Dan Malone

Incorporating biogeography into evaluations of the Channel Islands marine reserve network

Networks of marine reserves are increasingly a major component of many ecosystem-based management plans designed to conserve biodiversity, protect the structure and function of ecosystems, and rebuild and sustain fisheries. There is a growing need for scientific guidance in the design of network-wide monitoring programs to evaluate the efficacy of reserves at meeting their conservation and management goals. Here, we present an evaluation of the Channel Islands reserve network, which was established in 2003 off the coast of southern California. This reserve network spans a major environmental and biogeographic gradient, making it a challenge to assess network-wide responses of many species. Using fish community structure data from a long-term, large-scale monitoring program, we first identified persistent geographic patterns of community structure and the scale at which sites should be grouped for analysis. Fish communities differed most among islands with densities of individual species varying from 3- to 250-fold. Habitat structure differed among islands but not based on reserve status. Across the network, we found that, after 5 years, species targeted by fishing had higher densities (1.5×) and biomass (1.8×) inside reserves, whereas nontargeted species showed no significant differences. Examining trophic groups, piscivore and carnivore biomass was significantly greater inside reserves (1.8× and 1.3× more, respectively), whereas the biomass of planktivores and herbivores was similar inside and out. A framework for incorporating biogeographic variation into reserve network assessments is critical as we move from the evaluation of single reserves to networks of reserves.

Wave disturbance overwhelms top-down and bottom-up control of primary production in California kelp forests.

We took advantage of regional differences in environmental forcing and consumer abundance to examine the relative importance of nutrient availability (bottom-up), grazing pressure (top-down), and storm waves (disturbance) in determining the standing biomass and net primary production (NPP) of the giant kelp Macrocystis pyrifera in central and southern California. Using a nine-year data set collected from 17 sites we show that, despite high densities of sea urchin grazers and prolonged periods of low nutrient availability in southern California, NPP by giant kelp was twice that of central California where nutrient concentrations were consistently high and sea urchins were nearly absent due to predation by sea otters. Waves associated with winter storms were consistently higher in central California, and the loss of kelp biomass to winter wave disturbance was on average twice that of southern California. These observations suggest that the more intense wave disturbance in central California limited NPP by giant kelp under otherwise favorable conditions. Regional patterns of interannual variation in NPP were similar to those of wave disturbance in that year-to-year variation in disturbance and NPP were both greater in southern California. Our findings provide strong evidence that regional differences in wave disturbance overwhelmed those of nutrient supply and grazing intensity to determine NPP by giant kelp. The important role of disturbance in controlling NPP revealed by our study is likely not unique to giant kelp forests, as vegetation dynamics in many systems are dominated by post-disturbance succession with climax communities being relatively uncommon. The effects of disturbance frequency may be easier to detect in giant kelp because it is fast growing and relatively short lived, with cycles of disturbance and recovery occurring on time scales of years. Much longer data sets (decades to centuries) will likely be needed to properly evaluate the role of disturbance relative to other processes in determining patterns of NPP in other systems.

Larger female fish contribute disproportionately more to self-replenishment

While chance events, oceanography and selective pressures inject stochasticity into the replenishment of marine populations with dispersing life stages, some determinism may arise as a result of characteristics of breeding individuals. It is well known that larger females have higher fecundity, and recent laboratory studies have shown that maternal traits such as age and size can be positively associated with offspring growth, size and survival. Whether such fecundity and maternal effects translate into higher recruitment in marine populations remains largely unanswered. We studied a population of Amphiprion chrysopterus (orange-fin anemonefish) in Moorea, French Polynesia, to test whether maternal size influenced the degree of self-recruitment on the island through body size–fecundity and/or additional size-related maternal effects of offspring. We non-lethally sampled 378 adult and young juveniles at Moorea, and, through parentage analysis, identified the mothers of 27 self-recruits (SRs) out of 101 recruits sampled. We also identified the sites occupied by each mother of an SR and, taking into account variation in maternal size among sites, we found that females that produced SRs were significantly larger than those that did not (approx. 7% greater total length, approx. 20% greater biomass). Our analyses further reveal that the contribution of larger females to self-recruitment was significantly greater than expected on the basis of the relationship between body size and fecundity, indicating that there were important maternal effects of female size on traits of their offspring. These results show, for the first time in a natural population, that larger female fish contribute more to local replenishment (self-recruitment) and, more importantly, that size-specific fecundity alone could not explain the disparity.

Knowledge through partnerships: integrating marine protected area monitoring and ocean observing systems

Escalating concern over the state of coastal marine ecosystems highlights the need for a better understanding of how such systems are structured by physical, biological, and chemical processes, and how human activities interact with these processes. Marine protected area (MPA) networks are being established around the world, in an effort to protect marine populations, communities, and ecosystems. Concurrently, ocean observing systems (OOSs) are being developed and implemented to identify and describe changes in the coastal oceans. Because marine ecosystems are strongly influenced by oceanographic processes, proper interpretation of ecological data to assess MPA performance requires information generated by coastal OOSs. At the same time, OOSs designed with the goal of identifying ecosystem responses to climate change require information from long-term ecological monitoring studies of MPAs. Collaborative integration between ecological and oceanographic monitoring programs is central to elucidating both the role of MPAs for conservation and the influence of climate change on marine ecosystems.

Managing small-scale commercial fisheries for adaptive capacity: Insights from dynamic social-ecological drivers of change in Monterey Bay

Globally, small-scale fisheries are influenced by dynamic climate, governance, and market drivers, which present social and ecological challenges and opportunities. It is difficult to manage fisheries adaptively for fluctuating drivers, except to allow participants to shift effort among multiple fisheries. Adapting to changing conditions allows small-scale fishery participants to survive economic and environmental disturbances and benefit from optimal conditions. This study explores the relative influence of large-scale drivers on shifts in effort and outcomes among three closely linked fisheries in Monterey Bay since the Magnuson-Stevens Fisheries Conservation and Management Act of 1976. In this region, Pacific sardine (Sardinops sagax), northern anchovy (Engraulis mordax), and market squid (Loligo opalescens) fisheries comprise a tightly linked system where shifting focus among fisheries is a key element to adaptive capacity and reduced social and ecological vulnerability. Using a cluster analysis of landings, we identify four modes from 1974 to 2012 that are dominated (i.e., a given species accounting for the plurality of landings) by squid, sardine, anchovy, or lack any dominance, and seven points of transition among these periods. This approach enables us to determine which drivers are associated with each mode and each transition. Overall, we show that market and climate drivers are predominantly attributed to dominance transitions. Model selection of external drivers indicates that governance phases, reflected as perceived abundance, dictate long-term outcomes. Our findings suggest that globally, small-scale fishery managers should consider enabling shifts in effort among fisheries and retaining existing flexibility, as adaptive capacity is a critical determinant for social and ecological resilience.

An Online Database for Informing Ecological Network Models: http://kelpforest.ucsc.edu

Ecological network models and analyses are recognized as valuable tools for understanding the dynamics and resiliency of ecosystems, and for informing ecosystem-based approaches to management. However, few databases exist that can provide the life history, demographic and species interaction information necessary to parameterize ecological network models. Faced with the difficulty of synthesizing the information required to construct models for kelp forest ecosystems along the West Coast of North America, we developed an online database (http://kelpforest.ucsc.edu/) to facilitate the collation and dissemination of such information. Many of the databases attributes are novel yet the structure is applicable and adaptable to other ecosystem modeling efforts. Information for each taxonomic unit includes stage-specific life history, demography, and body-size allometries. Species interactions include trophic, competitive, facilitative, and parasitic forms. Each data entry is temporally and spatially explicit. The online data entry interface allows researchers anywhere to contribute and access information. Quality control is facilitated by attributing each entry to unique contributor identities and source citations. The database has proven useful as an archive of species and ecosystem-specific information in the development of several ecological network models, for informing management actions, and for education purposes (e.g., undergraduate and graduate training). To facilitate adaptation of the database by other researches for other ecosystems, the code and technical details on how to customize this database and apply it to other ecosystems are freely available and located at the following link (https://github.com/kelpforest-cameo/databaseui).

Variation in Responses of Fishes across Multiple Reserves within a Network of Marine Protected Areas in Temperate Waters

Meta-analyses of field studies have shown that biomass, density, species richness, and size of organisms protected by no-take marine reserves generally increase over time. The magnitude and timing of changes in these response variables, however, vary greatly and depend upon the taxonomic groups protected, size and type of reserve, oceanographic regime, and time since the reserve was implemented. We conducted collaborative, fishery-independent surveys of fishes for seven years in and near newly created marine protected areas (MPAs) in central California, USA. Results showed that initially most MPAs contained more and larger fishes than associated reference sites, likely due to differences in habitat quality. The differences between MPAs and reference sites did not greatly change over the seven years of our study, indicating that reserve benefits will be slow to accumulate in California’s temperate eastern boundary current. Fishes in an older reserve that has been closed to fishing since 1973, however, were significantly more abundant and larger than those in associated reference sites. This indicates that reserve benefits are likely to accrue in the California Current ecosystem, but that 20 years or more may be needed to detect significant changes in response variables that are due to MPA implementation. Because of the high spatial and temporal variability of fish recruitment patterns, long-term monitoring is needed to identify positive responses of fishes to protection in the diverse set of habitats in a dynamic eastern boundary current. Qualitative estimates of response variables, such as would be obtained from an expert opinion process, are unlikely to provide an accurate description of MPA performance. Similarly, using one species or one MPA as an indicator is unlikely to provide sufficient resolution to accurately describe the performance of multiple MPAs.

Complementary Sampling Methods to Inform Ecosystem-Based Management of Nearshore Fisheries

Abstract Area-based fishery management and ecosystem-based management strategies are considered beneficial marine resource management tools, but they require finite information about the structure and function of ecosystems to evaluate populations and describe the effects of fishing on ecosystems. The required information is not likely to be obtained from sporadic, fishery-dependent data collected from data-poor fisheries, and funding constraints preclude extensive fishery-independent surveys. This situation has led to an interest in relating or combining information from a variety of disparate sampling methods. From 2003 to 2006, we investigated the relationships between estimates of catch per unit effort (CPUE) and the abundance of fishes generated from typical nearshore commercial fishing operations and estimates of density and abundance derived from scuba surveys in the same locations. The relationships between CPUE and the density estimates derived from different sampling methods were found to be statistically significant in the case of many of the common species sampled across sites in Carmel Bay, California. The compounding effects of within-sample variance and the error associated with the regression equations, however, would result in poor confidence in the values translated from one sampling method to another. Different sampling methods may provide reasonable estimates of population trends, but they are sufficiently different and variable as to preclude the use of a scaling factor to standardize population estimates among sampling methods. Also, the differences in species composition (i.e., relative CPUE or density among species) produced by each sampling method were significant and were also affected by habitat relief and sample depth. Nonetheless, our results suggest the value of a cost-benefit analysis that would allow managers to design optimal sampling strategies for characterizing CPUE relationships within a region of interest. A sampling program that benefits from the complementary strengths of fishing gear and scuba sampling will probably result in the most comprehensive description of nearshore fish assemblages.

An inexpensive instrument for measuring wave exposure and water velocity

Ocean waves drive a wide variety of nearshore physical processes, structuring entire ecosystems through their direct and indirect effects on the settlement, behavior, and survivorship of marine organisms. However, wave exposure remains difficult and expensive to measure. Here, we report on an inexpensive and easily constructed instrument for measuring wave-induced water velocities. The underwater relative swell kinetics instrument (URSKI) is a subsurface float tethered by a short (<1 m) line to the seafloor. Contained within the float is an accelerometer that records the tilt of the float in response to passing waves. During two field trials totaling 358 h, we confirmed the accuracy and precision of URSKI measurements through comparison to velocities measured by an in situ acoustic Doppler velocimeter and those predicted by a standard swell model, and we evaluated how the dimensions of the devices, its buoyancy, and sampling frequency can be modified for use in a variety