Danilo M. Neves

A new subfamily classification of the leguminosae based on a taxonomically comprehensive phylogeny

The classification of the legume family proposed here addresses the long-known non-monophyly of the traditionally recognised subfamily Caesalpinioideae, by recognising six robustly supported monophyletic subfamilies. This new classification uses as its framework the most comprehensive phylogenetic analyses of legumes to date, based on plastid matK gene sequences, and including near-complete sampling of genera (698 of the currently recognised 765 genera) and ca. 20% (3696) of known species. The matK gene region has been the most widely sequenced across the legumes, and in most legume lineages, this gene region is sufficiently variable to yield well-supported clades. This analysis resolves the same major clades as in other phylogenies of whole plastid and nuclear gene sets (with much sparser taxon sampling). Our analysis improves upon previous studies that have used large phylogenies of the Leguminosae for addressing evolutionary questions, because it maximises generic sampling and provides a phylogenetic tree that is based on a fully curated set of sequences that are vouchered and taxonomically validated. The phylogenetic trees obtained and the underlying data are available to browse and download, facilitating subsequent analyses that require evolutionary trees. Here we propose a new community-endorsed classification of the family that reflects the phylogenetic structure that is consistently resolved and recognises six subfamilies in Leguminosae: a recircumscribed Caesalpinioideae DC., Cercidoideae Legume Phylogeny Working Group (stat. nov.), Detarioideae Burmeist., Dialioideae Legume Phylogeny Working Group (stat. nov.), Duparquetioideae Legume Phylogeny Working Group (stat. nov.), and Papilionoideae DC. The traditionally recognised subfamily Mimosoideae is a distinct clade nested within the recircumscribed Caesalpinioideae and is referred to informally as the mimosoid clade pending a forthcoming formal tribal and/or cladebased classification of the new Caesalpinioideae. We provide a key for subfamily identification, descriptions with diagnostic charactertistics for the subfamilies, figures illustrating their floral and fruit diversity, and lists of genera by subfamily. This new classification of Leguminosae represents a consensus view of the international legume systematics community; it invokes both compromise and practicality of use.

Effects of Quaternary Climatic Fluctuations on the Distribution of Neotropical Savanna Tree Species

&NA; In order to develop niche models for tree species characteristic of the cerrado vegetation (woody savannas) of central South America, and to hindcast their distributions during the Last Glacial Maximum and Last Inter‐Glacial, we compiled a dataset of tree species checklists for typical cerrado vegetation (n = 282) and other geographically co‐occurring vegetation types, e.g. seasonally dry tropical forest (n = 355). We then performed an indicator species analysis to select ten species that best characterize typical cerrado vegetation and developed niche models for them using the Maxent algorithm. We used these models to assess the probability of occurrence of each species across South America at the following time slices: Current (0 ka pre‐industrial), Holocene (6 ka BP), Last Glacial Maximum (LGM – 21 ka BP), and Last Interglacial (LIG – 130 ka BP). The niche models were robust for all species and showed the highest probability of occurrence in the core area of the Cerrado Domain. The palaeomodels suggested changes in the distributions of cerrado tree species throughout the Quaternary, with expansion during the LIG into the adjacent Amazonian and Atlantic moist forests, as well as connections with other South American savannas. The LGM models suggested a retraction of cerrado vegetation to inter‐tableland depressions and slopes of the Central Brazilian Highlands. Contrary to previous hypotheses, such as the Pleistocene refuge theory, we found that the widest expansion of cerrado tree species seems to have occurred during the LIG, most probably due to its warmer climate. On the other hand, the postulated retractions during the LGM were likely related to both decreased precipitation and temperature. These results are congruent with palynological and phylogeographic studies in the Cerrado Domain.

Fire, climate and vegetation linkages in the Bolivian Chiquitano seasonally dry tropical forest

South American seasonally dry tropical forests (SDTFs) are critically endangered, with only a small proportion of their original distribution remaining. This paper presents a 12 000 year reconstruction of climate change, fire and vegetation dynamics in the Bolivian Chiquitano SDTF, based upon pollen and charcoal analysis, to examine the resilience of this ecosystem to drought and fire. Our analysis demonstrates a complex relationship between climate, fire and floristic composition over multi-millennial time scales, and reveals that moisture variability is the dominant control upon community turnover in this ecosystem. Maximum drought during the Early Holocene, consistent with regional drought reconstructions, correlates with a period of significant fire activity between 8000 and 7000 cal yr BP which resulted in a decrease in SDTF diversity. As fire activity declined but severe regional droughts persisted through the Middle Holocene, SDTFs, including Anadenanthera and Astronium, became firmly established in the Bolivian lowlands. The trend of decreasing fire activity during the last two millennia promotes the idea among forest ecologists that SDTFs are threatened by fire. Our analysis shows that the Chiquitano seasonally dry biome has been more resilient to Holocene changes in climate and fire regime than previously assumed, but raises questions over whether this resilience will continue in the future under increased temperatures and drought coupled with a higher frequency anthropogenic fire regime. This article is part of the themed issue ‘The interaction of fire and mankind’.

The environmental triangle of the Cerrado Domain: Ecological factors driving shifts in tree species composition between forests and savannas

3. We used a dataset of 1,165 tree species inventories spread across the Cerrado Domain, which 22 come from six vegetation types that have a substantial arboreal component: woody savannas, 23 dystrophic cerradão, mesotrophic cerradão, seasonally dry tropical forests, semideciduous 24 forests and evergreen forests. We found three extremes in terms of tree species composition, 25 with clear underlying ecological drivers, which leads us to propose a ternary model, the 26 ‘Cerrado Vegetation Triangle’, to characterize woody vegetation in the Cerrado. At one 27 extreme, we found that semideciduous and evergreen forests are indistinguishable floristically 28 and are found in areas with high water availability. At another extreme lie seasonally dry 29 tropical forests which are found on more fertile soils. At the third extreme, we found that all 30 types of savanna, and dystrophic cerradão, are highly similar in tree species composition and 31 are commonly found in areas of poor soils and high flammability. Mesotrophic cerradão is 32 transitional in tree species composition between savannas and seasonally dry tropical forest. 33

Inserting Tropical Dry Forests Into the Discussion on Biome Transitions in the Tropics

Tropical moist forests and savannas are iconic biomes. There is, however, a third principal biome in the lowland tropics that is less well known: tropical dry forest. Discussions on responses of vegetation in the tropics to climate and land-use change often focus on shifts between forests and savannas, but ignore dry forests. Tropical dry forests are distinct from moist forests in their seasonal drought stress and consequent deciduousness and differ from savannas in rarely experiencing fire. These factors lead tropical dry forests to have unique ecosystem function. Here, we discuss the underlying environmental drivers of transitions among tropical dry forests, moist forests and savannas, and demonstrate how incorporating tropical dry forests into our understanding of tropical biome transitions is critical to understanding the future of tropical vegetation under global environmental change.

Elaphoglossum discolor (Kuhn) C.Chr. (Dryopteridaceae, Polypodiales, Monilophyta): first record for the state of Mato Grosso do Sul, Brazil

Elaphoglossum discolor was recently discovered and collected on the Urucum plateau of the Brazilian state of Mato Grosso do Sul, lying in the western outskirts of the Pantanal flood plain. This is the southernmost distribution of E. discolor in Brazil.