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Dive into the research topics where David R. Shook is active.

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Featured researches published by David R. Shook.


Differentiation | 2003

How we are shaped: The biomechanics of gastrulation

Ray Keller; Lance A. Davidson; David R. Shook

Although it is rarely considered so in modern developmental biology, morphogenesis is fundamentally a biomechanical process, and this is especially true of one of the first major morphogenic transformations in development, gastrulation. Cells bring about changes in embryonic form by generating patterned forces and by differentiating the tissue mechanical properties that harness these forces in specific ways. Therefore, biomechanics lies at the core of connecting the genetic and molecular basis of cell activities to the macroscopic tissue deformations that shape the embryo. Here we discuss what is known of the biomechanics of gastrulation, primarily in amphibians but also comparing similar morphogenic processes in teleost fish and amniotes, and selected events in several species invertebrates. Our goal is to review what is known and identify problems for further research.


Philosophical Transactions of the Royal Society B | 2008

Dynamic determinations: patterning the cell behaviours that close the amphibian blastopore

Ray Keller; David R. Shook

We review the dynamic patterns of cell behaviours in the marginal zone of amphibians with a focus on how the progressive nature and the geometry of these behaviours drive blastopore closure. Mediolateral cell intercalation behaviour and epithelial–mesenchymal transition are used in different combinations in several species of amphibian to generate a conserved pattern of circumblastoporal hoop stresses. Although these cell behaviours are quite different and involve different germ layers and tissue organization, they are expressed in similar patterns. They are expressed progressively along presumptive lateral–medial and anterior–posterior axes of the body plan in highly ordered geometries of functional significance in the context of the biomechanics of blastopore closure, thereby accounting for the production of similar patterns of circumblastoporal forces. It is not the nature of the cell behaviour alone, but the context, the biomechanical connectivity and spatial and temporal pattern of its expression that determine specificity of morphogenic output during gastrulation and blastopore closure. Understanding the patterning of these dynamic features of cell behaviour is important and will require analysis of signalling at much greater spatial and temporal resolution than that has been typical in the analysis of patterning tissue differentiation.


BMC Biology | 2011

The bending of cell sheets - from folding to rolling

Ray Keller; David R. Shook

The bending of cell sheets plays a major role in multicellular embryonic morphogenesis. Recent advances are leading to a deeper understanding of how the biophysical properties and the force-producing behaviors of cells are regulated, and how these forces are integrated across cell sheets during bending. We review work that shows that the dynamic balance of apical versus basolateral cortical tension controls specific aspects of invagination of epithelial sheets, and recent evidence that tissue expansion by growth contributes to neural retinal invagination in a stem cell-derived, self-organizing system. Of special interest is the detailed analysis of the type B inversion in Volvox reported in BMC Biology by Höhn and Hallmann, as this is a system that promises to be particularly instructive in understanding morphogenesis of any monolayered spheroid system.See research article: http://www.biomedcentral.com/1741-7007/9/89


Development | 2016

Molecular model for force production and transmission during vertebrate gastrulation.

Katherine Pfister; David R. Shook; Chenbei Chang; Ray Keller; Paul Skoglund

Vertebrate embryos undergo dramatic shape changes at gastrulation that require locally produced and anisotropically applied forces, yet how these forces are produced and transmitted across tissues remains unclear. We show that depletion of myosin regulatory light chain (RLC) levels in the embryo blocks force generation at gastrulation through two distinct mechanisms: destabilizing the myosin II (MII) hexameric complex and inhibiting MII contractility. Molecular dissection of these two mechanisms demonstrates that normal convergence force generation requires MII contractility and we identify a set of molecular phenotypes correlated with both this failure of convergence force generation in explants and of blastopore closure in whole embryos. These include reduced rates of actin movement, alterations in C-cadherin dynamics and a reduction in the number of polarized lamellipodia on intercalating cells. By examining the spatial relationship between C-cadherin and actomyosin we also find evidence for formation of transcellular linear arrays incorporating these proteins that could transmit mediolaterally oriented tensional forces. These data combine to suggest a multistep model to explain how cell intercalation can occur against a force gradient to generate axial extension forces. First, polarized lamellipodia extend mediolaterally and make new C-cadherin-based contacts with neighboring mesodermal cell bodies. Second, lamellipodial flow of actin coalesces into a tension-bearing, MII-contractility-dependent node-and-cable actin network in the cell body cortex. And third, this actomyosin network contracts to generate mediolateral convergence forces in the context of these transcellular arrays. Summary: The analysis of actomyosin and C-cadherin dynamics in Xenopus embryos suggests a multistep model to explain how cell intercalation can occur against a force gradient to drive axial extension.


eLife | 2018

Large, long range tensile forces drive convergence during Xenopus blastopore closure and body axis elongation

David R. Shook; Eric M Kasprowicz; Lance A. Davidson; Ray Keller

Indirect evidence suggests that blastopore closure during gastrulation of anamniotes, including amphibians such as Xenopus laevis, depends on circumblastoporal convergence forces generated by the marginal zone (MZ), but direct evidence is lacking. We show that explanted MZs generate tensile convergence forces up to 1.5 μN during gastrulation and over 4 μN thereafter. These forces are generated by convergent thickening (CT) until the midgastrula and increasingly by convergent extension (CE) thereafter. Explants from ventralized embryos, which lack tissues expressing CE but close their blastopores, produce up to 2 μN of tensile force, showing that CT alone generates forces sufficient to close the blastopore. Uniaxial tensile stress relaxation assays show stiffening of mesodermal and ectodermal tissues around the onset of neurulation, potentially enhancing long-range transmission of convergence forces. These results illuminate the mechanobiology of early vertebrate morphogenic mechanisms, aid interpretation of phenotypes, and give insight into the evolution of blastopore closure mechanisms.


bioRxiv | 2018

Characterization of convergent thickening, a major convergence force producing morphogenic movement in amphibians

David R. Shook; Jason W. H. Wen; Ana Rolo; Brian Francica; Destiny Dobins; Paul Skoglund; Douglas W. DeSimone; Rudolf Winklbauer; Ray Keller

We characterize the morphogenic process of convergent thickening (CT), which occurs in the involuting marginal zone (IMZ) during gastrulation of Xenopus, the African clawed frog. CT was described previously as the tendency of explants of the ventral IMZ of Xenopus to converge their circumblastoporal dimension and thicken their radial dimension (Keller and Danilchik 1988). Here we show that CT occurs from the onset of gastrulation, initially throughout the pre-involution IMZ. We suggest that CT is driven by an increase in the interfacial tension between the deep IMZ and its epithelium, resulting in cells of the deep IMZ tending to minimize their surface area. In explants, this results in a progressive shortening (convergence) of the IMZ along its longer mediolateral axis and thickening in the orthogonal planes, and can generate tensile force (Shook et al. 2018). In vivo, convergence of the annular IMZ generates circumferential tension, closing the blastopore. These results provide the first clear example of a tensile morphogenic force from a Holtfreterian/Steinbergian change in tissue affinity.


Mechanisms of Development | 2015

Normal table of embryonic development in the four-toed salamander, Hemidactylium scutatum.

C.A. Hurney; S.K. Babcock; David R. Shook; T.M. Pelletier; Stephen D. Turner; J. Maturo; S. Cogbill; M.C. Snow; K. Kinch

We present a complete staging table of normal development for the lungless salamander, Hemidactylium scutatum (Caudata: Plethodontidae). Terrestrial egg clutches from naturally ovipositing females were collected and maintained at 15 °C in the laboratory. Observations, photographs, and time-lapse movies of embryos were taken throughout the 45-day embryonic period. The complete normal table of development for H. scutatum is divided into 28 stages and extends previous analyses of H. scutatum embryonic development (Bishop, 1920; Humphrey, 1928). Early embryonic stage classifications through neurulation reflect criteria described for Xenopus laevis, Ambystoma maculatum and other salamanders. Later embryonic stage assignments are based on unique features of H. scutatum embryos. Additionally, we provide morphological analysis of gastrulation and neurulation, as well as details on external aspects of eye, gill, limb, pigmentation, and tail development to support future research related to phylogeny, comparative embryology, and molecular mechanisms of development.


Archive | 1997

Identifying and Cloning Longevity-Determining Genes in the Nematode

Thomas E. Johnson; Shin Murakami; David R. Shook; S. A. Duhon; Pat Tedesco

Gerontogenes are genes that are involved in aging. Some alleles of such genes can lead to longer life expectancy. Such genes are beginning to be identified in several species, especially yeast, the fruit fly and in the nematode, Caenorhabditis elegans. Five genes are known in the nematode and all of these lead to increased resistance to a variety of stresses. We hypothesize that such genes have been conserved over evolutionary time and serve a role in modulating an organisms response to stress and novel environments.


Mechanisms of Development | 2003

Mechanisms, mechanics and function of epithelial–mesenchymal transitions in early development

David R. Shook; Ray Keller


Philosophical Transactions of the Royal Society B | 2000

Mechanisms of convergence and extension by cell intercalation

Ray Keller; Lance A. Davidson; Anna F. Edlund; Tamira Elul; Max Ezin; David R. Shook; Paul Skoglund

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Ray Keller

University of Virginia

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Thomas E. Johnson

University of Colorado Boulder

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C. Michael Crowder

Washington University in St. Louis

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Eric M Kasprowicz

Thomas Jefferson University Hospital

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Robert J. Shmookler Reis

University of Arkansas for Medical Sciences

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