Daniel P. Walsh

Evaluation of the lek‐count index for greater sage‐grouse

Abstract Counts of birds attending leks traditionally have been used as an index to the population size of greater sage-grouse (Centrocercus urophasianus) and, more recently, as a means to estimate population size. The relationship between this index and the actual population has not been studied. We used intensive counts of individually marked and unmarked greater sage-grouse on leks to evaluate how sex and age of birds, time of day, and time of season impact lek-attendance patterns and lek counts. These within-season sources of variation need to be considered when estimating detection probability of birds on leks and ultimately adjusting the lek-count index to estimate true population parameters. On average, 42% of marked adult males, 4% of marked hens, and 19% of yearling males were observed on leks per sighting occasion with all 15 known leks being intensively counted. We discovered that lek counts as currently conducted may be useful as an index to greater sage-grouse populations, but standardization of protocols is needed to allow for better spatial and temporal comparisons of lek-count data. Also the probability of detecting birds on leks must be estimated in order to relate lek counts to population parameters. Lastly, we evaluated use of the bounded-count methodology for correcting lek-count data. We showed large biases associated with this technique and below-nominal coverage of confidence intervals even at large numbers of counts, demonstrating the unreliability of the bounded-count method to correct lek-count data.

Systematic Study of Chromatographic Behavior vs Alkyl Chain Length for HPLC Bonded Phases Containing an Embedded Carbamate Group

A series of HPLC bonded phases containing an internal carbamate group were studied by changing the terminal N-alkyl group from C(8)H(17) to C(18)H(37) in increments of two methylene units, i.e., C(8), C(10), C(12), C(14), C(16), and C(18). Each material was prepared via bonding of silica with the respective 3-(chlorodimethylsilyl)propyl N-alkylcarbamate silane. The materials were compared under reversed-phase conditions using a test mixture of nonpolar, polar, and basic compounds in a 65:35 (v/v) methanol/20 mM KH(2)PO(4)/K(2)HPO(4), pH 7, mobile phase. Retention factors were found to generally increase from the C(8) length to the C(12)-C(16) lengths but decreased for the C(18) length. Retention factors were also measured as a function of three ligand surface concentrations for the C(12), C(14), and C(18) materials. In this study, retention generally decreased with increasing surface concentration, especially for the C(18) chain length. Changes in particle surface area and porosity caused by bonding did not fully account for the observed changes in retention factors. Peak shapes for the basic analytes propranolol and amitriptyline were also studied as a function of N-alkylcarbamate chain length and surface concentration. Tailing factors were unaffected by chain length and only weakly dependent on surface concentration. By comparison, tailing factors decreased significantly as surface concentration increased for a set of conventional C(18) alkyl packings.

Soil clay content underlies prion infection odds

Environmental factors—especially soil properties—have been suggested as potentially important in the transmission of infectious prion diseases. Because binding to montmorillonite (an aluminosilicate clay mineral) or clay-enriched soils had been shown to enhance experimental prion transmissibility, we hypothesized that prion transmission among mule deer might also be enhanced in ranges with relatively high soil clay content. In this study, we report apparent influences of soil clay content on the odds of prion infection in free-ranging deer. Analysis of data from prion-infected deer herds in northern Colorado, USA, revealed that a 1% increase in the clay-sized particle content in soils within the approximate home range of an individual deer increased its odds of infection by up to 8.9%. Our findings suggest that soil clay content and related environmental properties deserve greater attention in assessing risks of prion disease outbreaks and prospects for their control in both natural and production settings.

Recent Advances in Small Molecule Microarrays: Applications and Technology

The field of Small Molecule Microarrays (SMMs) is an ever-expanding part of the larger microarray field. SMMs are array based detection systems that use small molecules as probes immobilized on a variety of microarray surfaces that are screened against a number of targets for purposes including, but not limited to, protein-small molecule ligand recognition and protein function profiling. This review covers the recent advances in the field with particular emphasis on the successful applications of SMMs, as well as technical advances in platform optimization and novel small molecule immobilization strategies.

“One Health” or Three? Publication Silos Among the One Health Disciplines

The One Health initiative is a global effort fostering interdisciplinary collaborations to address challenges in human, animal, and environmental health. While One Health has received considerable press, its benefits remain unclear because its effects have not been quantitatively described. We systematically surveyed the published literature and used social network analysis to measure interdisciplinarity in One Health studies constructing dynamic pathogen transmission models. The number of publications fulfilling our search criteria increased by 14.6% per year, which is faster than growth rates for life sciences as a whole and for most biology subdisciplines. Surveyed publications clustered into three communities: one used by ecologists, one used by veterinarians, and a third diverse-authorship community used by population biologists, mathematicians, epidemiologists, and experts in human health. Overlap between these communities increased through time in terms of author number, diversity of co-author affiliations, and diversity of citations. However, communities continue to differ in the systems studied, questions asked, and methods employed. While the infectious disease research community has made significant progress toward integrating its participating disciplines, some segregation—especially along the veterinary/ecological research interface—remains.

Effectiveness of a Redesigned Vaginal Implant Transmitter in Mule Deer

ABSTRACT Our understanding of factors that limit mule deer (Odocoileus hemionus) populations may be improved by evaluating neonatal survival as a function of dam characteristics under free-ranging conditions, which generally requires that both neonates and dams are radiocollared. The most viable technique facilitating capture of neonates from radiocollared adult females is use of vaginal implant transmitters (VITs). To date, VITs have allowed research opportunities that were not previously possible; however, VITs are often expelled from adult females prepartum, which limits their effectiveness. We redesigned an existing VIT manufactured by Advanced Telemetry Systems (ATS; Isanti, MN) by lengthening and widening wings used to retain the VIT in an adult female. Our objective was to increase VIT retention rates and thereby increase the likelihood of locating birth sites and newborn fawns. We placed the newly designed VITs in 59 adult female mule deer and evaluated the probability of retention to parturition and the probability of detecting newborn fawns. We also developed an equation for determining VIT sample size necessary to achieve a specified sample size of neonates. The probability of a VIT being retained until parturition was 0.766 (SE = 0.0605) and the probability of a VIT being retained to within 3 days of parturition was 0.894 (SE = 0.0441). In a similar study using the original VIT wings (Bishop et al. 2007), the probability of a VIT being retained until parturition was 0.447 (SE = 0.0468) and the probability of retention to within 3 days of parturition was 0.623 (SE = 0.0456). Thus, our design modification increased VIT retention to parturition by 0.319 (SE = 0.0765) and VIT retention to within 3 days of parturition by 0.271 (SE = 0.0634). Considering dams that retained VITs to within 3 days of parturition, the probability of detecting at least 1 neonate was 0.952 (SE = 0.0334) and the probability of detecting both fawns from twin litters was 0.588 (SE = 0.0827). We expended approximately 12 person-hours per detected neonate. As a guide for researchers planning future studies, we found that VIT sample size should approximately equal the targeted neonate sample size. Our study expands opportunities for conducting research that links adult female attributes to productivity and offspring survival in mule deer.

Functionalization of divinylbenzene/N-vinylpyrrolidone copolymer particles: ion exchangers for solid phase extraction.

A series of four-mixed mode ion exchangers for SPE, consisting of either weak or strong cation or anion exchangers, have been synthesized by functionalization of spherical, porous particles made from a copolymer of N-vinylpyrrolidone and divinylbenzene. These materials are able to selectively retain and release acidic and basic solutes through the judicious choice of wash solvent pH, as shown through the use of SPE recovery tests.

Understanding the effects of the polymer support on reaction rates and kinetics: knowledge toward efficient synthetic design

Solid-phase organic synthesis (SPOS) has an ever-expanding role in the field of organic synthesis. Partially out of difficulty, and partially from the rapid speed of progress, few basic studies on the role of the physical structure of the resin have been undertaken, and the dissemination of the existing knowledge has been slow. Major advances have been made in the understanding of the many factors that govern a SPOS reactions performance as a function of the choice of solid support.

Detection of Yersinia pestis DNA in Prairie Dog–Associated Fleas by Polymerase Chain Reaction Assay of Purified DNA

We evaluated, refined, and applied well-established polymerase chain reaction (PCR) techniques for detecting Yersinia pestis DNA in fleas (mainly Oropsylla spp.) collected from prairie dog (Cynomys spp.) burrows. Based on results from PCR of avirulent Y. pestis strain A1122 DNA, we used DNA purification and primers for the plasminogen activator gene to screen field-collected fleas. We detected Y. pestis DNA in flea pools from two black-tailed prairie dog (Cynomys ludovicianus) colonies with evidence of recent plague epizootics, and from one of four white-tailed prairie dog (Cynomys leucurus) colony complexes (Wolf Creek) where evidence of epizootic plague was lacking. Relative flea abundance and occurrence of Y. pestis DNA among flea pools appeared to vary over time at Wolf Creek. Both DNA purification and primer sequences appeared to influence the likelihood of detecting Y. pestis DNA by PCR in fleas collected from prairie dog burrows in the absence of observed epizootic plague. Presence of Y. pestis plasmid DNA in fleas collected from prairie dog burrows at Wolf Creek may represent evidence that infected fleas were somehow being maintained in that system between epizootics, consistent with the hypothesized enzootic maintenance of plague in prairie dog colony complexes elsewhere.

Evaluation of Management Treatments Intended to Increase Lamb Recruitment in a Bighorn Sheep Herd

We administered a suite of treatments to a herd of Rocky Mountain bighorn sheep (Ovis canadensis canadensis) that was experiencing poor lamb recruitment and showing signs of respiratory disease. Despite 3 yr of treatment with various combinations of anthelmentics, antibiotics, vaccines, and hyperimmune serum products, recruitment was not improved.