitotic efficacies in whole cell assays. The cellular efficacies of these peptides have been further enhanced by the application of bio-reversible pivaloyloxymethyl (POM) phosphoryl protection to a pThr-containing polypeptide. Our findings may redefine structural parameters for the development of PBD-binding peptides and peptide mimetics.


ChemBioChem | 2012

Cover Picture: Peptoid–Peptide Hybrid Ligands Targeting the Polo Box Domain of Polo‐Like Kinase 1 (ChemBioChem 9/2012)

Fa Liu; Jung-Eun Park; Wen-Jian Qian; Dan Lim; Andrej Scharow; Thorsten Berg; Michael B. Yaffe; Kyung Soo Lee; Terrence R. Burke

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Michael B. Yaffe

Massachusetts Institute of Technology

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Jung-Eun Park

National Institutes of Health

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Terrence R. Burke

National Institutes of Health

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Kyung S. Lee

National Institutes of Health

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Wen-Jian Qian

National Institutes of Health

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Fa Liu

National Institutes of Health

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Ki Won Lee

Seoul National University

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