David L. Kirk

Genomic Analysis of Organismal Complexity in the Multicellular Green Alga Volvox carteri

Going Multicellular The volvocine algae include both the unicellular Chlamydomonas and the multicellular Volvox, which diverged from one another 50 to 200 million years ago. Prochnik et al. (p. 223) compared the Volvox genome with that of Chlamydomonas to identify any genomic innovations that might have been associated with the transition to multicellularity. Size changes were observed in several protein families in Volvox, but, overall, the Volvox genome and predicted proteome were highly similar to those of Chlamydomonas. Thus, biological complexity can arise without major changes in genome content or protein domains. Comparison of the Chlamydomonas and Volvox genomes show few differences, despite their divergent life histories. The multicellular green alga Volvox carteri and its morphologically diverse close relatives (the volvocine algae) are well suited for the investigation of the evolution of multicellularity and development. We sequenced the 138–mega–base pair genome of V. carteri and compared its ~14,500 predicted proteins to those of its unicellular relative Chlamydomonas reinhardtii. Despite fundamental differences in organismal complexity and life history, the two species have similar protein-coding potentials and few species-specific protein-coding gene predictions. Volvox is enriched in volvocine-algal–specific proteins, including those associated with an expanded and highly compartmentalized extracellular matrix. Our analysis shows that increases in organismal complexity can be associated with modifications of lineage-specific proteins rather than large-scale invention of protein-coding capacity.

Translational regulation of protein synthesis, in response to light, at a critical stage of volvox development

In Volvox cultures synchronized by a light-dark cycle, juveniles containing presumptive somatic and reproductive cells are produced during the dark, but their cells do not differentiate until after the lights come on. The pattern of protein synthesis changes rapidly after the lights come on. Action spectra and effects of photosynthesis inhibitors indicate that this protein synthetic change is not simply a consequence of renewed flow of energy from illuminated chloroplasts. Actinomycin, at a level adequate to block the response to heat shock, has virtually no effect on the response of the same cells to light; furthermore, RNAs isolated from unilluminated and illuminated juveniles yield indistinguishable in vitro translation products. We conclude, therefore, that this effect of light is exerted almost exclusively at the translational level, generating one of the most striking examples of translational regulation yet described.

Protein synthetic patterns during the asexual life cycle of Volvox carteri

The polypeptide labeling patterns of somatic cells, gonidia (asexual reproductive cells), embryos, and juvenile spheroids of Volvox carteri cultures synchronized by a light/dark cycle were studied as a function of developmental stage and incubation condition. Specimens were exposed to 35SO=4 for 1-hr periods at selected intervals throughout the asexual life cycle; proteins were then extracted and analyzed by one-dimensional sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) followed by fluorography. Although sulfation accounts for more than half the 35S incorporated, the conditions of extraction and electrophoresis employed resulted in exclusion of most sulfated products and inclusion of nearly all products bearing incorporated sulfur amino acids in the electrophoretic analysis. Hence SDS-PAGE profiles reflect relative rates of synthesis of major polypeptides. The first phase of these studies involved examination of stage-specific differences in protein synthetic patterns. Because a single developmental stage exhibits different protein synthetic patterns in light and darkness, detailed developmental comparisons were made only on organisms or cells exposed to label in the light. They yielded the following results: Shortly after the completion of embryogenesis (while all cells are still linked by numerous cytoplasmic bridges) presumptive somatic cells and gonidia exhibit a nearly identical pattern of labeling of the major polypeptides. In just a few hours, however, as cytoplasmic bridges begin to break down, the synthetic patterns of the two cell types begin to diverge; with passing time this divergence becomes progressively greater. By the time gonidia are mature, the patterns of labeling of major polypeptides by somatic cells and gonidia exhibit far more differences than similarities. Embryos derived from these mature gonidia then exhibit numerous, reproducible, stage-specific changes in polypeptide labeling throughout embryogenesis. However, two glycoproteins that previous authors implicated in the control of the differentiative cleavage division are here shown to be labeled in the parental somatic cells, not in the embryos as was previously supposed; hence a central role for them in embryonic development seems highly unlikely. In the second phase of this study the effects of light on protein synthetic patterns of organisms at selected developmental stages were analyzed. At all stages marked, rapid, reversible changes in the pattern of labeling of major polypeptides occur when cultures are transferred from light to dark or vice versa, but these changes are most marked in juvenile spheroids at the end of the dark period during which they had completed their embryogenesis. Some, but by no means all, of the changes induced by light can be attributed to stimulated synthesis of chloroplast proteins, on both chloroplast and cytosol ribosomes. The proteins made at the beginning of one light period are not identical to those made at the end of the preceding light period...

Genetic, Biochemical, and Molecular Approaches to Volvox Development and Evolution

Publisher Summary This chapter discusses various genetic, biochemical, and molecular approaches for the development and evolution of Volvox . All members of the genus Volvox possess two, and only two, distinctive cell types—mortal somatic cells and immortal germ cells. But it is in Volvox carteri that this distinction is most clearly established in very early development, and hence the challenge of elucidating the mechanisms for establishing such a dichotomy is fundamentally presented in the chapter. The existence of two entirely different and interdependent cell types—somatic cells specialized for motility and germ cells specialized for reproduction—neither of which could succeed by itself in perpetuating the germ plasm in nature, raises Volvox to the level of a multicellular organism with complete division of labor. The chapter discusses the qualities of V. carteri f . Nagariensis, which was recommended as a model for exploring the molecular-genetic control of development. Two asexual spheroids (individuals) of V. carferi strain HK 10 are illustrated in the chapter. The chapter also describes the visible events of embryonic development and reviews what has been learned from experimental and genetic analysis concerning the control of various important component steps. Six kinds of probes that hybridize with distinct families of middle repetitive DNA sequences have been used to probe Southern blots of genomic DNA in a search for restriction fragment-length polymorphisms (RFLPs) that might be useful for the sort of genetic analysis described in the chapter.

Jordan, an active Volvox transposable element similar to higher plant transposons.

We have isolated a 1595-bp transposable element from the multicellular green alga Volvox carteri following its insertion into the nitrate reductase (nitA) locus. This element, which we have named Jordan, has short (12-bp) terminal inverted repeats and creates a 3-bp target site duplication, like some higher plant transposons of the classic type. Contained within the first 200 bp of one end of the element are 55-bp inverted repeats, one of which begins with the terminal inverted repeat. Revertants of the transposon insertion into the nitA locus were obtained at a rate of approximately 10(-4) per Volvox embryo per generation. In each revertant examined, all transposon sequences were completely excised, but footprints containing both sets of duplicated bases, in addition to three to nine extra bases, were left behind. Jordan contains no significant open reading frames and so appears to be nonautonomous. DNA gel blot analysis indicates that Jordan is a member of a large family of homologous elements in the Volvox genome. We have isolated and characterized several of these homologs and found that they contain terminal very similar to those of Jordan. Efforts to utilize Jordan and its homologs as tools to tag and clone developmentally interesting genes of Volvox are discussed.

In Search of Molecular Origins of Cellular Differentiation in Volvox and Its Relatives

Publisher Summary This chapter presents a summary of the morphological and biochemical evidence that supports the volvocine-lineage hypothesis. It describes attempts to evaluate the validity of this hypothesis objectively with molecular phylogenetic methods. The chapter also reviews advances that have occurred in three areas of Volvox research:(1) the genetic and molecular control of germ or soma differentiation, (2) the mechanism of action of the sexual pheromone, and (3) the comparative anatomy and evolution of selected structural genes of Volvox and Chlamydomonas. The volvocine algae (Chlamydomonas and the members of the family Volvocaceae) all have a fundamentally similar and distinctive pattern of subcellular organization. However, the volvocine algae can be conceptually lined up in a series (Chlamydomonas, Gonium, Pandorina, Eudorina, Pleodorina, and Volvox), in which there is a progressive increase in each of the parameters—cell number, organismic size, tendency for some cells to differentiate terminally as somatic cells, and ratio of somatic-cell number to reproductive-cell number. The volvocine lineage hypothesis postulates that this conceptual series may actually reflect the evolutionary history of the group. The aspect of Volvox carteri development that is most interesting from an evolutionary genetic standpoint is the aspect that most clearly differentiates it from other genera of volvocine algae, and from most other species of Volvox, i.e., the early and complete segregation of separate germ and somatic-cell lineages.

Volvox germline-specific genes that are putative targets of RegA repression encode chloroplast proteins.

Abstract In Volvox carteri, regA acts as a master gene to suppress all germ cell functions in somatic cells. Its product, RegA, has features of a transcriptional repressor. Here we report cDNA sequences representing 15 nuclear genes with properties expected of RegA targets: they are expressed strongly in germ cells and in regA−, but not regA+, somatic cells. Two of them encode polypeptides with no recognizable features, but ten (like three previously sequenced ones) encode chloroplast proteins of known function, and the remaining three encode putative chloroplast proteins of unknown function. This suggests that RegA blocks reproductive development in somatic cells by preventing chloroplast biogenesis, thereby making it impossible for the cells to grow enough to reproduce.

Patterns of organellar and nuclear inheritance among progeny of two geographically isolated strains of Volvox carteri

SummaryStrains of Volvox carteri forma nagariensis derived from Japanese and Indian isolates (“J” and “I” strains, respectively) exhibited length differences (RFLPs) for approximately 90% of the restriction fragments detected by hybridization with a variety of unique-sequence, small-gene-family and repetitive-element probes, including heterologous probes of chloroplast and mitochondrial origin. Extensive post-zygotic mortality was observed among the zygotes produced by crossing J and I strains, suggesting some form of genetic incompatability between them. Most of the viable progeny exhibited recombinant patterns of nuclear inheritance and maternal inheritance of mitochondrial and chloroplast markers. However, many progeny exhibited exclusively uniparental (usually maternal, but in one case paternal) inheritance of both nuclear and organellar markers. Some of these non-recombinant individuals may be derived from “parthenospores” (dormant asexual cells resembling zygospores). Others may be a result of “pseudogamy,” in which one of the parental pronuclei is excluded from the zygote, followed by selective exclusion of both the mitochondrial and the chloroplast genomes derived from that same parent. When segregation patterns for 44 nuclear markers were analyzed in 90 recombinant progeny, statistically significant, locus-specific deviations from expected Mendelian transmission ratios were observed for a sizeable fraction of all markers in both reciprocal crosses: some markers were preferentially transmitted by the J strain, while others were preferentially transmitted by the I strain. It is speculated that these transmission distortions may be related to the regions of inter-isolate genetic incompatability, and may complicate the use of JxI crosses to establish a RFLP-based linkage map for the species.

The nitrate reductase-encoding gene of Volvox carteri: map location, sequence and induction kinetics

The nitrate reductase (NR) structural gene (nitA) of Volvox carteri has been cloned and characterized. There is a single copy of this gene in the genome, and RFLP (restriction-fragment length polymorphism) analysis assigns it to the previously defined nitA/chlR locus on linkage group IX, 20-30 cM from the two beta-tubulin-encoding loci. Determination of the 5871-nt sequence of the coding region of genomic clones, and comparisons to a cDNA sequence, revealed ten introns and eleven exons that encode a 864-aa polypeptide. Detailed comparisons with higher-plant and fungal NRs indicate that, whereas the aa sequence is strongly conserved within functional domains for the flavin adenine dinucleotide-, heme- and molybdenum-pterin cofactor-binding sites, substantial differences in the aa sequence occur in the N-terminal end and the two inter-domain regions. Two potential transcription start points 439 and 452 nt upstream from the start codon and a polyadenylation signal 355 nt downstream from the stop codon have been identified by primer-extension analysis and cDNA sequencing, respectively. Accumulation of the nitA transcript is both induced by nitrate and repressed by ammonium and urea: after the organism is transferred from ammonium to nitrate as the nitrogen source, a 3.6-kb NR transcript is readily detectable on Northern blots by 10 min, reaches maximum abundance by 30 min, and then rapidly declines to an intermediate level that is subsequently maintained. Substantial induction by nitrate is observed at the end of the dark portion of the daily light/dark cycle, but the inductive response peaks in the first hour of the light period.(ABSTRACT TRUNCATED AT 250 WORDS)

The ontogeny and phylogeny of cellular differentiation in Volvox

Abstract A simple pattern of dichotomous cellular differentiation and an accessible genetic system combine to make Volvox an exceptionally promising model for elucidating the molecular genetic basis of a defined program of cytodifferentiation. At the same time, its close relationship to simpler organisms that lack differentiated cell types makes Volvox an equally promising model for analysing the molecular genetic changes involved in the evolution of multicellularity and division of labor.