Daril A. Vilhena

Nodal dynamics, not degree distributions, determine the structural controllability of complex networks.

Structural controllability has been proposed as an analytical framework for making predictions regarding the control of complex networks across myriad disciplines in the physical and life sciences (Liu et al., Nature:473(7346):167–173, 2011). Although the integration of control theory and network analysis is important, we argue that the application of the structural controllability framework to most if not all real-world networks leads to the conclusion that a single control input, applied to the power dominating set, is all that is needed for structural controllability. This result is consistent with the well-known fact that controllability and its dual observability are generic properties of systems. We argue that more important than issues of structural controllability are the questions of whether a system is almost uncontrollable, whether it is almost unobservable, and whether it possesses almost pole-zero cancellations.

Provincialization of terrestrial faunas following the end-Permian mass extinction

In addition to their devastating effects on global biodiversity, mass extinctions have had a long-term influence on the history of life by eliminating dominant lineages that suppressed ecological change. Here, we test whether the end-Permian mass extinction (252.3 Ma) affected the distribution of tetrapod faunas within the southern hemisphere and apply quantitative methods to analyze four components of biogeographic structure: connectedness, clustering, range size, and endemism. For all four components, we detected increased provincialism between our Permian and Triassic datasets. In southern Pangea, a more homogeneous and broadly distributed fauna in the Late Permian (Wuchiapingian, ∼257 Ma) was replaced by a provincial and biogeographically fragmented fauna by Middle Triassic times (Anisian, ∼242 Ma). Importantly in the Triassic, lower latitude basins in Tanzania and Zambia included dinosaur predecessors and other archosaurs unknown elsewhere. The recognition of heterogeneous tetrapod communities in the Triassic implies that the end-Permian mass extinction afforded ecologically marginalized lineages the ecospace to diversify, and that biotic controls (i.e., evolutionary incumbency) were fundamentally reset. Archosaurs, which began diversifying in the Early Triassic, were likely beneficiaries of this ecological release and remained dominant for much of the later Mesozoic.

A network approach for identifying and delimiting biogeographical regions

Biogeographical regions (geographically distinct assemblages of species and communities) constitute a cornerstone for ecology, biogeography, evolution and conservation biology. Species turnover measures are often used to quantify spatial biodiversity patterns, but algorithms based on similarity can be sensitive to common sampling biases in species distribution data. Here we apply a community detection approach from network theory that incorporates complex, higher order presence-absence patterns. We demonstrate the performance of the method by applying it to all amphibian species in the world (c. 6,100 species), all vascular plant species of the USA (c. 17,600), and a hypothetical dataset containing a zone of biotic transition. In comparison with current methods, our approach tackles the challenges posed by transition zones and succeeds in retrieving a larger number of commonly recognised biogeographical regions. This method can be applied to generate objective, data derived identification and delimitation of the world’s biogeographical regions.

Spatial Bias in the Marine Fossil Record

Inference of past and present global biodiversity requires enough global data to distinguish biological pattern from sampling artifact. Pertinently, many studies have exposed correlated relationships between richness and sampling in the fossil record, and methods to circumvent these biases have been proposed. Yet, these studies often ignore paleobiogeography, which is undeniably a critical component of ancient global diversity. Alarmingly, our global analysis of 481,613 marine fossils spread throughout the Phanerozoic reveals that where localities are and how intensively they have been sampled almost completely determines empirical spatial patterns of richness, suggesting no separation of biological pattern from sampling pattern. To overcome this, we analyze diversity using occurrence records drawn from two discrete paleolatitudinal bands which cover the bulk of the fossil data. After correcting the data for sampling bias, we find that these two bands have similar patterns of richness despite markedly different spatial coverage. Our findings suggest that i) long-term diversity trends result from large-scale tectonic evolution of the planet, ii) short-term diversity trends are region-specific, and iii) paleodiversity studies must constrain their analyses to well-sampled regions to uncover patterns not driven by sampling.

Bivalve network reveals latitudinal selectivity gradient at the end-Cretaceous mass extinction

Biogeographic patterns of survival help constrain the causal factors responsible for mass extinction. To test whether biogeography influenced end-Cretaceous (K-Pg) extinction patterns, we used a network approach to delimit biogeographic units (BUs) above the species level in a global Maastrichtian database of 329 bivalve genera. Geographic range is thought to buffer taxa from extinction, but the number of BUs a taxon occurred in superseded geographic range as an extinction predictor. Geographically, we found a latitudinal selectivity gradient for geographic range in the K-Pg, such that higher latitude BUs had lower extinction than expected given the geographic ranges of the genera, implying that (i) high latitude BUs were more resistant to extinction, (ii) the intensity of the K-Pg kill mechanism declined with distance from the tropics, or (iii) both. Our results highlight the importance of macroecological structure in constraining causal mechanisms of extinction and estimating extinction risk of taxa.

Pleopod Rowing is used to Achieve High Forward Swimming Speeds during the Escape Response of Odontodactylus havanensis (Stomatopoda)

ABSTRACT The escape responses of twelve individuals of the stomatopod Odontodactylus havanensis (35–64 mm body length) were recorded with conventional and high-speed (60 and 500 images per second) video cameras. Unlike the typical pattern of escape swimming seen in most elongate Malacostracan crustaceans in which quick backward swimming is achieved by rapid pleonal flexion (tail-flipping), O. havanensis always swam forward during its escape response. Rowing of the pleopods provided thrust during swimming. The power phase was metachronal and the recovery phase was approximately synchronous. The mean stroke frequency, from high-speed video, was 17 Hz. With this swimming mode, speeds of 1.25 to 1.62 meters per second and 21 to 40 body-lengths per second were attained. The intermittent nature of the rowing propulsive mode led to temporally unsteady kinematics marked by periodicity. Although forward swimming via pleopod rowing is a very common form of locomotion employed by elongate crustaceans, it is typically observed only during relatively slow, “routine” swimming, with escape being driven by tail-flipping. Odontodactylus havanensis breaks this pattern. Further study into how this species is able to achieve such high speeds via rowing locomotion may yield new insights into our knowledge of animal locomotion through fluids.